Receptor
PDB id Resolution Class Description Source Keywords
4RH5 1.6 Å EC: 3.1.3.48 CRYSTAL STRUCTURE OF PTPN3 (PTPH1) IN COMPLEX WITH EPS15 PTY PEPTIDE HOMO SAPIENS ALPHA BETA HYDROLASE HYDROLASE-PROTEIN BINDING COMPLEX
Ref.: SUBSTRATE SPECIFICITY AND PLASTICITY OF FERM-CONTAI PROTEIN TYROSINE PHOSPHATASES. STRUCTURE 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PHE SER ALA PTR PRO SER GLU GLU ASP B:846;
Valid;
Atoms found LESS than expected: % Diff = 0;
Kd = 127.3 nM
733.692 n/a P(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4RH5 1.6 Å EC: 3.1.3.48 CRYSTAL STRUCTURE OF PTPN3 (PTPH1) IN COMPLEX WITH EPS15 PTY PEPTIDE HOMO SAPIENS ALPHA BETA HYDROLASE HYDROLASE-PROTEIN BINDING COMPLEX
Ref.: SUBSTRATE SPECIFICITY AND PLASTICITY OF FERM-CONTAI PROTEIN TYROSINE PHOSPHATASES. STRUCTURE 2015
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 28 families.
1 4S0G - PHE SER ALA PTR VAL SER GLU GLU ASP n/a n/a
2 4RH9 - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
3 4RHG - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
4 4RH5 Kd = 127.3 nM PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 26 families.
1 4S0G - PHE SER ALA PTR VAL SER GLU GLU ASP n/a n/a
2 4RH9 - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
3 4RHG - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
4 4RH5 Kd = 127.3 nM PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
50% Homology Family (138)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 16 families.
1 1L8G - DBD C18 H14 N2 O9 S2 c1ccc2c(c1....
2 2CNI ic50 = 21 nM IZF C31 H34 Cl N3 O10 S2 COC(=O)c1c....
3 2F6Y ic50 = 134.8 uM ENT C16 H23 N3 O6 S CC(C)(C)OC....
4 2F6T Ki = 24 uM 1C2 C16 H23 N3 O6 S CC(C)(C)OC....
5 1NL9 - 989 C29 H31 N3 O7 CCCCCNC(=O....
6 2CM7 ic50 = 210 nM IZD C23 H26 N4 O6 S CC(=O)N[C@....
7 1C83 Ki = 14 uM OAI C11 H8 N2 O5 c1c[nH]c2c....
8 2AZR Ki = 230 uM 982 C10 H7 N O5 S c1cc2c(c(s....
9 1PH0 - 418 C34 H35 N3 O12 COC(=O)c1c....
10 1Q6N ic50 = 0.023 uM P90 C31 H25 F2 N4 O3 P S c1ccc(cc1)....
11 1Q6S ic50 = 12 nM 214 C38 H32 F2 N4 O6 P2 Cc1ccc2cc(....
12 1KAK ic50 = 26 uM FNP C12 H10 F4 O6 P2 c1cc(cc2c1....
13 2HB1 Ki = 160 uM 512 C7 H5 Br O5 S c1c(c(c(s1....
14 1PTV - PTR C9 H12 N O6 P c1cc(ccc1C....
15 1BZH Ki = 0.17 uM ASP ALA ASP GLU FLT LEU AEA n/a n/a
16 2CNE ic50 = 1.7 nM DFJ C28 H29 F4 N3 O9 P2 c1ccc(cc1)....
17 1XBO Ki = 6.9 uM IX1 C22 H19 N O8 COC(=O)c1c....
18 2F6Z ic50 = 4.8 uM UN5 C20 H24 N4 O8 S2 CNC(=O)[C@....
19 2CMA ic50 = 185 nM F20 C28 H28 N4 O6 S c1ccc(cc1)....
20 1PTY - PTR C9 H12 N O6 P c1cc(ccc1C....
21 1C88 Ki = 5.1 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
22 1ECV Ki = 14 uM 878 C9 H6 I N O5 c1cc(c(cc1....
23 2F6V ic50 = 37 uM SK2 C19 H21 N3 O6 S CNC(=O)[C@....
24 2CNF ic50 = 240 nM F32 C25 H21 N5 O3 S2 c1ccc2c(c1....
