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Receptor
PDB id Resolution Class Description Source Keywords
4XIZ 2 Å NON-ENZYME: OTHER STRUCTURE OF A PHOSPHOLIPID TRAFFICKING COMPLEX WITH SUBSTRA SACCHAROMYCES CEREVISIAE (STRAIN ATCC S288C) PHOSPHOLIPID LIPID TRANSPORT-OXIDOREDUCTASE COMPLEX
Ref.: STRUCTURAL BASIS OF INTRAMITOCHONDRIAL PHOSPHATIDIC TRANSPORT MEDIATED BY UPS1-MDM35 COMPLEX EMBO REP. V. 16 813 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
LPP A:201;
B:201;
Valid;
Valid;
none;
none;
submit data
648.891 C35 H69 O8 P CCCCC...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4XIZ 2 Å NON-ENZYME: OTHER STRUCTURE OF A PHOSPHOLIPID TRAFFICKING COMPLEX WITH SUBSTRA SACCHAROMYCES CEREVISIAE (STRAIN ATCC S288C) PHOSPHOLIPID LIPID TRANSPORT-OXIDOREDUCTASE COMPLEX
Ref.: STRUCTURAL BASIS OF INTRAMITOCHONDRIAL PHOSPHATIDIC TRANSPORT MEDIATED BY UPS1-MDM35 COMPLEX EMBO REP. V. 16 813 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 4XIZ - LPP C35 H69 O8 P CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 4XIZ - LPP C35 H69 O8 P CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 4XIZ - LPP C35 H69 O8 P CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: LPP; Similar ligands found: 103
No: Ligand ECFP6 Tc MDL keys Tc
1 7PH 1 1
2 F57 1 1
3 LPP 1 1
4 3PH 1 1
5 6PH 1 1
6 7P9 0.980392 1
7 PD7 0.921569 1
8 D21 0.847458 0.976744
9 M7U 0.847458 1
10 44E 0.846154 1
11 PX8 0.803571 0.930233
12 PX2 0.803571 0.930233
13 TGL 0.745098 0.690476
14 CD4 0.725806 0.953488
15 PTY 0.714286 0.788462
16 PEH 0.714286 0.788462
17 PEF 0.714286 0.788462
18 PEV 0.714286 0.788462
19 8PE 0.714286 0.788462
20 PEE 0.703125 0.773585
21 LHG 0.703125 0.911111
22 PGT 0.703125 0.911111
23 9PE 0.703125 0.788462
24 CDL 0.6875 0.863636
25 PLD 0.681818 0.727273
26 HGX 0.681818 0.727273
27 PC7 0.681818 0.727273
28 LIO 0.681818 0.727273
29 P5S 0.681818 0.803922
30 HGP 0.681818 0.727273
31 6PL 0.681818 0.727273
32 PII 0.661765 0.836735
33 PIF 0.642857 0.857143
34 CN3 0.642857 0.953488
35 3PE 0.641791 0.711538
36 DDR 0.631579 0.697674
37 DGA 0.631579 0.697674
38 FAW 0.631579 0.697674
39 L2C 0.631579 0.697674
40 PIZ 0.630137 0.875
41 XP5 0.626866 0.727273
42 L9Q 0.625 0.773585
43 6OU 0.625 0.773585
44 LOP 0.625 0.773585
45 PCF 0.623188 0.685185
46 PC1 0.623188 0.685185
47 MC3 0.623188 0.685185
48 PIO 0.616438 0.857143
49 PGW 0.616438 0.891304
50 52N 0.616438 0.857143
51 IP9 0.616438 0.875
52 D3D 0.616438 0.891304
53 CN6 0.614286 0.953488
54 NKN 0.610169 0.953488
55 NKO 0.610169 0.953488
56 AGA 0.608696 0.869565
57 PGV 0.608108 0.891304
58 DR9 0.608108 0.891304
59 P6L 0.6 0.891304
60 PGK 0.6 0.854167
61 PCW 0.6 0.714286
62 OZ2 0.592105 0.891304
63 P50 0.592105 0.803922
