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Receptor
PDB id Resolution Class Description Source Keywords
4XDA 1.75 Å EC: 2.7.1.15 VIBRIO CHOLERAE O395 RIBOKINASE COMPLEXED WITH RIBOSE, ADP A ION. VIBRIO CHOLERAE SEROTYPE O1 (STRAIN AT/ CLASSICAL OGAWA 395 / O395) RIBOKINASE RIBOSE KINASE
Ref.: CRYSTAL STRUCTURE OF APO AND LIGAND BOUND VIBRIO CH RIBOKINASE (VC-RK): ROLE OF MONOVALENT CATION INDUC ACTIVATION AND STRUCTURAL FLEXIBILITY IN SUGAR PHOSPHORYLATION ADV.EXP.MED.BIOL. V. 842 293 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP B:401;
D:402;
C:402;
B:402;
A:402;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
NA C:403;
A:403;
B:403;
D:403;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
22.99 Na [Na+]
RIB A:401;
C:401;
D:401;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
150.13 C5 H10 O5 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4XDA 1.75 Å EC: 2.7.1.15 VIBRIO CHOLERAE O395 RIBOKINASE COMPLEXED WITH RIBOSE, ADP A ION. VIBRIO CHOLERAE SEROTYPE O1 (STRAIN AT/ CLASSICAL OGAWA 395 / O395) RIBOKINASE RIBOSE KINASE
Ref.: CRYSTAL STRUCTURE OF APO AND LIGAND BOUND VIBRIO CH RIBOKINASE (VC-RK): ROLE OF MONOVALENT CATION INDUC ACTIVATION AND STRUCTURAL FLEXIBILITY IN SUGAR PHOSPHORYLATION ADV.EXP.MED.BIOL. V. 842 293 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4XDA - RIB C5 H10 O5 C([C@@H]1[....
2 4XCK - RIB C5 H10 O5 C([C@@H]1[....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4XDA - RIB C5 H10 O5 C([C@@H]1[....
2 4XCK - RIB C5 H10 O5 C([C@@H]1[....
3 1RKD - RIB C5 H10 O5 C([C@@H]1[....
4 1GQT - RIB C5 H10 O5 C([C@@H]1[....
5 1RKS - RIB C5 H10 O5 C([C@@H]1[....
6 1RK2 - ALF Al F4 F[Al-](F)(....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4XDA - RIB C5 H10 O5 C([C@@H]1[....
2 4XCK - RIB C5 H10 O5 C([C@@H]1[....
3 1RKD - RIB C5 H10 O5 C([C@@H]1[....
4 1GQT - RIB C5 H10 O5 C([C@@H]1[....
5 1RKS - RIB C5 H10 O5 C([C@@H]1[....
6 1RK2 - ALF Al F4 F[Al-](F)(....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 452
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 HEJ 0.9 1
3 ATP 0.9 1
4 A2D 0.895522 0.971831
5 5FA 0.887324 1
6 AQP 0.887324 1
7 AP5 0.884058 0.971831
8 B4P 0.884058 0.971831
9 BA3 0.869565 0.971831
10 AN2 0.84507 0.985915
11 AT4 0.84507 0.958904
12 M33 0.833333 0.958333
13 ACQ 0.826667 0.972222
14 A 0.823529 0.971429
15 AMP 0.823529 0.971429
16 ACP 0.821918 0.972222
17 6YZ 0.818182 0.972222
18 APR 0.810811 0.971831
19 AR6 0.810811 0.971831
20 ANP 0.802632 0.972222
21 SAP 0.8 0.945946
22 AGS 0.8 0.945946
23 AD9 0.8 0.972222
24 ADX 0.783784 0.873418
25 CA0 0.783784 0.945205
26 TAT 0.779221 0.958904
27 T99 0.779221 0.958904
28 50T 0.773333 0.958333
29 ABM 0.763889 0.917808
30 APC 0.763158 0.958904
31 PRX 0.763158 0.893333
32 ATF 0.759494 0.958904
33 A22 0.753086 0.985915
34 AP2 0.743243 0.958904
35 A12 0.743243 0.958904
36 SRA 0.736111 0.918919
37 ADQ 0.73494 0.945205
38 25L 0.732558 0.985915
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 A3R 0.714286 0.907895
44 ATR 0.708861 0.971429
45 ADP PO3 0.708861 0.943662
46 PAP 0.708861 0.985714
47 SRP 0.707317 0.906667
48 7D3 0.706667 0.905405
49 25A 0.702381 0.971831
50 9X8 0.697674 0.92
51 OAD 0.697674 0.945205
52 RBY 0.6875 0.932432
53 ADV 0.6875 0.932432
54 00A 0.686047 0.883117
55 OOB 0.682353 0.931507
56 5SV 0.682353 0.848101
57 8QN 0.682353 0.931507
58 3OD 0.681818 0.945205
59 BIS 0.681818 0.933333
60 ALF ADP 0.674699 0.87013
61 ADP ALF 0.674699 0.87013
62 AMO 0.674419 0.932432
63 4AD 0.674419 0.92
64 PAJ 0.674419 0.884615
65 GAP 0.670732 0.893333
66 MAP 0.670588 0.945946
67 AHX 0.666667 0.896104
68 VO4 ADP 0.666667 0.931507
69 DLL 0.666667 0.931507
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LMS 0.653333 0.82716
75 LAD 0.651685 0.860759
76 WAQ 0.651685 0.883117
77 B5V 0.651685 0.906667
78 PR8 0.651685 0.85
79 ITT 0.65 0.943662
80 7D4 0.65 0.905405
81 G5P 0.648936 0.921053
82 XYA 0.647059 0.84507
83 ADN 0.647059 0.84507
84 RAB 0.647059 0.84507
85 1ZZ 0.644444 0.839506
86 ME8 0.644444 0.839506
