Receptor
PDB id Resolution Class Description Source Keywords
4RH9 1.6 Å EC: 3.1.3.48 CRYSTAL STRUCTURE OF PTPN3 (PTPH1) H812F, M883G MUTANT IN CO EPS15 PTYR849 PEPTIDE HOMO SAPIENS ALPHA BETA HYDROLASE-PROTEIN BINDING COMPLEX
Ref.: SUBSTRATE SPECIFICITY AND PLASTICITY OF FERM-CONTAI PROTEIN TYROSINE PHOSPHATASES. STRUCTURE 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PHE SER ALA PTR PRO SER GLU GLU ASP B:846;
Valid;
Atoms found LESS than expected: % Diff = 0.115;
submit data
989.906 n/a [P+](...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4RH5 1.6 Å EC: 3.1.3.48 CRYSTAL STRUCTURE OF PTPN3 (PTPH1) IN COMPLEX WITH EPS15 PTY PEPTIDE HOMO SAPIENS ALPHA BETA HYDROLASE HYDROLASE-PROTEIN BINDING COMPLEX
Ref.: SUBSTRATE SPECIFICITY AND PLASTICITY OF FERM-CONTAI PROTEIN TYROSINE PHOSPHATASES. STRUCTURE 2015
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 24 families.
1 4S0G - PHE SER ALA PTR VAL SER GLU GLU ASP n/a n/a
2 4RH9 - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
3 4RHG - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
4 4RH5 Kd = 127.3 nM PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 23 families.
1 4S0G - PHE SER ALA PTR VAL SER GLU GLU ASP n/a n/a
2 4RH9 - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
3 4RHG - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
4 4RH5 Kd = 127.3 nM PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
50% Homology Family (122)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 1L8G - DBD C18 H14 N2 O9 S2 c1ccc2c(c1....
2 2CNI ic50 = 21 nM IZF C31 H34 Cl N3 O10 S2 COC(=O)c1c....
3 2F6Y ic50 = 134.8 uM ENT C16 H23 N3 O6 S CC(C)(C)OC....
4 2F6T Ki = 24 uM 1C2 C16 H23 N3 O6 S CC(C)(C)OC....
5 1NL9 - 989 C29 H31 N3 O7 CCCCCNC(=O....
6 2CM7 ic50 = 210 nM IZD C23 H26 N4 O6 S CC(=O)N[C@....
7 1C83 Ki = 14 uM OAI C11 H8 N2 O5 c1c[nH]c2c....
8 2AZR Ki = 230 uM 982 C10 H7 N O5 S c1cc2c(c(s....
9 1PH0 - 418 C34 H35 N3 O12 COC(=O)c1c....
10 1Q6N ic50 = 0.023 uM P90 C31 H25 F2 N4 O3 P S c1ccc(cc1)....
11 1Q6S ic50 = 12 nM 214 C38 H32 F2 N4 O6 P2 Cc1ccc2cc(....
12 1KAK ic50 = 26 uM FNP C12 H10 F4 O6 P2 c1cc(cc2c1....
13 2HB1 Ki = 160 uM 512 C7 H5 Br O5 S c1c(c(c(s1....
14 1PTV - PTR C9 H12 N O6 P c1cc(ccc1C....
15 1BZH Ki = 0.17 uM ASP ALA ASP GLU FLT LEU AEA n/a n/a
16 2CNE ic50 = 1.7 nM DFJ C28 H29 F4 N3 O9 P2 c1ccc(cc1)....
17 1XBO Ki = 6.9 uM IX1 C22 H19 N O8 COC(=O)c1c....
18 2F6Z ic50 = 4.8 uM UN5 C20 H24 N4 O8 S2 CNC(=O)[C@....
19 2CMA ic50 = 185 nM F20 C28 H28 N4 O6 S c1ccc(cc1)....
20 1PTY - PTR C9 H12 N O6 P c1cc(ccc1C....
21 1C88 Ki = 5.1 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
22 1ECV Ki = 14 uM 878 C9 H6 I N O5 c1cc(c(cc1....
23 2F6V ic50 = 37 uM SK2 C19 H21 N3 O6 S CNC(=O)[C@....
24 2CNF ic50 = 240 nM F32 C25 H21 N5 O3 S2 c1ccc2c(c1....
25 1ONZ - 968 C19 H13 N O6 c1ccc(c(c1....
26 2QBS Ki = 0.21 uM 024 C19 H20 Br N O5 S c1cc(cc(c1....
27 2VEV ic50 = 1300 nM IZ2 C28 H25 F3 N4 O5 S2 c1ccc(cc1)....
