Receptor
PDB id Resolution Class Description Source Keywords
4Y0V 1.8 Å NON-ENZYME: OTHER STRUCTURE OF AN ADP RIBOSYLATION FACTOR FROM ENTAMOEBA HISTO 1:IMSS BOUND TO MG-GDP ENTAMOEBA HISTOLYTICA SIGNALING PROTEIN STRUCTURAL GENOMICS SEATTLE STRUCTURAL GCENTER FOR INFECTIOUS DISEASE SSGCID
Ref.: STRUCTURE OF AN ADP-RIBOSYLATION FACTOR, ARF1, FROM ENTAMOEBA HISTOLYTICA BOUND TO MG(2+)-GDP. ACTA CRYSTALLOGR.,SECT.F V. 71 594 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:201;
B:201;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:202;
B:202;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4YLG 1.8 Å NON-ENZYME: OTHER STRUCTURE OF AN ADP RIBOSYLATION FACTOR FROM ENTAMOEBA HISTO 1:IMSS BOUND TO MG-GDP ENTAMOEBA HISTOLYTICA HM-1:IMSS SIGNALING PROTEIN STRUCTURAL GENOMICS SEATTLE STRUCTURAL GCENTER FOR INFECTIOUS DISEASE SSGCID
Ref.: STRUCTURE OF AN ADP-RIBOSYLATION FACTOR, ARF1, FROM ENTAMOEBA HISTOLYTICA BOUND TO MG(2+)-GDP. ACTA CRYSTALLOGR.,SECT.F V. 71 594 2015
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
5 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
50% Homology Family (19)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 4V0K - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4V0L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
3 2X77 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1RRG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1HUR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 1O3Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
7 1FZQ Kd = 24 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 1Z6Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 1ZJ6 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
10 1YZG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 3N5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 1E0S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 1ZD9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 2AL7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
15 3AQ4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 4Y0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4YLG - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 1MR3 - G3D C10 H16 N5 O14 P3 c1nc2c(n1[....
19 4BAS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4YLG; Ligand: GDP; Similar sites found: 417
This union binding pocket(no: 1) in the query (biounit: 4ylg.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1KAO GDP 0.000000004255 0.67259 None
2 1LVG ADP 0.0000001088 0.66963 None
3 3Q72 GNP 0.000000000152 0.65575 None
4 2GJ8 ALF GDP 0.000000002036 0.58155 None
5 1JJV ATP 0.00003387 0.54812 None
6 1UKZ ADP 0.0004459 0.47735 None
7 1D2N ANP 0.0004058 0.43842 None
8 3A4M ADP 0.0000006775 0.5049 1.15385