87 FYA 0.644444 0.905405
88 NB8 0.644444 0.896104
89 TXA 0.644444 0.932432
90 6AD 0.642857 0.909091
91 ADP BMA 0.640449 0.918919
92 G3A 0.638298 0.921053
93 DAL AMP 0.632184 0.905405
94 AFH 0.631579 0.884615
95 9SN 0.630435 0.871795
96 9ZA 0.625 0.907895
97 DQV 0.625 0.958333
98 9ZD 0.625 0.907895
99 GTA 0.625 0.886076
100 YAP 0.623656 0.894737
101 B5M 0.623656 0.894737
102 FA5 0.623656 0.906667
103 B5Y 0.623656 0.894737
104 UP5 0.622449 0.92
105 HFD 0.619048 0.945946
106 XAH 0.617021 0.839506
107 AV2 0.616279 0.917808
108 AOC 0.615385 0.821918
109 48N 0.612245 0.896104
110 4UV 0.610526 0.894737
111 6V0 0.606061 0.896104
112 NAI 0.606061 0.907895
113 DND 0.606061 0.932432
114 NAX 0.606061 0.873418
115 NXX 0.606061 0.932432
116 TXD 0.606061 0.907895
117 5N5 0.605634 0.819444
118 5AS 0.604938 0.77907
119 A4P 0.60396 0.843373
120 DAT 0.60241 0.905405
121 A2R 0.602273 0.985915
122 TXE 0.6 0.907895
123 OMR 0.6 0.851852
124 4UU 0.597938 0.894737
125 GA7 0.597938 0.906667
126 A A 0.597826 0.944444
127 A4D 0.597222 0.819444
128 5CD 0.597222 0.805556
129 AP0 0.594059 0.896104
130 4TC 0.594059 0.896104
131 A3P 0.592593 0.971429
132 T5A 0.592233 0.841463
133 139 0.592233 0.873418
134 7D5 0.592105 0.878378
135 ATP A A A 0.589474 0.930556
136 LAQ 0.585859 0.839506
137 MYR AMP 0.585106 0.817073
138 F2R 0.580952 0.864198
139 YLP 0.58 0.819277
140 UPA 0.578431 0.907895
141 7DD 0.578313 0.985714
142 3AM 0.576923 0.929577
143 ADJ 0.576923 0.851852
144 COD 0.575472 0.811765
145 NAD 0.575472 0.931507
146 3AT 0.574713 0.971831
147 JB6 0.574468 0.883117
148 4UW 0.574257 0.860759
149 EP4 0.573333 0.753247
150 A2P 0.573171 0.957143
151 CNA 0.571429 0.932432
152 TYM 0.568627 0.906667
153 PPS 0.568182 0.873418
154 DTA 0.565789 0.786667
155 M2T 0.565789 0.734177
156 AR6 AR6 0.565657 0.917808
157 A3D 0.564815 0.918919
158 80F 0.564815 0.841463
159 3DH 0.564103 0.773333
160 G5A 0.563218 0.77907
161 YLB 0.563107 0.819277
162 YLC 0.563107 0.839506
163 AMP DBH 0.561224 0.893333
164 TYR AMP 0.561224 0.87013
165 MTA 0.558442 0.773333
166 DTP 0.556818 0.905405
167 AHZ 0.554455 0.817073
168 NA7 0.553191 0.958904
169 IOT 0.552381 0.831325
170 ZAS 0.55 0.766234
171 7MD 0.55 0.8625
172 ARG AMP 0.55 0.829268
173 IMO 0.548781 0.929577
174 YLA 0.54717 0.819277
175 NAE 0.544643 0.894737
176 TAD 0.544554 0.884615
177 A5A 0.544444 0.807229
178 2AM 0.544304 0.943662
179 TSB 0.543478 0.819277
180 6RE 0.54321 0.759494
181 AYB 0.542056 0.809524
182 NAQ 0.539823 0.871795
183 V3L 0.539326 0.971831
184 SSA 0.538462 0.8
185 AF3 ADP 3PG 0.538462 0.8375
186 ZID 0.535088 0.918919
187 LPA AMP 0.533981 0.817073
188 52H 0.532609 0.77907
189 VMS 0.532609 0.788235
190 54H 0.532609 0.788235
191 BTX 0.53211 0.841463
192 A3N 0.53012 0.786667
193 J7C 0.53012 0.769231
194 5X8 0.528736 0.763158
195 BT5 0.527273 0.831325
196 8X1 0.526882 0.752809
197 5CA 0.526882 0.8
198 53H 0.526882 0.77907
199 ARU 0.526316 0.860759
200 EAD 0.525862 0.873418
201 RGT 0.525253 0.958904
202 OVE 0.52439 0.905405
203 S4M 0.52381 0.666667
204 7DT 0.522727 0.985714
205 GDP 0.522222 0.92
206 DDS 0.522222 0.878378
207 AVV 0.521277 0.896104
208 NDE 0.521008 0.932432
209 7MC 0.518868 0.841463
210 DSH 0.518072 0.725
211 MAO 0.517647 0.759036
212 NSS 0.515789 0.8
213 DSZ 0.515789 0.8
214 LSS 0.515789 0.761364
215 P5A 0.515464 0.744444
216 DZD 0.513514 0.884615
217 NVA LMS 0.510417 0.752809
218 9K8 0.510204 0.714286
219 12D 0.509615 0.785714
220 M24 0.508772 0.85
221 YLY 0.508772 0.809524
222 P1H 0.508333 0.851852
223 5AD 0.506849 0.746479
224 GJV 0.505882 0.75
225 LEU LMS 0.505155 0.752809
226 AMP NAD 0.504505 0.905405
227 4TA 0.504505 0.807229
228 G A A A 0.504505 0.871795
229 NAJ PZO 0.504425 0.848101
230 GSU 0.5 0.77907
231 128 0.5 0.776471
232 KAA 0.5 0.752809
233 71V 0.5 0.907895
234 A3G 0.5 0.8
235 NDC 0.5 0.871795
236 7D7 0.5 0.743243
237 N0B 0.495726 0.819277
238 NJP 0.495495 0.945946
239 ODP 0.495495 0.909091
240 2SA 0.494624 0.932432
241 6C6 0.494505 0.881579
242 SFG 0.494382 0.75
243 0WD 0.491071 0.921053
244 YSA 0.490196 0.77907