28 4Y14 Ki = 40 nM C0A C12 H16 Br F2 N2 O6 P S CNC(=O)[C@....
29 1ONY - 588 C27 H32 N4 O9 S CCCCCNC(=O....
30 1NNY - 515 C40 H37 N3 O10 CC(=O)N[C@....
31 2ZN7 Kd = 13 nM 410 C26 H24 Br N O6 S c1ccc(cc1)....
32 2VEU ic50 = 2900 nM IZ1 C27 H23 F3 N4 O5 S2 c1ccc(cc1)....
33 1JF7 - TBH C31 H47 N3 O9 CCCCCN[C@@....
34 5KAD Kd = 37 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
35 5KA3 Kd = 26 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
36 3EAX Ki = 12 uM LZP C38 H34 N2 O8 c1ccc(cc1)....
37 1QXK Ki ~ 9 uM 429 C25 H30 N2 O10 CC(=O)N[C@....
38 2QBR Ki = 0.47 uM 910 C20 H16 Br N O5 S c1ccc(cc1)....
39 1T48 ic50 = 350 uM BB3 C19 H17 Br2 N O5 S CCc1c(c2cc....
40 1PYN Ki = 3.2 uM 941 C29 H36 N2 O12 CC(C)(C)OC....
41 2FJN ic50 = 39 nM 073 C32 H28 F2 N3 O5 P COC(=O)c1c....
42 2F71 ic50 = 2.5 uM UN7 C21 H23 N3 O7 S CNC(=O)[C@....
43 1Q6P ic50 = 3 nM 213 C34 H29 F2 N3 O6 P2 c1ccc(cc1)....
44 1WAX ic50 = 86 uM LO1 C9 H10 N2 O3 c1cc(ccc1C....
45 2CNH ic50 = 59 nM IZB C27 H27 N5 O6 S2 CN1CCOc2c1....
46 1Q6T ic50 = 7 nM 600 C43 H42 F2 N4 O7 P2 CC(C)C[C@@....
47 2VEX ic50 = 130 nM IZ4 C28 H29 F N4 O5 S2 c1ccc(cc1)....
48 1Q6J ic50 = 0.016 uM 335 C29 H25 F4 N3 O6 P2 c1ccc(cc1)....
49 3EB1 Ki = 16 uM LZQ C24 H21 N O4 c1ccc(cc1)....
50 1G7F Ki = 3.4 uM INZ C27 H33 N3 O9 CCCCCNC(=O....
51 2ZMM Ki = 25 nM 35B C21 H23 Br N2 O6 S CNC(=O)N(c....
52 1AAX - BPM C13 H14 O8 P2 c1cc(ccc1C....
53 1BZC Ki = 12 uM TPI C17 H17 F2 N2 O7 P c1cc(cc2c1....
54 2QBQ Ki = 0.036 uM 4B3 C23 H28 Br N O5 S CC1(CC(CC(....
55 5K9W Kd = 26 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
56 2CMC ic50 = 1750 nM DFM C21 H24 F2 N3 O6 P CC(=O)N[C@....
57 2CMB ic50 = 65 nM F17 C32 H29 N5 O9 S2 c1ccc(cc1)....
58 2F70 ic50 = 33.5 uM UN6 C16 H19 N3 O7 S2 c1cc(cc(c1....
59 1KAV Ki = 1.5 uM FEP C18 H20 F4 O6 P2 c1cc(ccc1C....
60 2NT7 Ki = 0.3 uM 902 C25 H25 Br N6 O5 S2 c1ccc(cc1)....
61 1C87 Ki = 63 uM OPA C10 H9 N O6 S C1COCc2c1c....
62 5KAB - OTA C10 H10 N2 O5 S C1CNCc2c1c....
63 2H4K Ki = 3.2 uM 509 C13 H9 Br O5 S c1ccc(cc1)....
64 1G7G Ki = 0.25 uM INX C30 H37 N3 O10 CCCCCNC(=O....
65 5T19 - 73U C16 H17 N3 O3 S Cc1ccc(cc1....
66 1C86 Ki = 20 uM OPA C10 H9 N O6 S C1COCc2c1c....
67 2H4G Ki = 0.3 uM 694 C13 H9 Br O6 S c1cc(ccc1c....
68 5KA1 Kd = 33 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
69 2BGE ic50 = 1608 uM T2D C8 H8 N2 O3 S c1ccc(cc1)....
70 1PXH - SNA C32 H41 F4 N5 O13 P2 S c1cc(ccc1C....