25 1ONZ - 968 C19 H13 N O6 c1ccc(c(c1....
26 2QBS Ki = 0.21 uM 024 C19 H20 Br N O5 S c1cc(cc(c1....
27 2VEV ic50 = 1300 nM IZ2 C28 H25 F3 N4 O5 S2 c1ccc(cc1)....
28 4Y14 Ki = 40 nM C0A C12 H16 Br F2 N2 O6 P S CNC(=O)[C@....
29 1ONY - 588 C27 H32 N4 O9 S CCCCCNC(=O....
30 1NNY - 515 C40 H37 N3 O10 CC(=O)N[C@....
31 2ZN7 Kd = 13 nM 410 C26 H24 Br N O6 S c1ccc(cc1)....
32 2VEU ic50 = 2900 nM IZ1 C27 H23 F3 N4 O5 S2 c1ccc(cc1)....
33 1JF7 - TBH C31 H47 N3 O9 CCCCCN[C@@....
34 5KAD Kd = 37 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
35 5KA3 Kd = 26 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
36 3EAX Ki = 12 uM LZP C38 H34 N2 O8 c1ccc(cc1)....
37 1QXK Ki ~ 9 uM 429 C25 H30 N2 O10 CC(=O)N[C@....
38 2QBR Ki = 0.47 uM 910 C20 H16 Br N O5 S c1ccc(cc1)....
39 1T48 ic50 = 350 uM BB3 C19 H17 Br2 N O5 S CCc1c(c2cc....
40 1PYN Ki = 3.2 uM 941 C29 H36 N2 O12 CC(C)(C)OC....
41 2FJN ic50 = 39 nM 073 C32 H28 F2 N3 O5 P COC(=O)c1c....
42 2F71 ic50 = 2.5 uM UN7 C21 H23 N3 O7 S CNC(=O)[C@....
43 1Q6P ic50 = 3 nM 213 C34 H29 F2 N3 O6 P2 c1ccc(cc1)....
44 1WAX ic50 = 86 uM LO1 C9 H10 N2 O3 c1cc(ccc1C....
45 2CNH ic50 = 59 nM IZB C27 H27 N5 O6 S2 CN1CCOc2c1....
46 1Q6T ic50 = 7 nM 600 C43 H42 F2 N4 O7 P2 CC(C)C[C@@....
47 2VEX ic50 = 130 nM IZ4 C28 H29 F N4 O5 S2 c1ccc(cc1)....
48 1Q6J ic50 = 0.016 uM 335 C29 H25 F4 N3 O6 P2 c1ccc(cc1)....
49 3EB1 Ki = 16 uM LZQ C24 H21 N O4 c1ccc(cc1)....
50 1G7F Ki = 3.4 uM INZ C27 H33 N3 O9 CCCCCNC(=O....
51 2ZMM Ki = 25 nM 35B C21 H23 Br N2 O6 S CNC(=O)N(c....
52 1AAX - BPM C13 H14 O8 P2 c1cc(ccc1C....
53 1BZC Ki = 12 uM TPI C17 H17 F2 N2 O7 P c1cc(cc2c1....
54 2QBQ Ki = 0.036 uM 4B3 C23 H28 Br N O5 S CC1(CC(CC(....
55 5K9W Kd = 26 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
56 6B8Z - FRJ C26 H19 Br2 N3 O7 S3 CCc1c(c2cc....
57 2CMC ic50 = 1750 nM DFM C21 H24 F2 N3 O6 P CC(=O)N[C@....
58 2CMB ic50 = 65 nM F17 C32 H29 N5 O9 S2 c1ccc(cc1)....
59 2F70 ic50 = 33.5 uM UN6 C16 H19 N3 O7 S2 c1cc(cc(c1....
60 1KAV Ki = 1.5 uM FEP C18 H20 F4 O6 P2 c1cc(ccc1C....
61 2NT7 Ki = 0.3 uM 902 C25 H25 Br N6 O5 S2 c1ccc(cc1)....
62 1C87 Ki = 63 uM OPA C10 H9 N O6 S C1COCc2c1c....
63 5KAB - OTA C10 H10 N2 O5 S C1CNCc2c1c....
64 2H4K Ki = 3.2 uM 509 C13 H9 Br O5 S c1ccc(cc1)....