245 PO4 PO4 A A A A PO4 0.489796 0.902778
246 SAM 0.48913 0.690476
247 6IA 0.48913 0.8375
248 A7D 0.488636 0.776316
249 6FA 0.488 0.841463
250 FB0 0.487805 0.804598
251 NAJ PYZ 0.487179 0.807229
252 A5D 0.483516 0.786667
253 IDP 0.483516 0.918919
254 SA8 0.483516 0.707317
255 PGS 0.483146 0.883117
256 MHZ 0.483146 0.697674
257 DA 0.482353 0.878378
258 D5M 0.482353 0.878378
259 NEC 0.482353 0.746667
260 NIA 0.481928 0.822785
261 Y3J 0.480519 0.726027
262 8PZ 0.480392 0.8
263 FAD 0.480315 0.851852
264 FAS 0.480315 0.851852
265 FDA 0.48 0.833333
266 N6P 0.479592 0.915493
267 GGZ 0.479167 0.825
268 U A 0.478261 0.907895
269 SAH 0.478261 0.74359
270 SAI 0.478261 0.734177
271 A G 0.477876 0.883117
272 NPW 0.477477 0.886076
273 NDP 0.477477 0.921053
274 AAM 0.476744 0.971429
275 C2R 0.47561 0.90411
276 AMZ 0.47561 0.916667
277 A A A 0.474747 0.905405
278 GTP 0.473684 0.92
279 U A G G 0.473684 0.883117
280 SMM 0.473684 0.686047
281 NZQ 0.473214 0.909091
282 TXP 0.473214 0.921053
283 A3S 0.47191 0.810811
284 SFD 0.46875 0.734043
285 AIR 0.468354 0.901408
286 AAT 0.468085 0.707317
287 EEM 0.468085 0.690476
288 J7V 0.466667 0.833333
289 Z5A 0.466667 0.77907
290 7C5 0.466667 0.818182
291 62F 0.465649 0.8625
292 HDV 0.463158 0.893333
293 FAY 0.462121 0.8625
294 A3T 0.461538 0.821918
295 ETB 0.461538 0.833333
296 DCA 0.461538 0.823529
297 A6D 0.46 0.722892
298 A U 0.459459 0.87013
299 GEK 0.459184 0.7375
300 6K6 0.459184 0.930556
301 RFL 0.458647 0.821429
302 NAP 0.458333 0.945205
303 S7M 0.458333 0.690476
304 4YB 0.457944 0.761364
305 WSA 0.454545 0.788235
306 TAP 0.454545 0.907895
307 FNK 0.454545 0.804598
308 COA 0.453782 0.823529
309 0T1 0.453782 0.823529
310 101 0.453488 0.878378
311 XNP 0.452174 0.873418
312 NA0 0.45082 0.932432
313 7RP 0.448276 0.928571
314 GP3 0.446809 0.921053
315 TM1 0.446602 0.77381
316 APU 0.446429 0.894737
317 PUA 0.445378 0.884615
318 V1N 0.443396 0.917808
319 7RA 0.443182 0.957747
320 COS 0.442623 0.804598
321 AMX 0.442623 0.833333
322 30N 0.442623 0.752688
323 CAO 0.442623 0.795455
324 QQY 0.44186 0.815789
325 ACK 0.44186 0.861111
326 649 0.441441 0.744444
327 0UM 0.44 0.698795
328 NHD 0.439655 0.905405
329 CMX 0.439024 0.823529
330 SCO 0.439024 0.823529
331 GCP 0.438776 0.896104
332 8BR 0.438202 0.906667
333 GNH 0.4375 0.907895
334 8Q2 0.4375 0.772727
335 3AD 0.4375 0.805556
336 NVA 2AD 0.43617 0.759494
337 62X 0.435644 0.666667
338 FCX 0.435484 0.795455
339 ACO 0.435484 0.795455
340 FAM 0.435484 0.804598
341 9JJ 0.434783 0.8625
342 GNP 0.434343 0.896104
343 9GM 0.434343 0.896104
344 NMX 0.433071 0.76087
345 MGP 0.43299 0.884615
346 26A 0.432099 0.763158
347 HAX 0.432 0.804598
348 K15 0.431373 0.682353
349 DG1 0.430894 0.921053
350 1DG 0.430894 0.921053
351 QQX 0.430233 0.805195
352 2VA 0.430108 0.8
353 S8M 0.43 0.759494
354 2MC 0.429688 0.769231
355 6G0 0.428571 0.884615
356 P5F 0.428571 0.823529
357 FYN 0.428571 0.823529
358 3KK 0.428571 0.804598
359 A C A C 0.428571 0.848101
360 7L1 0.427419 0.795455
361 FAI 0.426966 0.916667
362 RMB 0.426966 0.873239
363 AS 0.426966 0.833333
364 1RB 0.425287 0.885714
365 CA6 0.425197 0.729167
366 SOP 0.425197 0.804598
367 OXK 0.425197 0.804598
368 MCD 0.425197 0.804598
369 COK 0.425197 0.804598
370 G1R 0.424242 0.907895
371 SXZ 0.423077 0.710843
372 CC5 0.423077 0.816901
373 F2N 0.422535 0.813953
374 EO7 0.422222 0.788235
375 ANZ 0.422018 0.8
376 1VU 0.421875 0.795455
377 CMC 0.421875 0.804598
378 CO6 0.421875 0.804598
379 ZDA 0.421053 0.864865
380 GKE 0.420561 0.884615
381 GDC 0.420561 0.884615
382 GDD 0.420561 0.884615
383 NFD 0.420168 0.883117
384 GSP 0.42 0.873418
385 D3Y 0.42 0.789474
386 MC4 0.419847 0.76087
387 3D1 0.419753 0.773333
388 3L1 0.419753 0.773333
389 FA9 0.41958 0.864198
390 5GP 0.419355 0.906667
391 G 0.419355 0.906667
392 KB1 0.419048 0.698795
393 CAJ 0.418605 0.804598
394 SCD 0.418605 0.823529
395 CMP 0.417582 0.901408
396 2BA 0.417582 0.915493
397 SO8 0.416667 0.789474
398 VRT 0.416667 0.769231
399 N01 0.416667 0.905405
400 IVC 0.415385 0.813953