71 2QBP Ki = 0.004 uM 527 C25 H25 Br N2 O7 S2 c1ccc(cc1)....
72 1Q6M ic50 = 0.013 uM P27 C29 H23 F6 N3 O6 P2 c1ccc2c(c1....
73 2VEW ic50 = 64 nM IZ3 C27 H22 F2 N4 O5 S2 c1ccc(c(c1....
74 2B07 Ki = 0.37 uM 598 C25 H24 N2 O7 S3 c1ccc(cc1)....
75 3I7Z - ASP ALA ASP GLU TYR LEU n/a n/a
76 1EEN - ALA ASP PBF PTR LEU ILE PRO n/a n/a
77 1LQF - BGD C32 H34 F4 N4 O12 P2 c1ccc(cc1)....
78 2BGD ic50 = 2.47 uM T1D C15 H14 N2 O4 S COc1ccc(cc....
79 1T49 ic50 = 22 uM 892 C23 H18 Br2 N2 O7 S2 CCc1c(c2cc....
80 2NTA Ki = 16 uM 521 C12 H9 Cl N2 O3 S2 c1ccc(cc1)....
81 1NWL - 964 C19 H27 N5 O5 S2 CC(=O)NCCS....
82 2VEY ic50 = 43 nM IZ5 C29 H29 F N4 O5 S2 c1ccc(cc1)....
83 5KA7 Kd = 45 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
84 2FJM ic50 = 142 nM 073 C32 H28 F2 N3 O5 P COC(=O)c1c....
85 1GFY - COL C10 H9 N O5 S2 C1CSCc2c1c....
86 1NZ7 - 901 C32 H40 N4 O10 S CCc1cc(ccc....
87 3CWE ic50 = 0.12 uM 825 C22 H18 Br F2 O4 P c1ccc(cc1)....
88 2CNG ic50 = 110 nM IZE C21 H16 F6 N4 O4 S c1cc(ccc1C....
89 2CM8 ic50 = 1350 nM F16 C9 H7 N O4 S c1cc(cc(c1....
90 1BZJ Ki = 22 uM PIC C12 H9 F2 O5 P c1cc(cc2c1....
91 2F6W - UN3 C10 H11 N3 O3 S Cn1c(cc(n1....
92 1NO6 - 794 C19 H13 N O5 c1ccc2c(c1....
93 1C84 Ki = 9.9 uM 761 C13 H9 N O5 c1ccc2cc(c....
94 5KA9 Kd = 39 uM OTA C10 H10 N2 O5 S C1CNCc2c1c....
95 4GE6 ic50 = 75 nM B26 C42 H45 Br F2 I N6 O11 P Cc1cc(ccc1....
96 4GE5 ic50 = 0.27 uM A89 C30 H31 Br F2 I N4 O7 P Cc1cc(ccc1....
97 4GE2 ic50 = 0.9 uM 75A C24 H28 F2 I N4 O7 P CC(=O)N[C@....
98 3D44 - LEU ASP GLU PTR VAL ALA THR ARG n/a n/a
99 3D42 - LEU THR GLU PTR VAL ALA THR ARG n/a n/a
100 3O5X ic50 = 5.5 uM JZG C33 H27 N5 O4 Cn1c2cc(c(....
101 4RDD ic50 = 16.8 uM 3LU C21 H22 N3 O8 S2 c1ccc(cc1)....
102 4RH9 - PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
103 4RH5 Kd = 127.3 nM PHE SER ALA PTR PRO SER GLU GLU ASP n/a n/a
104 3QCH ic50 = 3.3 uM NX2 C13 H11 Cl2 N O3 S3 CS(=O)(=O)....
105 3QCI ic50 = 3.8 uM NX3 C18 H14 Cl2 N2 O3 S3 c1cc(cc(c1....
106 3QCJ ic50 = 0.5 uM NX4 C20 H15 Cl2 N O6 S3 COc1ccc(cc....
107 3QCL ic50 = 4 uM NXV C18 H14 Cl2 O3 S c1cc(c(cc1....
108 3QCE ic50 = 6.6 uM NXY C12 H8 Cl2 O2 S2 c1cc(c(cc1....
109 3QCM - NXW C27 H25 Cl2 N3 O3 S CNCCNCC(=O....
110 3QCF ic50 = 6.6 uM NXY C12 H8 Cl2 O2 S2 c1cc(c(cc1....
111 3QCG - NX1 C12 H8 Br Cl O2 S2 c1cc(c(cc1....