65 1G7G Ki = 0.25 uM INX C30 H37 N3 O10 CCCCCNC(=O....
66 5T19 - 73U C16 H17 N3 O3 S Cc1ccc(cc1....
67 1C86 Ki = 20 uM OPA C10 H9 N O6 S C1COCc2c1c....
68 2H4G Ki = 0.3 uM 694 C13 H9 Br O6 S c1cc(ccc1c....
69 5KA1 Kd = 33 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
70 2BGE ic50 = 1608 uM T2D C8 H8 N2 O3 S c1ccc(cc1)....
71 1PXH - SNA C32 H41 F4 N5 O13 P2 S c1cc(ccc1C....
72 2QBP Ki = 0.004 uM 527 C25 H25 Br N2 O7 S2 c1ccc(cc1)....
73 1Q6M ic50 = 0.013 uM P27 C29 H23 F6 N3 O6 P2 c1ccc2c(c1....
74 2VEW ic50 = 64 nM IZ3 C27 H22 F2 N4 O5 S2 c1ccc(c(c1....
75 2B07 Ki = 0.37 uM 598 C25 H24 N2 O7 S3 c1ccc(cc1)....
76 3I7Z - ASP ALA ASP GLU TYR LEU n/a n/a
77 1EEN - ALA ASP PBF PTR LEU ILE PRO n/a n/a
78 1LQF - BGD C32 H34 F4 N4 O12 P2 c1ccc(cc1)....
79 2BGD ic50 = 2.47 uM T1D C15 H14 N2 O4 S COc1ccc(cc....
80 1T49 ic50 = 22 uM 892 C23 H18 Br2 N2 O7 S2 CCc1c(c2cc....
81 2NTA Ki = 16 uM 521 C12 H9 Cl N2 O3 S2 c1ccc(cc1)....
82 1NWL - 964 C19 H27 N5 O5 S2 CC(=O)NCCS....
83 2VEY ic50 = 43 nM IZ5 C29 H29 F N4 O5 S2 c1ccc(cc1)....
84 5KA7 Kd = 45 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
85 2FJM ic50 = 142 nM 073 C32 H28 F2 N3 O5 P COC(=O)c1c....
86 1GFY - COL C10 H9 N O5 S2 C1CSCc2c1c....
87 1NZ7 - 901 C32 H40 N4 O10 S CCc1cc(ccc....
88 3CWE ic50 = 0.12 uM 825 C22 H18 Br F2 O4 P c1ccc(cc1)....
89 2CNG ic50 = 110 nM IZE C21 H16 F6 N4 O4 S c1cc(ccc1C....
90 2CM8 ic50 = 1350 nM F16 C9 H7 N O4 S c1cc(cc(c1....
91 1BZJ Ki = 22 uM PIC C12 H9 F2 O5 P c1cc(cc2c1....
92 2F6W - UN3 C10 H11 N3 O3 S Cn1c(cc(n1....
93 1NO6 - 794 C19 H13 N O5 c1ccc2c(c1....
94 1C84 Ki = 9.9 uM 761 C13 H9 N O5 c1ccc2cc(c....
95 5KA9 Kd = 39 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
96 4GE6 ic50 = 75 nM B26 C42 H45 Br F2 I N6 O11 P Cc1cc(ccc1....
97 4GE5 ic50 = 0.27 uM A89 C30 H31 Br F2 I N4 O7 P Cc1cc(ccc1....
98 4GE2 ic50 = 0.9 uM 75A C24 H28 F2 I N4 O7 P CC(=O)N[C@....
99 3D44 - LEU ASP GLU PTR VAL ALA THR ARG n/a n/a
100 3D42 - LEU THR GLU PTR VAL ALA THR ARG n/a n/a
101 3O5X ic50 = 5.5 uM JZG C33 H27 N5 O4 Cn1c2cc(c(....
102 4RDD ic50 = 16.8 uM 3LU C21 H22 N3 O8 S2 c1ccc(cc1)....
103 4RH5 Kd = 127.3 nM PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
104 6BMU - DZV C23 H17 Cl N4 O3 COc1cccc(c....
105 6BMX - DYV C29 H24 Cl N5 O6 COc1cccc(c....
106 6MDD ic50 = 47 uM JE7 C12 H8 Cl2 N4 S c1cc(c(c(c....
107 6BMV - DZS C23 H15 Cl N4 O4 c1ccc(c(c1....