401 1HE 0.415385 0.786517
402 A1S 0.415385 0.804598
403 BCO 0.415385 0.804598
404 3HC 0.415385 0.813953
405 MLC 0.415385 0.804598
406 NMN AMP PO4 0.415254 0.87013
407 2FA 0.414634 0.813333
408 MGO 0.414141 0.860759
409 3NZ 0.413462 0.782051
410 COO 0.412214 0.804598
411 MCA 0.412214 0.795455
412 YE1 0.412214 0.813953
413 CAA 0.412214 0.813953
414 GAV 0.411765 0.884615
415 PRT 0.411215 0.931507
416 JLN 0.411111 0.890411
417 P2P 0.411111 0.902778
418 ZZB 0.410256 0.77381
419 SP1 0.409091 0.842105
420 RP1 0.409091 0.842105
421 2CP 0.409091 0.795455
422 SCA 0.409091 0.804598
423 103 0.409091 0.837838
424 PAX 0.408 0.829268
425 FAD NBT 0.407143 0.75
426 COW 0.406015 0.795455
427 3CP 0.406015 0.804598
428 IRC 0.406015 0.813953
429 BYC 0.406015 0.804598
430 CA8 0.406015 0.729167
431 1GZ 0.406015 0.795455
432 COF 0.406015 0.786517
433 HGG 0.406015 0.804598
434 2KQ 0.406015 0.786517
435 G2P 0.405941 0.884615
436 SLU 0.404959 0.770115
437 U A C C 0.404959 0.858974
438 RBZ 0.404494 0.849315
439 1CZ 0.404412 0.795455
440 FAQ 0.402985 0.804598
441 BCA 0.402985 0.795455
442 4CA 0.402985 0.795455
443 MTP 0.402439 0.730769
444 8OD 0.402062 0.945205
445 CO7 0.401515 0.804598
446 GRA 0.4 0.804598
447 G2R 0.4 0.884615
448 ENQ 0.4 0.916667
449 CNV FAD 0.4 0.8
450 GMV 0.4 0.896104
451 HXC 0.4 0.786517
452 HF7 0.4 0.893333
Ligand no: 2; Ligand: RIB; Similar ligands found: 105
No: Ligand ECFP6 Tc MDL keys Tc
1 AHR 1 1
2 FUB 1 1
3 32O 1 1
4 Z6J 1 1
5 RIB 1 1
6 GAL 0.653846 0.866667
7 GLC 0.653846 0.866667
8 BMA 0.653846 0.866667
9 WOO 0.653846 0.866667
10 GLA 0.653846 0.866667
11 BGC 0.653846 0.866667
12 MAN 0.653846 0.866667
13 GXL 0.653846 0.866667
14 ALL 0.653846 0.866667
15 GIV 0.653846 0.866667
16 FUB AHR 0.486486 0.875
17 AHR AHR 0.486486 0.875
18 G3F 0.483871 0.764706
19 2FG 0.483871 0.764706
20 1GN 0.483871 0.684211
21 GCS 0.483871 0.684211
22 SHG 0.483871 0.764706
23 2H5 0.483871 0.764706
24 PA1 0.483871 0.684211
25 GAF 0.483871 0.764706
26 X6X 0.483871 0.684211
27 95Z 0.483871 0.684211
28 G2F 0.483871 0.764706
29 3MG 0.46875 0.764706
30 SR1 0.466667 0.764706
31 2GS 0.454545 0.764706
32 FUB AHR AHR 0.45 0.875
33 AHR AHR AHR AHR AHR AHR 0.45 0.875
34 RP5 0.441176 0.675
35 HSX 0.441176 0.675
36 ABF 0.441176 0.675
37 GAL BGC 0.439024 0.742857
38 LBT 0.439024 0.742857
39 CBI 0.439024 0.742857
40 BMA GAL 0.439024 0.742857
41 B2G 0.439024 0.742857
42 GLA GLA 0.439024 0.742857
43 GLC GAL 0.439024 0.742857
44 N9S 0.439024 0.742857
45 BGC BMA 0.439024 0.742857
46 BGC GAL 0.439024 0.742857
47 MAL 0.439024 0.742857
48 MAB 0.439024 0.742857
49 GLA GAL 0.439024 0.742857
50 LAT 0.439024 0.742857
51 CBK 0.439024 0.742857
52 TRE 0.424242 0.742857
53 YIO 0.419355 0.757576
54 GLF 0.40625 0.735294
55 ALX 0.405405 0.619048
56 BNX 0.405405 0.619048
57 LB2 0.404762 0.742857
58 M3M 0.404762 0.742857
59 MAN GLC 0.404762 0.742857
60 NGR 0.404762 0.742857
61 GLA GAL BGC 0.4 0.742857
62 BGC BGC BGC BGC BGC BGC 0.4 0.742857
63 BGC BGC BGC BGC BGC 0.4 0.742857
64 BGC GLC GLC GLC 0.4 0.742857
65 CT3 0.4 0.742857
66 CEY 0.4 0.742857
67 GAL GAL GAL 0.4 0.742857
68 CE6 0.4 0.742857
69 B4G 0.4 0.742857
70 BMA MAN BMA 0.4 0.742857
71 GLC BGC BGC 0.4 0.742857
72 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.4 0.742857
73 MAN BMA BMA BMA BMA BMA 0.4 0.742857
74 GLA GAL GLC 0.4 0.742857
75 MT7 0.4 0.742857
76 GLC GLC BGC 0.4 0.742857
77 GLC GAL GAL 0.4 0.742857
78 CEX 0.4 0.742857
79 GLC GLC GLC GLC GLC 0.4 0.742857
80 DXI 0.4 0.742857
81 GLC BGC GLC 0.4 0.742857
82 CE5 0.4 0.742857
83 BGC BGC BGC BGC 0.4 0.742857
84 BGC GLC GLC GLC GLC GLC GLC 0.4 0.742857
85 CE8 0.4 0.742857
86 BGC GLC GLC GLC GLC 0.4 0.742857
87 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.4 0.742857
88 CTR 0.4 0.742857
89 BMA BMA BMA 0.4 0.742857
90 GLC BGC BGC BGC BGC BGC 0.4 0.742857
91 BMA BMA BMA BMA BMA 0.4 0.742857
92 CTT 0.4 0.742857
93 BMA BMA BMA BMA BMA BMA 0.4 0.742857
94 BGC GLC GLC 0.4 0.742857
95 MAN MAN BMA BMA BMA BMA 0.4 0.742857
96 GLC BGC BGC BGC BGC 0.4 0.742857
97 ASO 0.4 0.757576