64 44G 0.590909 0.911111
65 ZPE 0.586667 0.773585
66 B7N 0.584416 0.82
67 PCK 0.584416 0.689655
68 DGG 0.576923 0.854167
69 PSF 0.573529 0.803922
70 GP7 0.5625 0.773585
71 LBR 0.5625 0.644444
72 PIE 0.556962 0.764706
73 PEK 0.556962 0.773585
74 P3A 0.556962 0.851064
75 POV 0.551282 0.672727
76 L9R 0.551282 0.672727
77 PSC 0.548781 0.714286
78 NKP 0.529412 0.931818
79 G2A 0.527273 0.659091
80 2JT 0.527273 0.659091
81 T7X 0.517647 0.82
82 PDK 0.505618 0.683333
83 SQD 0.5 0.609375
84 1QW 0.491525 0.644444
85 GYM 0.491525 0.644444
86 DLP 0.482353 0.672727
87 EPH 0.466667 0.773585
88 LAP 0.465753 0.732143
89 LPC 0.465753 0.732143
90 LP3 0.465753 0.732143
91 PGM 0.457143 0.847826
92 87O 0.45614 0.813953
93 PC5 0.432432 0.603448
94 3PC 0.428571 0.666667
95 PVC 0.426471 0.625
96 OLC 0.426471 0.630435
97 OLB 0.426471 0.630435
98 CN5 0.421053 0.931818
99 42H 0.414634 0.719298
100 DB4 0.413333 0.795918
101 PBU 0.410256 0.795918
102 MVC 0.405797 0.630435
103 S12 0.402439 0.769231
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4XIZ; Ligand: LPP; Similar sites found with APoc: 183
This union binding pocket(no: 1) in the query (biounit: 4xiz.bio1) has 33 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL GLC None
2 2BOS GLA GAL None
3 3I7V ATP None
4 3IWD M2T None
5 5HWV MBN None
6 3ZO7 K6H None
7 1LOJ URI None
8 1L5Y BEF None
9 1FMB HYB None
10 1F5F DHT 1.76471
11 4I9A NCN 1.76471
12 4YLZ LAT NAG GAL 1.96078
13 1ULE GLA GAL NAG 2
14 1SDW IYT 2.35294
15 3KDJ A8S 2.35294
16 3JRS A8S 2.35294
17 4NFN 2KC 2.35294
18 1F9V ADP 2.94118
19 3ASZ C5P 2.94118
20 1GQG DCD 2.94118
21 1ZZ7 S0H 3.52941
22 5W1E PHB 3.52941
23 5LDQ NAP 3.52941
24 1IIU RTL 3.52941
25 5F7J ADE 3.52941
26 6GNO XDI 3.7037
27 3ZXE PGZ 3.7594
28 1GUI BGC BGC BGC BGC BGC BGC 3.87097
29 1C9K 5GP 4.11765
30 5OKT 9XK 4.11765
31 5H2U 1N1 4.11765
32 5LY1 PPI 4.28571
33 4QDC ASD 4.28571
34 5XEG AKG 4.28571
35 6FA4 D1W 4.28571
36 1LNM DTX 4.28571
37 2AGC DAO 4.32099
38 2D6M LBT 4.40252
39 4M1U A2G MBG 4.70588
40 3JU6 ANP 4.70588
41 2ET1 GLV 4.70588
42 5G48 1FL 4.70588
43 3G1Z AMP 4.70588
44 5TV6 PML 4.70588
45 2HRL SIA GAL SIA BGC NGA CEQ 4.72441
46 1NKI PPF 5.18518
47 4YBN FAD 5.29412
48 1I7M PUT 5.71429
49 3ZJX BOG 5.71429
50 5NLD LBT 5.71429
51 1MH5 HAL 5.71429
52 2XOM GAL GAL GAL 5.71429
53 5XQW 8EU 5.71429
54 1I7M CG 5.71429
55 3NZ1 3NY 5.71429
56 4H6B 10X 5.88235
57 4H6B 10Y 5.88235
58 5O9W AKG 5.88235
59 4FE2 AIR 5.88235
60 1OI6 TMP 5.88235
61 1XI9 PLP 5.88235
62 4OJ8 AKG 6.47059
63 1NX4 AKG 6.47059
64 6MPT C30 6.47059
65 3SLS 77D 6.47059
66 5CLO NS8 6.77966
67 1MFI FHC 7.01754
68 3CBC DBS 7.05882
69 1Z03 OCH 7.05882
70 3FW4 CAQ 7.05882
71 4KYS VIB 7.05882
72 4MVK ACE VAL PHE PHE ALA GLU ASP NH2 7.05882