9 1KO8 6PG 0.000231 0.45689 1.15607
10 2QG6 NMN 0.0002945 0.405 1.15607
11 3BOS CDP 0.00004351 0.52315 1.7341
12 1OXV ANP 0.000007682 0.47563 1.7341
13 1P72 ADP 0.0004813 0.47437 1.7341
14 1IN4 ADP 0.0002525 0.46694 1.7341
15 4TTQ ATP 0.00004497 0.46646 1.7341
16 2ZPA ADP 0.0003217 0.45056 1.7341
17 4WOP CTP 0.001708 0.4145 1.7341
18 1G3Q ADP 0.00000856 0.54927 2.31214
19 2B6N ALA PRO THR 0.01912 0.40764 2.31214
20 1H65 GDP 0.000009286 0.49674 2.59259
21 4U5X GNP 0.00000009565 0.61701 2.89017
22 3IIJ ADP 0.00000659 0.56241 2.89017
23 2ZFI ADP 0.000007979 0.55844 2.89017
24 4PX9 ADP 0.00009974 0.51277 2.89017
25 4QOS ADP 0.0005719 0.45877 2.89017
26 2I4I AMP 0.003166 0.4167 2.89017
27 1VHT BA3 0.000831 0.43142 3.21101
28 4B47 GDP 0.000000000009359 0.85812 3.46821
29 3BFV ADP 0.000002367 0.58371 3.46821
30 5GJC ATP 0.00001903 0.54035 3.46821
31 2HF9 GSP 0.0000007098 0.50983 3.46821
32 2DPY ADP 0.0002252 0.50225 3.46821
33 5GVR LMR 0.0003043 0.49645 3.46821
34 2FAH GDP 0.0001419 0.4808 3.46821
35 4LJ9 ACP 0.0007187 0.46482 3.46821
36 1YTM ATP 0.000152 0.45727 3.46821
37 4A4Z ANP 0.001441 0.45034 3.46821
38 3DZD ADP 0.0006931 0.45009 3.46821
39 4FCW ADP 0.0003393 0.44086 3.46821
40 1T8U A3P 0.003424 0.4192 3.46821
41 4LC1 GDP 0.000000002522 0.72607 4.04624
42 3UIE ANP 0.00001038 0.50723 4.04624
43 1Z6T ADP 0.00006735 0.48959 4.04624
44 2CHG ANP 0.0005528 0.44975 4.04624
45 1W5T ANP 0.0007216 0.44907 4.04624
46 5WRJ A3P 0.002519 0.43055 4.04624
47 1W5T ADP 0.002203 0.42357 4.04624
48 3BER AMP 0.007038 0.41729 4.04624
49 2D2F ADP 0.00002784 0.40263 4.04624
50 5WRI A3P 0.002514 0.4023 4.04624
51 5FG3 GDP 0.00000000003483 0.67673 4.62428
52 3E70 GDP 0.0000003423 0.61459 4.62428
53 3PQC GDP 0.0000001524 0.58399 4.62428
54 1IWE IMP 0.0003819 0.52747 4.62428
55 3ZFD ANP 0.00003926 0.51184 4.62428
56 1SVM ATP 0.0009928 0.47613 4.62428
57 2XAU ADP 0.0003195 0.47031 4.62428
58 1G6H ADP 0.0000003303 0.46334 4.62428
59 3KJI ADP 0.002316 0.45014 4.62428
60 2Z5F A3P 0.0008071 0.44692 4.62428
61 3BFX A3P 0.001041 0.43037 4.62428
62 2PEZ DAT 0.00003261 0.41208 4.62428
63 2PEZ GGZ 0.00003261 0.41208 4.62428
64 3CV2 OXL 0.0183 0.41144 4.62428
65 3IUY AMP 0.001481 0.41082 4.62428
66 1NST A3P 0.004932 0.40829 4.62428
67 1JG3 ADN 0.01345 0.40482 4.62428
68 1GUA GNP 0.00000001379 0.55635 4.93827
69 1D2E GDP 0.000000002885 0.68991 5.20231
70 2VVG ADP 0.0000002291 0.67464 5.20231
71 3TK1 GDP 0.0000000001402 0.64029 5.20231
72 4LPS GDP 0.000000009981 0.61671 5.20231
73 2QEN ADP 0.000005427 0.53726 5.20231
74 1FP6 ADP 0.00002089 0.50351 5.20231
75 2AWN ADP 0.0000002058 0.45164 5.20231
76 2ZPT A3P 0.009678 0.43302 5.20231
77 2GWH A3P 0.003183 0.4166 5.20231
78 5MEX SZZ 0.01124 0.41657 5.20231