98 BGC BGC GLC 0.4 0.742857
99 BGC BGC BGC 0.4 0.742857
100 MAN BMA BMA 0.4 0.742857
101 MLR 0.4 0.742857
102 BGC BGC BGC GLC 0.4 0.742857
103 MAN BMA BMA BMA BMA 0.4 0.742857
104 GLC BGC BGC BGC 0.4 0.742857
105 MTT 0.4 0.742857
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found with APoc: 169
This union binding pocket(no: 1) in the query (biounit: 4xda.bio2) has 33 residues
No: Leader PDB Ligand Sequence Similarity
1 4V1F BQ1 None
2 3KO0 TFP None
3 1T5C ADP None
4 3KPE TM3 None
5 1UO5 PIH None
6 4LIK CIT 0.970874
7 3I7S PYR 1.36986
8 5F7J ADE 1.61812
9 3RF4 FUN 1.72414
10 2B7N NTM 1.8315
11 1GPM AMP 1.94175
12 2PHX MAN MAN MAN MAN 1.94175
13 3CV2 OXL 1.94175
14 1Q8V MAN MAN MAN 1.94175
15 2CUN 3PG 1.94175
16 2PHR MAN MAN BMA MAN 1.94175
17 2PHF MAN MAN BMA MAN 1.94175
18 5Y2W PGA 2.13675
19 1NX4 AKG 2.1978
20 1Q7E MET 2.26537
21 2BO4 FLC 2.26537
22 2DVZ GLU 2.54777
23 4GYS MLI 2.589
24 2VVG ADP 2.589
25 2NCD ADP 2.589
26 2XT3 ADP 2.589
27 6A20 ADP 2.589
28 5HCN GCP 2.68199
29 4MGA 27L 2.7451
30 2F5X ASP 2.88462
31 2Y65 ADP 2.91262
32 5ZXD ATP 2.91262
33 3B6C SDN 2.99145
34 4GN8 ASO 3.01003
35 3SHR CMP 3.01003
36 5L3S G 3.02013
37 3AI3 SOL 3.04183
38 4FBL SPD 3.20285
39 4URF 1PS 3.22581
40 2J5V PCA 3.23625
41 6B9T 2HE 3.23625
42 4M26 AKG 3.23625
43 3RS8 APR 3.23625
44 4XJ6 GH3 3.23625
45 4L9Z OXL 3.23625
46 1GQY ACP 3.23625
47 2CFM AMP 3.23625
48 5V1B 8UY 3.33333
49 3AB4 THR 3.37079
50 1NF8 BOG 3.38164
51 4CM9 YGL 3.47222
52 3QDV NDG 3.4965
53 4FRZ ADP 3.55987
54 1NVM OXL 3.55987
55 1UJ5 5RP 3.55987
56 3COB ADP 3.55987
57 4D1J DGJ 3.55987
58 1Y9Q MED 3.64583
59 3UDG TMP 3.65448
60 4JGT PYR 3.67893
61 3H4S ADP 3.7037
62 2P7Q GG6 3.7594
63 3KIF GDL 3.77358
64 3CEV ARG 3.8835
65 1O5Q PYR 3.93443
66 2DT9 THR 4.19162
67 3CF6 SP1 4.19162
68 1UA4 GLC 4.20712
69 1UA4 BGC 4.20712
70 1UA4 AMP 4.20712
71 1GOJ ADP 4.20712
72 6EXF LYS 4.20712
73 5ULJ 0WD 4.20712
74 1I82 BGC BGC 4.2328
75 4MA6 28E 4.4586
76 4YJK URA 4.53074
77 3Q2I HP7 4.53074
78 2YAJ 4HP 4.65116
79 2I74 MAN MAN MAN MAN 4.7619
80 1Q19 SSC 4.85437
81 5FJJ MAN 4.85437
82 1X8D RNS 4.85437
83 5BU2 ADP 4.85437
84 4GO7 THR 5
85 2DTJ THR 5.05618
86 5NM7 GLY 5.17799
87 3KP6 SAL 5.29801
88 5FYR INS 5.36913
89 2D5X L35 5.47945
90 1XPJ TLA 5.55556
91 3ZX4 2M8 5.79151
92 5TPV TYD 5.88235
93 2WTN FER 5.9761
94 1C3Q TZE 5.98592
95 4WBD CIT 6.14887
96 3GM5 CIT 6.28931
97 1OT6 HC4 6.4
98 5O0J GLC 6.47249
99 5O0J 8BR 6.47249
100 4XZ3 ACP 6.47249
101 4B1M FRU FRU 6.48649
102 2HW1 FRU 6.71141
103 2HW1 ANP 6.71141
104 1HBK COA 6.74157
105 3BPX SAL 6.75676
106 3NC9 TR3 6.79612
107 2R5V HHH 6.79612
108 5HWV MBN 6.92308
109 4DZ1 DAL 6.94981
110 1IZC PYR 7.11974
111 3T7V MD0 7.11974
112 1ONI BEZ 7.24638
113 5F1H 5U6 7.31707
114 1P0Z FLC 7.63359
115 3IT7 TLA 7.69231
116 3DRW AMP 7.76699
117 4QDI ATP 7.76699
118 6DZN AE3 7.98122
119 5UKV PG0 8.10811
120 4RW3 TDA 8.27815
121 4RW3 IPD 8.27815
122 5UMW RBF 8.60927
123 1JXN MFU 8.67769
124 1UQX MMA 8.84956
125 5OD2 GLC 8.95197
126 5OD2 5ID 8.95197
127 1WS4 GYP 9.02256
128 5O5Y GLC 9.06149
129 2GGX NPJ 9.375
130 4O4Z N2O 9.74026
131 4EN4 GT0 10.0324
132 4L80 OXL 10.0324
133 4EN4 ATP 10.0324
134 4EN4 GT1 10.0324
135 4D52 GXL 10.356
136 3SCH TB6 10.6061
137 5LWY OLB 11.7647
138 5C8W PCG 11.8881
139 3LN9 FLC 12.2302
140 1IG0 VIB 12.5392
141 1O4T OXL 12.782
142 2JG1 ANP 13.5922
143 2JGV ADP 13.5922
144 2JG1 TA6 13.5922
145 4U36 TNR 13.75
146 6C0B MLI 14.8867
147 4C5N ACP 16.3043
148 4C5N PXL 16.3043
149 3CQD ATP 16.8285
150 5YSQ INS 17.1521
151 2J5B TYE 17.7994
152 4XF6 LIP 20.5128
153 4XF6 INS 20.5128
154 4XF6 ADP 20.5128
155 3ZS7 ATP 23.6667
156 2ABS ACP 26.893
157 3B1Q NOS 31.3916
158 2I6A 5I5 32.0388
159 3LOO B4P 32.6861
160 3OTX AP5 37.5405
161 4PVV HO4 39.1586
162 1V1A ADP 39.8058
163 1V1A KDG 39.8058
164 2C49 ANP 41.0596
165 2C49 ADN 41.0596
166 2VAR AMP 43.3657
167 2VAR ANP 43.3657
168 2VAR KDG 43.3657
169 2VAR KDF 43.3657
Pocket No.: 2; Query (leader) PDB : 4XDA; Ligand: RIB; Similar sites found with APoc: 125