73 3L1N PLM 7.05882
74 1QKQ MAN 7.14286
75 5H9P TD2 7.14286
76 1RYD GLC 7.14286
77 5ODY 9SK 7.14286
78 6FOF LAT 7.14286
79 1VJE MSE 7.14286
80 3KLL MAL 7.14286
81 4QYN RTL 7.14286
82 1BHX ASP PHE GLU GLU ILE 7.48299
83 2IRY DGT 7.64706
84 6GKV F2W 8.23529
85 2FUE M1P 8.23529
86 6C5F 7L9 8.54701
87 5TH5 MET 8.57143
88 2B56 U5P 8.57143
89 3UEC ALA ARG TPO LYS 8.57143
90 3G08 FEE 8.57143
91 5FPE 3TR 8.57143
92 1UCD U5P 8.57143
93 4BTV RB3 8.57143
94 1F52 ADP 8.57143
95 4MOB ADP 8.82353
96 2GC0 PAN 8.82353
97 1J3R 6PG 8.82353
98 5KJW 53C 9.41177
99 4PL9 ADP 9.41177
100 5DQ8 FLF 9.41177
101 3GM5 CIT 9.43396
102 1IS3 LAT 9.62963
103 4WVW SLT 9.72222
104 4Y24 TD2 9.74026
105 3JQ3 ADP 10
106 2BS5 BGC GAL FUC 10
107 5H9Y BGC BGC BGC BGC 10
108 5KO1 6UY 10
109 1U1J MET 10
110 3W9R A8S 10
111 6BYM HC3 10
112 3B6R ADP 10
113 1ERB ETR 10.5882
114 2F7A BEZ 11.1765
115 3WG3 A2G GAL NAG FUC 11.1765
116 5OD2 GLC 11.1765
117 2IUW AKG 11.4286
118 1VRP ADP 11.4286
119 3I0O SMI 11.4286
120 2YNE YNE 11.4286
121 2YNE NHW 11.4286
122 2J6U DGT 11.4286
123 5M90 JIF 11.7647
124 5JSP DQY 11.7647
125 5W0N UPU 11.7647
126 1QPR PHT 11.7647
127 3QSB 743 12.3529
128 6CAY ERG 12.426
129 3SAO DBH 12.5
130 3SAO NKN 12.5
131 4H2W AMP 12.6214
132 1GT4 UNA 12.8571
133 3GD9 GLC BGC BGC BGC 12.8571
134 1U6R ADP 12.8571
135 3ANY 2A3 12.9412
136 2PNC CLU 13.5294
137 5YF9 NIO 14.2857
138 4KBA 1QM 14.2857
139 4R78 AMP 14.2857
140 4QCK ASD 14.2857
141 5T8O 76Z 14.2857
142 2GVJ DGB 14.2857
143 2Z3U CRR 14.7059
144 5TVF CGQ 14.7059
145 2XG5 EC5 15.7143
146 2XG5 EC2 15.7143
147 3TTZ 07N 15.7143
148 5LX9 OLB 15.7143
149 3HAV ATP 15.7143
150 2BCG GER 15.7143
151 4P8O 883 15.7143
152 4D4U FUC NDG GAL FUC 15.7143
153 4DBH OXL 15.8824
154 1I06 TZL 17.0588
155 1QY1 PRZ 17.0588
156 1T27 PCW 17.0588
157 3EHG ATP 17.1429
158 4WOE ADP 17.1429
159 4EMV 0R9 17.1429
160 4YRI 4JH 17.1429
161 2GQS C2R 17.1429
162 3HCH RSM 17.1429
163 4NG2 OHN 17.1429
164 1RJW ETF 17.6471
165 5Z84 CHD 17.6871
166 1DZK PRZ 18.5714
167 4RD0 GDP 18.5714
168 5Y4R C2E 18.5714
169 4WVO 3UZ 18.5714
170 2CHN NGT 18.5714
171 4LIT AKG 20
172 2XN3 ID8 20
173 3U6W KIV 20
174 3EHH ADP 21.4286
175 1W8S FBP 21.4286
176 1SJD NPG 21.7647
177 1ELI PYC 22.3529
178 5ISY NAD 24.2857
179 1KQW RTL 24.2857
180 3O0W MAN MAN MAN GLC 24.2857
181 1GPM AMP 25.7143
182 4RF7 ARG 32.8571
183 4QDF 30Q 34.2857
Pocket No.: 2; Query (leader) PDB : 4XIZ; Ligand: LPP; Similar sites found with APoc: 137
This union binding pocket(no: 2) in the query (biounit: 4xiz.bio2) has 33 residues
No: Leader PDB Ligand Sequence Similarity
1 1TW4 CHD None
2 4ZSI 4R1 None
3 5T7I LAT NAG GAL None
4 3K3G MMU None
5 4ZSI GLP None
6 3UXM 0DN None
7 1KDK DHT 1.76471
8 5AZC PGT 2.35294
9 1TV5 N8E 2.48307