112 3QCK ic50 = 5.8 uM NX5 C14 H10 Cl2 O2 S c1ccc(c(c1....
113 5EHR Kd = 73 nM 5OD C16 H19 Cl2 N5 CC1(CCN(CC....
114 5EHP ic50 = 12 uM 5OA C16 H19 Cl2 N5 C[C@@H]1CN....
115 2CJZ - PTR C9 H12 N O6 P c1cc(ccc1C....
116 4J51 ic50 = 259 nM N75 C28 H20 Cl N O6 c1cc(cc(c1....
117 2I5X - UA5 C8 H11 N O3 S CCc1ccc(cc....
118 2I4H - UA1 C24 H32 N4 O8 S CC(C)(C)OC....
119 2H02 ic50 = 0.32 uM 2UN C19 H21 N O7 S COC(=O)C(C....
120 2I4G - UA1 C24 H32 N4 O8 S CC(C)(C)OC....
121 2H04 ic50 = 0.07 uM 4UN C21 H21 N5 O5 S Cc1nc(no1)....
122 2H03 ic50 = 0.09 uM 3UN C21 H32 N2 O9 S CCOC(=O)C(....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PHE SER ALA PTR PRO SER GLU GLU ASP; Similar ligands found: 82
No: Ligand ECFP6 Tc MDL keys Tc
1 PHE SER ALA PTR PRO SER GLU GLU ASP 1 1
2 SER SER PHE TYR PRO SEP ALA GLU GLY 0.657143 0.971014
3 PHE SER ALA PTR VAL SER GLU GLU ASP 0.558824 0.732394
4 ASP PHE GLU GLU ILE PRO GLY GLU PTR 0.521212 0.890411
5 LYS PRO PHE PTR VAL ASN VAL GLU PHE 0.509091 0.878378
6 PHE LEU PRO SER ASP PHE PHE PRO SER VAL 0.503356 0.808219
7 GLU VAL PTR GLU SER PRO 0.5 0.929577
8 ARG SER ALA SEP GLU PRO SER LEU 0.5 0.772152
9 ASP PHE GLU GLU ILE PRO GLU GLU TYS 0.49375 0.7875
10 PHE GLU ALA ILE PRO ALA GLU TYR LEU 0.49375 0.767123
11 ALA PRO SER PTR VAL ASN VAL GLN ASN 0.493671 0.905405
12 PHE TYR ALA PRO GLU PRO ILE THR SER LEU 0.487952 0.826667
13 GLY TYR GLU ASN PRO THR TYR LYS PHE PHE 0.484848 0.833333
14 GLU GLY GLN PTR GLN PRO GLN PRO ALA 0.484277 0.873239
15 PHE SER HIS PRO GLN ASN THR 0.481013 0.797297
16 ASP TYR GLU PRO ILE PRO GLU GLU ALA PHE 0.478788 0.794521
17 ACE LEU TYR ALA SER SER ASN PRO ALA PTR 0.472393 0.92
18 GLN ASN GLY PTR GLU ASN PRO THR TYR 0.471698 0.915493
19 LYS PRO PHE PTR VAL ASN VAL NH2 0.469136 0.864865
20 ASN TRP SER HIS PRO GLN PHE GLU LYS 0.468354 0.675676
21 LEU TYR ALA SER PRO GLN LEU GLU GLY PHE 0.467836 0.821918
22 GLY ARG PRO ARG THR THR SER PHE ALA GLU 0.467066 0.753247
23 PTR VAL PRO MET LEU 0.463576 0.789474
24 PRO GLN PTR GLU PTR ILE PRO ALA 0.463415 0.851351
25 PHE ASN PHE PRO GLN ILE THR 0.461039 0.77027
26 SER ILE TYR PHE TPO PRO GLU LEU TYR ASP 0.457627 0.945205
27 ASP PHE GLU GLU ILE PRO GLU GLU TYS LEU 0.454023 0.790123
28 PRO GLN PTR GLU GLU ILE PRO ILE 0.448485 0.824324
29 SER ASP ILE LEU PHE PRO ALA ASP SER 0.44586 0.767123
30 SER ASN TRP SER HIS PRO GLN PHE GLU LYS 0.44382 0.76
31 GLY TYR GLN ASP TYR GLU PRO GLU ALA 0.442953 0.797101
32 LEU PRO PHE GLU LYS SER THR VAL MET 0.441176 0.74026
33 GLY THR SER SER PRO SER ALA ASP 0.440559 0.785714
34 PHE ALA PRO GLY PHE PHE PRO TYR LEU 0.438272 0.783784
35 PHE PRO THR LYS ASP VAL ALA LEU 0.438272 0.753425