This union binding pocket(no: 2) in the query (biounit: 4xda.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 2VHA GLU None
2 5FB3 NDP 1.2945
3 1K4M NAD 1.40845
4 5DK4 5BX 1.61812
5 1EQ2 NAP 1.61812
6 6F6J CUW 1.94175
7 1DL5 SAH 1.94175
8 6F6J SIN 1.94175
9 3QJ4 FAD 1.94175
10 3FRK TQP 1.94175
11 2PEL LBT 2.11864
12 2PEL LAT 2.11864
13 1MXG ACR 2.26537
14 3ZRR PXG 2.26537
15 3GE7 AFQ 2.26537
16 1AJ8 COA 2.26537
17 3VEH 0GA 2.26537
18 2B1Q TRE 2.45902
19 1K27 MTM 2.4735
20 1E7S NAP 2.589
21 4UTG ANP 2.589
22 3FQ8 PMP 2.589
23 1MHW BP4 CYS DAR TYR PEA 2.85714
24 4BA5 PXG 2.91262
25 2VQ5 HBA 2.98507
26 3GZ8 APR 3.08642
27 2BEK ATP 3.11284
28 4GKV NAD 3.23625
29 3ZNR NU9 3.23625
30 3CTY FAD 3.55987
31 3A72 AHR AHR 3.55987
32 6FYZ EBE 3.55987
33 3OIX FMN 3.55987
34 1DFO PLG 3.55987
35 3STD MQ0 3.63636
36 4U8P UDP 3.8835
37 4U8P FDA 3.8835
38 5A1T NAI 3.8835
39 5A1T OXM 3.8835
40 1P9B IMO 3.8835
41 5W19 9TD 3.8835
42 5OVV ACE ILE GLU SER THR GLU ILE 3.8835
43 1PS9 FMN 3.8835
44 1UA4 GLC 4.20712
45 1UA4 BGC 4.20712
46 3UOY NAP 4.20712
47 3UOY FAD 4.20712
48 1FEC FAD 4.20712
49 1S16 ANP 4.53074
50 4WZ8 3W7 4.53074
51 2IMP NAI 4.53074
52 4ZM4 PLP 4.53074
53 1ZDT PEF 4.56432
54 2FR6 CTN 4.79452
55 6C4A PYR 4.85437
56 3ZL8 ADP 4.85437
57 6DEF GCP 4.85437
58 1Q19 APC 4.85437
59 1VMK GUN 5.05415
60 1OD3 BGC BGC 5.17799
61 3H8C NSZ 5.45455
62 2RCU BUJ 5.50162
63 5JFL NAD 5.82524
64 1XVB BHL 5.88235
65 5HZ9 5M8 5.92593
66 1PVN MZP 6.14887
67 1ZXM ANP 6.14887
68 2HK9 ATR 6.18182
69 2HK9 NAP 6.18182
70 2BKX F6R 6.19835
71 5O0J GLC 6.47249
72 4XZ3 ACP 6.47249
73 6C6O ENG 6.47249
74 4P5E N6P 6.57895
75 2HW1 FRU 6.71141
76 3NC9 TR3 6.79612
77 4DZ1 DAL 6.94981
78 2IV3 UDP 7.11974
79 5JCA NDP 7.39437
80 2W9S NDP 7.45342
81 2TPL HPP 7.76699
82 5WKC FAD 8.09062
83 2Q4W FAD 8.09062
84 1T9D FAD 8.09062
85 4QDF 30Q 8.09062
86 4QDC ASD 8.09062
87 5M1Z 6LW AHR 8.73786
88 5D2H AKG 8.83392
89 5OD2 GLC 8.95197
90 4KQP GLN 9.05172
91 5O5Y GLC 9.06149
92 5NUE NAD 9.38511
93 5NUF NAD 9.38511
94 5Y72 DST 9.70874
95 3IX9 NDP 10
96 6GPC ARG 10.3175
97 2HVW DCP 10.3261
98 4RDH AMP 10.7639
99 4RDI ATP 10.7639
100 3KYG 5GP 5GP 11.0132
101 5LU5 M7P 11.1675
102 1G8K MGD 11.2782
103 4G6I RS3 11.4286
104 4D79 ATP 11.5942
105 1Z4O GL1 12.6697
106 2JG1 TA6 13.5922
107 4ZV1 ARG 16.309
108 3CQD ATP 16.8285
109 5YSQ INS 17.1521
110 5Z84 PEK 17.3469
111 5ZCO PEK 17.3469
112 2BJK NAD 20.0647
113 4XF6 ADP 20.5128
114 4XF6 INS 20.5128
115 4XF6 LIP 20.5128
116 2ABS ACP 26.893
117 3B1Q NOS 31.3916
118 2I6A 5I5 32.0388
119 3LOO B4P 32.6861
120 3OTX AP5 37.5405
121 4PVV HO4 39.1586
122 1V1A KDG 39.8058
123 2C49 ADN 41.0596
124 2VAR KDG 43.3657
125 2VAR KDF 43.3657
Pocket No.: 3; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found with APoc: 109
This union binding pocket(no: 3) in the query (biounit: 4xda.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 4Q5M ROC None
2 3ZJX BOG 1.38408
3 3FSM 2NC 1.47783
4 3KA2 2NC 1.47783
5 3AAQ ARU 1.61812
6 1HG4 LPP 1.79211
7 2YFB SIN 1.93798
8 1BZL GCG 1.94175
9 3HB5 NAP 1.94175
10 3HB5 E2B 1.94175
11 2OS2 OGA 1.94175
12 2Q8E OGA 1.94175
13 2GND MAN MMA 1.94175
14 2P5B OGA 1.94175
15 3CV2 COA 1.94175
16 1G51 AMP 1.94175
17 3FRK TQP 1.94175
18 1Q8P MAN MMA 1.94175
19 2YVJ FAD 1.94175
20 2PHF MAN MAN 1.94175
21 4DQ2 BTX 1.94175
22 2PHR MAN MAN 1.94175
23 2PHW MAN MAN 1.94175
24 1A8R GTP 2.26244
25 2RGJ FAD 2.26537
26 3OPT AKG 2.26537
27 1F76 FMN 2.26537
28 1WUR 8DG 2.27273
29 1XZ3 ICF 2.29885
30 3D9F N6C 2.589
31 3D9F FAD 2.589
32 3C3N FMN 2.589
33 6CUZ FEV 2.589
34 2C0U FAD NBT 2.589
35 4COV GLA GAL 2.62172
36 4ASJ N6A 2.73038
37 6F5W KG1 2.91262
38 5N5U 7N8 2.91262
39 3RG9 NDP 2.91667
40 3FXU TSU 2.95082
41 5XJ7 87O 2.98507
42 5XJ8 NKO 2.98507
43 5T2Z 017 3.0303
44 2P3C 3TL 3.0303
45 4WUP 3UF 3.07692
46 3ZLR X0B 3.16456
47 5U3F 7TS 3.23625
48 4CQE CQE 3.23625
49 3RZ3 U94 3.27869
50 2J1P GRG 3.41297
51 3BP1 GUN 3.44828
52 1U7T TDT 3.44828
53 2ZRU FMN 3.53261
54 2OG7 AHB 3.55987
55 5TWB FAD 3.55987
56 3MJY IJZ 3.55987
57 3MJY FMN 3.55987
58 5N6C NAD 3.66667
59 3CHT 4NB 3.8835