10 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 2.94118
11 1DZT TPE 2.94118
12 1DTL BEP 3.10559
13 4DE3 DN8 3.52941
14 2Y2B AH0 3.52941
15 5OLK DTP 3.52941
16 1OFZ FUL 4.11765
17 3W54 RNB 4.11765
18 4ZS4 ATP 4.11765
19 5OCG 9R5 4.28571
20 1R6N 434 4.28571
21 3VKX T3 4.28571
22 5X3R 7Y3 4.28571
23 1OJK GLC BGC 4.28571
24 1OJJ GLC GAL 4.28571
25 5UGW GSH 4.28571
26 1KGI T4A 4.28571
27 4ITH RCM 4.28571
28 4U0W 16G 4.28571
29 2P7Q GG6 4.51128
30 3B9Z CO2 4.70588
31 3IT7 TLA 4.70588
32 3THR C2F 5.29412
33 4OCT AKG 5.29412
34 4IBF 1D5 5.42636
35 4WUJ FMN 5.44218
36 2OVW CBI 5.71429
37 3F8C HT1 5.71429
38 4LOO SB4 5.71429
39 2WPX ACO 5.71429
40 2Z77 HE7 5.7554
41 1GNY XYP XYP XYP XYP XYP 5.88235
42 3E7S AT2 5.88235
43 2RH1 CLR 7.14286
44 4C01 QY9 7.14286
45 1XMY ROL 7.14286
46 5ETJ IM5 7.14286
47 1NF8 BOG 7.14286
48 2HO2 PRO PRO PRO PRO PRO PRO PRO PRO PRO LEU 7.89474
49 4ZGM 32M 8.19672
50 4JLS 3ZE 8.55263
51 3KP6 SAL 8.57143
52 1M2Z BOG 8.57143
53 1ZPD CIT 8.57143
54 4FFG 0U8 8.57143
55 3E70 GDP 8.57143
56 4COL DTP 8.57143
57 1I1E DM2 8.57143
58 5VGS 9A7 8.57143
59 2GOO NDG 9.16031
60 4E1Z 0MX 9.41177
61 3BJC WAN 9.41177
62 5OCA 9QZ 10
63 4OB6 S2T 10
64 1I0B PEL 10
65 4TUZ 36J 10
66 2YKL NLD 10
67 4WGF HX2 10
68 4DXJ 0M9 10
69 2PX6 DH9 10
70 2UW1 GVM 10
71 2BJ4 OHT 10
72 5IM3 DTP 10
73 5DXE EST 10
74 3ET1 ET1 10
75 3SP6 IL2 10
76 4BG4 ADP 10.5882
77 5HCN DAO 10.5882
78 4CJN QNZ 11.1765
79 3OYW TDG 11.194
80 1POC GEL 11.4286
81 1LSH PLD 11.4286
82 6EP7 GSH 11.4286
83 4WQ2 3SU 12.3529
84 4V1F BQ1 12.7907
85 5VNF VAL THR SER VAL VAL 12.8571
86 5GLT BGC GAL NAG GAL 12.8571
87 4MG8 27J 12.8571
88 4MGD 27N 12.8571
89 5WGD EST 12.8571
90 2QZO KN1 12.8571
91 5WGQ EST 12.8571
92 5HYR EST 12.8571
93 3UUD EST 12.8571
94 4MGB XDH 12.8571
95 4MG7 27H 12.8571
96 5DX3 EST 12.8571
97 2YJD YJD 12.9412
98 1U3R 338 12.9412
99 3OLL EST 12.9412
100 2OZ5 7XY 14.1176
101 5W7B MYR 14.2857
102 4OGQ 7PH 14.2857
103 4OGQ SQD 14.2857
104 4LA7 A1O 14.2857
105 2VQ5 LDP 14.2857
106 2WSA MYA 14.7059
107 2WSA 646 14.7059
108 5LWY OLB 15.7143
109 1EJH M7G 15.7143
110 5CHR 4NC 15.7143
111 4D52 GXL 15.7143
112 5V3Y 5V8 15.8824
113 5T8U LPA 15.8824
114 3A16 PXO 17.1429
115 1K0E TRP 17.1429
116 5ZCO PGV 17.6871
117 5ZCO CHD 17.6871
118 5W97 CHD 17.6871
119 2DYS PGV 17.6871
120 5Z84 PGV 17.6871
121 2DYR PGV 17.6871
122 5UR6 8KM 18.5714
123 4UWJ 7L5 18.5714
124 4UWJ MYA 18.5714
125 5N0L ILE 18.8679
126 3TDC 0EU 20
127 5M36 9SZ 20
128 3TW1 AHN 21.4286
129 1HBK MYR 23.5955
130 5L2R MLA 24.2857
131 3O2K DST 24.2857
132 2Q8G AZX 24.2857
133 1XVB 3BR 25.7143
134 1ZY5 ANP 27.1429
135 6CGN DA 28.5714
136 1J78 OLA 28.5714
137 3KPE TM3 38.4615
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