Receptor
PDB id Resolution Class Description Source Keywords
4X1X 1.6 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF RHDVB P DOMAIN IN COMPLEX WITH LEWIS Y RABBIT HEMORRHAGIC DISEASE VIRUS MAJOR CAPSID PROTEIN CAPSID SPIKE PROTRUDING DOMAIN HBGA VIRAL PROTEIN
Ref.: STRUCTURAL ANALYSIS OF A RABBIT HEMORRHAGIC DISEASE BINDING TO HISTO-BLOOD GROUP ANTIGENS. J.VIROL. V. 89 2378 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL B:603;
A:602;
A:603;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
35.453 Cl [Cl-]
EDO B:601;
B:602;
A:601;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
NDG GAL FUC C:1;
Valid;
none;
submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4X1Z 1.36 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF RHDVB P DOMAIN IN COMPLEX WITH H TYPE 2 RABBIT HEMORRHAGIC DISEASE VIRUS MAJOR CAPSID PROTEIN CAPSID SPIKE PROTRUDING DOMAIN HBGA VIRAL PROTEIN
Ref.: STRUCTURAL ANALYSIS OF A RABBIT HEMORRHAGIC DISEASE BINDING TO HISTO-BLOOD GROUP ANTIGENS. J.VIROL. V. 89 2378 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 4X1Z - NDG GAL FUC n/a n/a
2 4X1X - NDG GAL FUC n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 4X1Z - NDG GAL FUC n/a n/a
2 4X1X - NDG GAL FUC n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 4X1Z - NDG GAL FUC n/a n/a
2 4X1X - NDG GAL FUC n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: NDG GAL FUC; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: NDG GAL FUC; Similar ligands found: 9
No: Ligand Similarity coefficient
1 NDG GAL FUC 1.0000
2 NAG GAL FUC 0.9801
3 GLC GAL FUC 0.9220
4 BGC FUC GAL 0.9214
5 BGC GAL FUC 0.9106
6 NAG FUC GAL 0.8990
7 MAG FUC GAL 0.8936
8 NDG FUC GAL 0.8928
9 MAG SGA FUC 0.8580
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4X1Z; Ligand: NDG GAL FUC; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4x1z.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
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