60 5TUK FAD 3.8835
61 3PFD FDA 3.8835
62 2F1K NAP 3.94265
63 4F4S EFO 3.94737
64 5LOF 70R 4.20712
65 5OSW DIU 4.20712
66 5W7D MYR 4.20712
67 5W7D PX8 4.20712
68 4UP4 GAL NAG 4.53074
69 2IID PHE 4.53074
70 2IID FAD 4.53074
71 3SM2 478 4.54545
72 1T0S BML 4.65116
73 3TAY MN0 4.90798
74 1QH9 LAC 5.17241
75 4QO5 NAG 5.17799
76 1E6W NAD 5.38462
77 4MIG G3F 5.50162
78 5VIT MLI 5.6338
79 2WLG SOP 6.04651
80 4HZO COA 6.14887
81 4ZBR DIF 6.14887
82 4ZBR NPS 6.14887
83 2NYA MGD 6.47249
84 2Q0L FAD 6.47249
85 3DLG GWE 6.47249
86 5LX9 OLB 6.47249
87 2OO0 PLP 6.47249
88 1FL2 FAD 6.47249
89 3RV5 DXC 6.74157
90 1OFD FMN 6.79612
91 5TS5 FAD 7.44337
92 3RNM FAD 7.44337
93 5IF4 6AK 7.54717
94 1GET NAP 8.09062
95 4UCC ZKW 8.15451
96 2WDQ TEO 8.69565
97 3T6E UQ9 9.68992
98 4IA6 EIC 9.70874
99 5FUI APY 10.6061
100 1UUO ORO 10.6796
101 1UUO FMN 10.6796
102 1UUO BRF 10.6796
103 1KNM LAT 14.6154
104 2C6Q NDP 15.534
105 4IGH 1EA 19.4175
106 4IGH FMN 19.4175
107 4IGH ORO 19.4175
108 1MID LAP 20.8791
109 3RMK BML 27.7108
Pocket No.: 4; Query (leader) PDB : 4XDA; Ligand: RIB; Similar sites found with APoc: 144
This union binding pocket(no: 4) in the query (biounit: 4xda.bio2) has 33 residues
No: Leader PDB Ligand Sequence Similarity
1 4V1F BQ1 None
2 3KO0 TFP None
3 1T5C ADP None
4 3KPE TM3 None
5 1UO5 PIH None
6 4LIK CIT 0.970874
7 3I7S PYR 1.36986
8 5F7J ADE 1.61812
9 3RF4 FUN 1.72414
10 2B7N NTM 1.8315
11 1GPM AMP 1.94175
12 2PHX MAN MAN MAN MAN 1.94175
13 3CV2 OXL 1.94175
14 1Q8V MAN MAN MAN 1.94175
15 2CUN 3PG 1.94175
16 2PHR MAN MAN BMA MAN 1.94175
17 2PHF MAN MAN BMA MAN 1.94175
18 5Y2W PGA 2.13675
19 1NX4 AKG 2.1978
20 1Q7E MET 2.26537
21 2BO4 FLC 2.26537
22 2DVZ GLU 2.54777
23 4GYS MLI 2.589
24 2VVG ADP 2.589
25 2NCD ADP 2.589
26 2XT3 ADP 2.589
27 6A20 ADP 2.589
28 5HCN GCP 2.68199
29 4MGA 27L 2.7451
30 2F5X ASP 2.88462
31 2Y65 ADP 2.91262
32 5ZXD ATP 2.91262
33 3B6C SDN 2.99145
34 4GN8 ASO 3.01003
35 3SHR CMP 3.01003
36 5L3S G 3.02013
37 3AI3 SOL 3.04183
38 4FBL SPD 3.20285
39 4URF 1PS 3.22581
40 2J5V PCA 3.23625
41 6B9T 2HE 3.23625
42 4M26 AKG 3.23625
43 3RS8 APR 3.23625
44 4XJ6 GH3 3.23625
45 4L9Z OXL 3.23625
46 1GQY ACP 3.23625
47 2CFM AMP 3.23625
48 5V1B 8UY 3.33333
49 3AB4 THR 3.37079
50 1NF8 BOG 3.38164
51 4CM9 YGL 3.47222
52 3QDV NDG 3.4965
53 4FRZ ADP 3.55987
54 1NVM OXL 3.55987
55 1UJ5 5RP 3.55987
56 3COB ADP 3.55987
57 4D1J DGJ 3.55987
58 1Y9Q MED 3.64583
59 3UDG TMP 3.65448
60 4JGT PYR 3.67893
61 3H4S ADP 3.7037
62 2P7Q GG6 3.7594
63 3KIF GDL 3.77358
64 3CEV ARG 3.8835
65 1O5Q PYR 3.93443
66 2DT9 THR 4.19162
67 3CF6 SP1 4.19162
68 1UA4 AMP 4.20712
69 1GOJ ADP 4.20712
70 6EXF LYS 4.20712
71 5ULJ 0WD 4.20712
72 1I82 BGC BGC 4.2328
73 4MA6 28E 4.4586
74 4YJK URA 4.53074
75 3Q2I HP7 4.53074
76 2YAJ 4HP 4.65116
77 2I74 MAN MAN MAN MAN 4.7619
78 1Q19 SSC 4.85437
79 5FJJ MAN 4.85437
80 1X8D RNS 4.85437
81 5BU2 ADP 4.85437
82 4GO7 THR 5
83 2DTJ THR 5.05618
84 5NM7 GLY 5.17799
85 3KP6 SAL 5.29801
86 5FYR INS 5.36913
87 2D5X L35 5.47945
88 1XPJ TLA 5.55556
89 3ZX4 2M8 5.79151
90 5TPV TYD 5.88235
91 2WTN FER 5.9761
92 1C3Q TZE 5.98592
93 4WBD CIT 6.14887
94 3GM5 CIT 6.28931
95 1OT6 HC4 6.4
96 5O0J 8BR 6.47249
97 4B1M FRU FRU 6.48649
98 2HW1 ANP 6.71141
99 1HBK COA 6.74157
100 3BPX SAL 6.75676
101 2R5V HHH 6.79612
102 5HWV MBN 6.92308
103 1IZC PYR 7.11974
104 3T7V MD0 7.11974
105 1ONI BEZ 7.24638
106 5F1H 5U6 7.31707
107 1P0Z FLC 7.63359
108 3IT7 TLA 7.69231
109 3DRW AMP 7.76699
110 4QDI ATP 7.76699
111 6DZN AE3 7.98122
112 5UKV PG0 8.10811
113 4RW3 TDA 8.27815
114 4RW3 IPD 8.27815
115 5UMW RBF 8.60927
116 1JXN MFU 8.67769
117 1UQX MMA 8.84956
118 5OD2 5ID 8.95197
119 1WS4 GYP 9.02256
120 2GGX NPJ 9.375
121 4O4Z N2O 9.74026
122 4EN4 GT0 10.0324
123 4L80 OXL 10.0324
124 4EN4 GT1 10.0324
125 4EN4 ATP 10.0324
126 4D52 GXL 10.356
127 3SCH TB6 10.6061
128 5LWY OLB 11.7647
129 5C8W PCG 11.8881
130 3LN9 FLC 12.2302
131 1IG0 VIB 12.5392
132 1O4T OXL 12.782
133 2JG1 ANP 13.5922
134 2JGV ADP 13.5922
135 4U36 TNR 13.75
136 6C0B MLI 14.8867
137 4C5N ACP 16.3043