108 6MD9 - JEJ C22 H20 Cl N3 O2 CN1C(=Cc2c....
109 6BN5 - DZJ C17 H11 Cl N2 O2 S c1ccc(cc1)....
110 6BMY - DYV C29 H24 Cl N5 O6 COc1cccc(c....
111 6MDC ic50 = 0.036 uM JEA C23 H29 Cl N8 O2 C[C@H]1[C@....
112 5EHR Kd = 73 nM 5OD C16 H19 Cl2 N5 CC1(CCN(CC....
113 6MD7 ic50 = 0.181 uM JE1 C17 H20 F3 N5 O S CC1(CCN(CC....
114 6BMW - DZS C23 H15 Cl N4 O4 c1ccc(c(c1....
115 6BMR - DZV C23 H17 Cl N4 O3 COc1cccc(c....
116 6CMR - 5OD C16 H19 Cl2 N5 CC1(CCN(CC....
117 6MDA - JED C20 H14 Br N3 O2 Cc1ccc(cc1....
118 6MDB ic50 = 0.064 uM JE4 C18 H20 Cl2 N6 O CC1(CCN(CC....
119 5EHP ic50 = 12 uM 5OA C16 H19 Cl2 N5 C[C@@H]1CN....
120 3QCH ic50 = 3.3 uM NX2 C13 H11 Cl2 N O3 S3 CS(=O)(=O)....
121 3QCI ic50 = 3.8 uM NX3 C18 H14 Cl2 N2 O3 S3 c1cc(cc(c1....
122 3QCJ ic50 = 0.5 uM NX4 C20 H15 Cl2 N O6 S3 COc1ccc(cc....
123 3QCL ic50 = 4 uM NXV C18 H14 Cl2 O3 S c1cc(c(cc1....
124 3QCE ic50 = 6.6 uM NXY C12 H8 Cl2 O2 S2 c1cc(c(cc1....
125 3QCM - NXW C27 H25 Cl2 N3 O3 S CNCCNCC(=O....
126 3QCF ic50 = 6.6 uM NXY C12 H8 Cl2 O2 S2 c1cc(c(cc1....
127 3QCG - NX1 C12 H8 Br Cl O2 S2 c1cc(c(cc1....
128 3QCK ic50 = 5.8 uM NX5 C14 H10 Cl2 O2 S c1ccc(c(c1....
129 5OVX Ki = 7.8 uM AY5 C20 H17 Cl2 O5 P c1cc(cc(c1....
130 6H8R - FWB C10 H12 F3 N O C[C@@H](Cc....
131 5OW1 Ki = 20 uM AY8 C19 H21 F2 O4 P c1cc(cc(c1....
132 4J51 ic50 = 259 nM N75 C28 H20 Cl N O6 c1cc(cc(c1....
133 2I5X - UA5 C8 H11 N O3 S CCc1ccc(cc....
134 2I4H - UA1 C24 H32 N4 O8 S CC(C)(C)OC....
135 2H02 ic50 = 0.32 uM 2UN C19 H21 N O7 S COC(=O)C(C....
136 2I4G - UA1 C24 H32 N4 O8 S CC(C)(C)OC....
137 2H04 ic50 = 0.07 uM 4UN C21 H21 N5 O5 S Cc1nc(no1)....
