Receptor
PDB id Resolution Class Description Source Keywords
4RGA 2.1 Å NON-ENZYME: SIGNAL_HORMONE PHAGE 1358 RECEPTOR BINDING PROTEIN IN COMPLEX WITH THE TRIS GLCNAC-GALF-GLCOME LACTOCOCCUS PHAGE 1358 ALPHA/BETA PROTEIN PHAGE RECEPTOR BINDING PROTEIN LACTOCOCLACTIS SMQ388 VIRAL PROTEIN
Ref.: THE TARGETED RECOGNITION OF LACTOCOCCUS LACTIS PHAG THEIR POLYSACCHARIDE RECEPTORS. MOL.MICROBIOL. V. 96 875 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GYP GZL NAG C:1;
D:1;
 Valid;
Valid;
 none;
none;
 submit data
559.518 n/a O=C(N...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4RGA 2.1 Å NON-ENZYME: SIGNAL_HORMONE PHAGE 1358 RECEPTOR BINDING PROTEIN IN COMPLEX WITH THE TRIS GLCNAC-GALF-GLCOME LACTOCOCCUS PHAGE 1358 ALPHA/BETA PROTEIN PHAGE RECEPTOR BINDING PROTEIN LACTOCOCLACTIS SMQ388 VIRAL PROTEIN
Ref.: THE TARGETED RECOGNITION OF LACTOCOCCUS LACTIS PHAG THEIR POLYSACCHARIDE RECEPTORS. MOL.MICROBIOL. V. 96 875 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 289 families.
1 4RGA - GYP GZL NAG n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 4RGA - GYP GZL NAG n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 4RGA - GYP GZL NAG n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GYP GZL NAG; Similar ligands found: 54
No: Ligand ECFP6 Tc MDL keys Tc
1 GYP GZL NAG 1 1
2 YZ0 MAN MAN NAG MAN 0.571429 0.94
3 BMA Z4Y NAG 0.536842 0.882353
4 MBG A2G 0.535714 0.94
5 MMA MAN NAG MAN NAG NAG 0.520408 0.886792
6 MBG NAG 0.505882 0.94
7 MAN MAN MAN NAG NAG 0.5 0.884615
8 MMA MAN NAG 0.48913 0.94
9 YZ0 MAN Z4Y NAG MAN 0.486726 0.886792
10 BMA MAN MAN NAG GAL NAG 0.46789 0.884615
11 GAL NAG 0.465909 0.9
12 NM9 NAG 0.463158 0.87037
13 C4W NAG FUC BMA MAN NAG 0.457627 0.821429
14 MAG 0.455696 0.88
15 2F8 0.455696 0.88
16 A2G NAG 0.454545 0.884615
17 A2G GAL NAG 0.453608 0.884615
18 MAN NAG 0.448276 0.9
19 NDG NAG 0.444444 0.867925
20 GAL NGA 0.444444 0.882353
21 MMA MAN 0.444444 0.7
22 NDG BMA MAN MAN NAG GAL NAG 0.443478 0.867925
23 NAG NAG BMA MAN MAN NAG GAL NAG 0.439655 0.867925
24 GDL NAG 0.438202 0.884615
25 GAL FUC A2G 0.4375 0.92
26 NDG GLA NAG GLC RAM 0.434783 0.867925
27 NDG NAG GLA NAG GLC RAM 0.434783 0.867925
28 MAN MAN NAG 0.43299 0.901961
29 GAL NGA A2G 0.425532 0.884615
30 3YW 0.425287 0.86
31 NDG GLA GLC NAG GLC RAM 0.423729 0.867925
32 NGA THR GAL NAG 0.422018 0.836364
33 C4W NAG FUC BMA MAN NAG GAL 0.421488 0.741935
34 BGC GAL NGA 0.421053 0.9
35 NDG NAG NAG NAG NAG 0.419355 0.867925
36 NAG NAG NAG NAG NAG 0.419355 0.867925
37 NAG NAG NAG NAG NAG NAG 0.419355 0.867925
38 NAG NAG NAG NAG NAG NAG NAG NAG 0.419355 0.867925
39 NDG BMA MAN MAN NAG MAN MAN 0.415254 0.884615
40 HSH A2G FUC 0.415094 0.779661
41 AXR BXY BXY BXY BXX BXX 0.413462 0.673077
42 A2G THR GAL NAG 0.412844 0.836364
43 AH0 NAG 0.41 0.857143
44 NAG NAG BMA MAN MAN NAG NAG 0.408333 0.839286
45 NAG NGO 0.408163 0.872727
46 BMA MAN NAG 0.408163 0.9
47 3QL 0.40625 0.888889
48 FHY 0.40566 0.839286
49 AMV NAG AMU NAG 0.40566 0.87037
50 C4W NAG FUC BMA MAN MAN NAG 0.403101 0.821429
51 NAG BMA MAN MAN NAG GAL NAG GAL 0.4 0.867925
52 NGT NAG 0.4 0.8
53 NG1 0.4 0.688525
54 GN1 0.4 0.688525
Similar Ligands (3D)
Ligand no: 1; Ligand: GYP GZL NAG; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4RGA; Ligand: GYP GZL NAG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4rga.bio2) has 14 residues
No: Leader PDB Ligand Sequence Similarity
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