36 TYR MET PHE PRO ASN ALA PRO TYR LEU 0.43787 0.7375
37 PHE ALA PRO GLY ASN TYR PRO ALA LEU 0.437126 0.789474
38 LYS THR PHE PRO PRO THR GLU PRO LYS 0.436364 0.788732
39 LEU PRO PHE GLU ARG ALA THR VAL MET 0.435028 0.674699
40 ASN ASP LYS TYR GLU PRO PHE TRP GLU 0.431694 0.77027
41 ARG SEP PRO VAL PHE SER 0.430303 0.779221
42 PHE LYS TPO GLU GLY PRO ASP SER ASP 0.428571 0.871429
43 LEU ASN PHE PRO ILE SER PRO 0.428571 0.75
44 LEU SER SER PRO VAL THR LYS SER PHE 0.428571 0.767123
45 SER HIS SEP SER PRO ALA SER LEU GLN 0.427746 0.805195
46 SER ALA GLU PRO VAL PRO LEU GLN LEU 0.425806 0.743243
47 ASP PHE GLU GLU ILE PRO GLY GLU TYR LEU 0.425287 0.783784
48 VAL ORN LEU DPN PRO VAL ORN LEU DPN PRO 0.424051 0.684932
49 TYR PRO SER LYS PRO ASP ASN PRO GLY GLU 0.423841 0.842857
50 TYR GLN PHE GLY PRO ASP PHE PRO ILE ALA 0.423729 0.797297
51 GLU SER ASP PRO ILE VAL ALA GLN TYR 0.423529 0.810811
52 PHE ALA PRO GLY ASN TYI PRO ALA LEU 0.421053 0.740741
53 ALA PRO ALA TRP LEU PHE GLU ALA 0.421053 0.684211
54 GLN LEU SER PRO PHE PRO PHE ASP LEU 0.420732 0.746667
55 ALA ILE ALA TYR PHE ILE PRO ASP GLN ALA 0.420732 0.791667
56 LEU PRO PHE GLU ARG ALA THR ILE MET 0.41989 0.666667
57 PRO ALA PRO PHE ALA SER ALA 0.419355 0.75
58 SER THR SEP PRO THR PHE ASN LYS 0.418605 0.863014
59 SER PHE PHE GLU ASP ASN PHE VAL PRO GLU 0.417722 0.808219
60 ARG VAL SER PRO SER THR SER TYR THR PRO 0.414474 0.816901
61 TYR SEP PRO THR SEP PRO SER 0.414474 0.942857
62 LYS GLN GLU PRO GLN GLU ILE ASP PHE 0.414201 0.675676
63 GLY SER ASP PRO PHE LYS 0.413333 0.785714
64 ALA PRO GLN PRO ALA PRO GLU ASN ALA TYR 0.412121 0.77027
65 ILE THR ASP GLN VAL PRO PHE SER VAL 0.411765 0.77027
66 GLN ASN GLY PTR VAL ASN PRO THR TYR 0.409639 0.917808
67 ASP PHE GLU GLU ILE PRO GLY GLU TYS LEU 0.409091 0.790123
68 GLN VAL PRO SER ASP PRO TYR ASN TYR 0.408537 0.810811
69 SER SER CYS PRO LEU SER LYS 0.408163 0.702703
70 ARG ILE PRO SER TYR ARG TYR ARG TYR 0.407186 0.772152
71 GLU PRO GLN ALA PRO TRP MET GLU 0.406977 0.65
72 ARG SER HIS SEP SER PRO ALA SER LEU GLN 0.406593 0.765432
73 LEU PHE GLY TYR PRO VAL TYR VAL 0.406061 0.791667
74 GLU PHE SER PRO 0.405797 0.768116
75 TYR LEU GLU PRO ALA PRO VAL THR ALA 0.404908 0.783784
76 PHE SER ASP PRO TRP GLY GLY 0.404762 0.805556
77 SER HIS SEP SER PRO ALA SER LEU 0.404762 0.802632
78 SER MET PRO GLU LEU SER PRO VAL LEU 0.403727 0.714286
79 SER GLU ASP GLU PHE TYR ASP ALA LEU SER 0.402516 0.666667
80 HIS HIS ALA SER PRO ARG LYS 0.402367 0.692308
81 THR PRO PRO SER PRO PHE 0.401361 0.8
82 LYS LEU PRO ALA GLN PHE TYR ILE LEU 0.4 0.746667
Similar Binding Sites (Proteins are less than 50% similar to leader)
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