138 4C5N PXL 16.3043
139 2J5B TYE 17.7994
140 3ZS7 ATP 23.6667
141 1V1A ADP 39.8058
142 2C49 ANP 41.0596
143 2VAR AMP 43.3657
144 2VAR ANP 43.3657
Pocket No.: 5; Query (leader) PDB : 4XDA; Ligand: ADP; Similar sites found with APoc: 58
This union binding pocket(no: 5) in the query (biounit: 4xda.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 3NUB UD0 1.2945
2 5NIU 8YZ 1.5625
3 4P6X HCY 1.56863
4 4N02 FNR 1.61812
5 5I60 67W 1.94175
6 3DXW ICC 1.94175
7 4YAG NAI 2.07612
8 1UKW FAD 2.26537
9 3GGO NAI 2.26537
10 5UFS 1TA 2.26537
11 3ZQE DXC 2.29508
12 5TCI MLI 2.589
13 5HSA FAS 2.589
14 1V6A TRE 2.589
15 4CE5 PDG 2.589
16 2W5P CL8 2.68456
17 4DD8 BAT 2.88462
18 1IYE PGU 2.91262
19 3AXB PRO 2.91262
20 3AXB FAD 2.91262
21 2IZ1 ATR 3.23625
22 5W7B MYR 3.23625
23 2NVK FAD 3.23625
24 3HP9 CF1 3.23625
25 1XHC FAD 3.55987
26 3QFA FAD 3.55987
27 5OC1 FAD 3.8835
28 1IDA 0PO 4.0404
29 6GAS FAD 4.20712
30 5XDT MB3 4.22078
31 1S7G NAD 4.34783
32 4J56 FAD 4.53074
33 4NKW PLO 4.85437
34 5BUK FAD 4.85437
35 1RP0 AHZ 4.92958
36 4PGK Y69 5.32787
37 1LLU NAD 5.50162
38 6C6O ENG 6.47249
39 6FA4 D1W 6.47249
40 3LE7 ADE 6.51341
41 4LSJ LSJ 6.58915
42 1JA9 PYQ 6.93431
43 1B4B ARG 7.04225
44 3E3U NVC 7.1066
45 5FCF GLY GLY GLY 7.11974
46 5ECP MET 7.17489
47 5ECP JAA 7.17489
48 1I8T FAD 7.44337
49 2F5Z FAD 7.44337
50 2DXU BT5 8.93617
51 4UUG PXG 9.38511
52 2GBB CIT 9.61539
53 5NII FAD 10.0324
54 5LWY OLA 11.7647
55 1JGS SAL 12.3188
56 3DAA PDD 12.9964
57 5O3Q CMP 15
58 4KXL 6C6 19.0789
Pocket No.: 6; Query (leader) PDB : 4XDA; Ligand: RIB; Similar sites found with APoc: 126
This union binding pocket(no: 6) in the query (biounit: 4xda.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 6GYT GLY LEU GLY ALY GLY GLY ALA ALY ALA None
2 5XXH E0D None
3 2QIE 8CS None
4 3BY8 MLT 1.40845
5 5OES ADP 1.94175
6 6FOG OXL 2.23214
7 3GGO NAI 2.26537
8 3GGO ENO 2.26537
9 2CYB TYR 2.26537
10 4DC2 ADE 2.26537
11 4UXL 5P8 2.589
12 6CUZ FEV 2.589
13 1ZAP A70 2.589
14 2CWH PYC 2.589
15 6AM8 PLT 2.589
16 5Z99 SLB 2.589
17 4J7Q B7N 2.589
18 3C3N FMN 2.589
19 3EKK GS2 2.60586
20 2Y5S 78H 2.72109
21 3R9V DXC 2.7972
22 3RGA LSB 2.82686
23 4FFG 0U8 2.91262
24 2P3C 3TL 3.0303
25 2R0H CTO 3.04878
26 1TLL NAP 3.05233
27 4JGX PLM 3.10078
28 4TW7 37K 3.125
29 5J60 FAD 3.23625
30 3RUV ANP 3.23625
31 2VVL FAD 3.23625
32 2YG2 S1P 3.48837
33 2YG2 FLC 3.48837
34 5ZFJ 9BF 3.52423
35 3MJY IJZ 3.55987
36 3MJY FMN 3.55987
37 2XIQ MLC 3.55987
38 5F2T PLM 3.57143
39 1M5W DXP 3.7037
40 5YJF SAH 3.87324
41 1UNB AKG 3.8835
42 5W8Q BU4 3.8835
43 2CXS F6P 3.8835
44 2NV2 GLN 3.8835
45 5AE9 OKO 3.8835
46 2XMY CDK 4.02685
47 5BVE 4VG 4.20712
48 3U6W KIV 4.20712
49 5A1S FLC 4.20712
50 5M45 AMP 4.20712
51 1KOR SIN 4.20712
52 5ZCT ANP 4.20712
53 4R74 F6P 4.20712
54 2D24 XYS XYS 4.20712
55 5XDT MB3 4.22078
56 1KHZ ADV 4.30622
57 4EWH T77 4.36364
58 1ERB ETR 4.37158
59 1OPK P16 4.53074
60 3IES M24 4.53074
61 2E5V FAD 4.53074
62 4Q0P 0MK 4.61538
63 3DCM SAM 4.6875
64 1U1W 3HA 4.69799
65 5IH9 6BF 4.77612
66 4NZN ANP 4.85437
67 4NZN 2OU 4.85437
68 1V97 MTE 4.85437
69 5WX3 COA 4.85437
70 6A1G 9OL 4.85437
71 3OZ2 OZ2 4.85437
72 3A4X NAG NAG NAG NDG 4.85437
73 1PG4 COA 4.85437
74 1PG4 PRX 4.85437
75 1FIQ FAD 4.85437
76 5LNE A2G GAL 4.87805
77 3NRZ FAD 4.87805
78 4R3U 3KK 5.06329
79 4R3U 3HC 5.06329
80 3LCC SAH 5.10638
81 6F7L FAD 5.17799
82 1JP4 AMP 5.19481
83 5BV6 35G 5.26316
84 1U7Z PMT 5.30973
85 4Z87 GDP 5.50162
86 3KJS DQ1 5.82524
87 1N62 FAD 6.0241
88 1FFU FAD 6.13497
89 1FFU CDP 6.13497
90 1REQ DCA 6.14887
91 1PK8 ATP 6.14887
92 1ZPD DPX 6.14887
93 3LAD FAD 6.47249
94 4NMC FAD 6.47249
95 4NMC 2OP 6.47249
96 5VOM 9GY 6.71141
97 2TPS TPS 7.04846
98 5K8C NAD 7.44337
99 5Y6Q FAD 7.44337
100 3E2M E2M 7.56757
101 1EWF PC1 7.76699
102 6ECG PM9 7.76699
103 4ZOH FAD 7.76699
104 4AUT FAD 7.76699
105 1BXG NAD 7.76699
106 2RHW C0E 7.77385
107 1OLM VTQ 8.09062
108 6BYM HC3 8.37438
109 5MDH NAD 8.73786
110 4MDH NAD 8.73786
111 1T3Q FAD 8.92857
112 5HA0 LTD 8.97436
113 4OMJ 2TX 8.99281
114 6G5Q EMZ 9.06149
115 2CM4 RCL