138 2H03 ic50 = 0.09 uM 3UN C21 H32 N2 O9 S CCOC(=O)C(....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PHE SER ALA PTR PRO SER GLU GLU ASP; Similar ligands found: 56
No: Ligand ECFP6 Tc MDL keys Tc
1 PHE SER ALA PTR PRO SER GLU GLU ASP 1 1
2 PHE SER ALA PTR VAL SER GLU GLU ASP 0.622951 0.757143
3 PHE LEU PRO SER ASP PHE PHE PRO SER VAL 0.492958 0.783784
4 ACE LEU TYR ALA SER SER ASN PRO ALA PTR 0.490066 0.906667
5 PHE ALA PRO GLY PHE PHE PRO TYR LEU 0.483221 0.77027
6 LYS PRO PHE PTR VAL ASN VAL NH2 0.467105 0.890411
7 PHE ASN PHE PRO GLN ILE THR 0.465278 0.756757
8 PTR VAL PRO MET LEU 0.464286 0.789474
9 GLN LEU SER PRO PHE PRO PHE ASP LEU 0.463087 0.77027
10 ARG SEP PRO VAL PHE SER 0.460526 0.813333
11 LEU PRO SER PHE GLU THR ALA LEU 0.459459 0.767123
12 PHE ALA PRO GLY ASN TYR PRO ALA LEU 0.458065 0.776316
13 SER ASP ILE LEU PHE PRO ALA ASP SER 0.452055 0.743243
14 ASP PHE GLU GLU ILE PRO GLY GLU PTR 0.450617 0.864865
15 ASN TRP SER HIS PRO GLN PHE GLU LYS 0.45 0.753425
16 PRO ALA PRO PHE ALA SER ALA 0.45 0.774648
17 LEU ASN PHE PRO ILE SER PRO 0.45 0.736842
18 PHE TYR ALA PRO GLU PRO ILE THR SER LEU 0.45 0.802632
19 GLU GLY GLN PTR GLN PRO GLN PRO ALA 0.441558 0.859155
20 LEU SER SER PRO VAL THR LYS SER PHE 0.440789 0.777778
21 MAA LYS PRO PHE 0.439394 0.676056
22 TYR SEP PRO THR SEP PRO SER 0.438849 0.942857
23 THR PRO PRO SER PRO PHE 0.438462 0.8
24 ALA PRO SER PTR VAL ASN VAL GLN ASN 0.437909 0.891892
25 TYR MET PHE PRO ASN ALA PRO TYR LEU 0.436709 0.725
26 PHE GLU ALA ILE PRO ALA GLU TYR LEU 0.435897 0.743243
27 GLU VAL PTR GLU SER PRO 0.433566 0.902778
28 PHE ALA PRO GLY ASN TYI PRO ALA LEU 0.43125 0.728395
29 ARG VAL ILE PTR PHE VAL PRO LEU ASN ARG 0.422535 0.861111
30 VAL ORN LEU DPN PRO VAL ORN LEU DPN PRO 0.421769 0.722222
31 LYS PRO PHE PTR VAL ASN VAL GLU PHE 0.421687 0.878378
32 PHE PRO ARG 0.418605 0.643836
33 SER THR SEP PRO THR PHE ASN LYS 0.417178 0.875
34 PHE LEU PRO HIS ALY TYR ASP VAL LYS LEU 0.416185 0.727273
35 GLY THR SER SER PRO SER ALA ASP 0.414815 0.746479
36 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE 0.413174 0.808219
37 SER TYR SEP PRO THR SEP PRO SEP TYR SER 0.412162 0.942029
38 GLY ARG PRO ARG THR THR SER PHE ALA GLU 0.412121 0.74026
39 ASP PHE GLU GLU ILE PRO GLU GLU TYS 0.411392 0.746988
40 PHE PRO THR LYS ASP VAL ALA LEU 0.411392 0.743243
41 ARG VAL SER PRO SER THR SER TYR THR PRO 0.411348 0.842857
42 GLN ASN GLY PTR VAL ASN PRO THR TYR 0.410256 0.917808
43 ALA GLU GLY PHE PRO ALA TPO VAL 0.408759 0.802817
44 TYR PRO PHE PHE NH2 0.407692 0.794118
45 LYS THR PHE PRO PRO THR GLU PRO LYS 0.407643 0.777778
46 TYR GLN PHE GLY PRO ASP PHE PRO ILE ALA 0.407186 0.783784
47 PHE ASN ARG PRO VAL 0.406897 0.666667
48 PRO THR SEP PRO SER TYR 0.406667 0.956522
49 TYR MET ASP PHE ASP ASP ASP ILE PRO PHE 0.406504 0.652778
50 PHE SER ASP PRO TRP GLY GLY 0.405063 0.780822
51 PHE ALA PRO GLY ASN TYR PRO ALA TRP 0.404624 0.776316
52 GLY SER ASP PRO PHE LYS 0.404255 0.760563
53 LEU PHE GLY TYR PRO VAL TYR VAL 0.402597 0.767123
54 ALA THR PRO PHE GLN GLU 0.401575 0.753623
55 ACE GLY PHE GLY VAL VAL PRO SER PHE TYR 0.401361 0.774648
56 GLN ASN GLY PTR GLU ASN PRO THR TYR 0.401274 0.915493
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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