79 1VKJ A3P 0.005357 0.41061 5.20231
80 3QKT ANP 0.0005523 0.41021 5.20231
81 4GBM A3P 0.001004 0.41014 5.20231
82 4D42 NAP 0.02744 0.40918 5.20231
83 4D42 W0I 0.02744 0.40918 5.20231
84 5MEX PAP 0.007344 0.40268 5.20231
85 1G7C 5GP 0.00000003427 0.6718 5.31915
86 4IDN GNP 0.0002936 0.43653 5.47046
87 1GOJ ADP 0.0000001725 0.68281 5.78035
88 1SKQ GDP 0.00000000004918 0.67244 5.78035
89 1TQ4 GDP 0.000000007797 0.62784 5.78035
90 2OFW ADX 0.0000488 0.5294 5.78035
91 1X6V ADP 0.00003031 0.52466 5.78035
92 3ZS9 ADP ALF 0.00002844 0.52207 5.78035
93 2ZR9 DTP 0.000002059 0.51229 5.78035
94 3VX3 ADP 0.00004787 0.49862 5.78035
95 2VB6 ADP BEF 0.0001062 0.4902 5.78035
96 5N69 ADP 0.0001145 0.48494 5.78035
97 4PFO ADP 0.000196 0.48225 5.78035
98 4D81 ADP 0.0001378 0.48137 5.78035
99 2IXE ATP 0.0002807 0.4693 5.78035
100 3KTA AP5 0.0001861 0.46231 5.78035
101 1QF5 GDP 0.0118 0.45255 5.78035
102 1QF5 RPL 0.0118 0.45255 5.78035
103 2WOJ ADP ALF 0.00002598 0.44829 5.78035
104 4IOK ADP 0.009177 0.43708 5.78035
105 4IOK XPO 0.007755 0.4362 5.78035
106 1V8K ANP 0.0000143 0.5463 6.09756
107 2HCJ GDP 0.00000000001588 0.84683 6.35838
108 2BVN GNP 0.0000000005052 0.69824 6.35838
109 1D8T GDP 0.00000000002594 0.6975 6.35838
110 1YRB GDP 0.0000000008923 0.68769 6.35838
111 4NCN GTP 0.000000005614 0.60401 6.35838
112 4AG5 ADP 0.000003538 0.60124 6.35838
113 1JI0 ATP 0.000003282 0.59495 6.35838
114 3B5J 12D 0.00001721 0.55862 6.35838
115 4MKF AP5 0.0002115 0.5018 6.35838
116 2BEK ATP 0.0005453 0.47861 6.35838
117 2Y65 ADP 0.000001347 0.4683 6.35838
118 4OI4 ATP 0.0004427 0.46252 6.35838
119 4HSE ADP 0.0001082 0.45553 6.35838
120 2W58 ADP 0.000001536 0.4459 6.35838
121 3DKP ADP 0.000232 0.43843 6.35838
122 2IS6 ADP 0.0001906 0.43792 6.35838
123 4TMK T5A 0.003984 0.43312 6.35838
124 1NY5 ADP 0.00137 0.43257 6.35838
125 2JAQ DCP 0.006636 0.40999 6.35838
126 4KBF AMP 0.001998 0.44878 6.84932
127 1MKY GDP 0.000000000001417 0.88175 6.93642
128 3A1S GDP 0.00000002895 0.60693 6.93642
129 4CVN ADP 0.000009288 0.57215 6.93642
130 2C04 GCP 0.000005856 0.53582 6.93642
131 5H56 TYD 0.00005103 0.51609 6.93642
132 5H56 ADP 0.00005103 0.51609 6.93642
133 1XKV ATP 0.0001281 0.48841 6.93642
134 1NJF AGS 0.0001206 0.48559 6.93642
135 2B8W ALF 5GP 0.0001588 0.48442 6.93642
136 2JLR ANP 0.0001316 0.48225 6.93642
137 3FYH ADP 0.0002453 0.47595 6.93642
138 1NJF ADP 0.0001659 0.47494 6.93642
139 4GOX A3P 0.0002803 0.47139 6.93642
140 3NHB ADP 0.000002906 0.46597 6.93642
141 2GDJ ANP 0.0000586 0.46188 6.93642
142 2WHX ADP 0.00001504 0.44492 6.93642
143 1F5N GNP 0.0002466 0.41205 6.93642
144 4R2I ANP 0.001009 0.46936 7.14286
145 5HCN GCP 0.00000000261 0.71353 7.51445
146 1YQT ADP 0.00001483 0.5689 7.51445
147 2XTN GTP 0.000002289 0.56456 7.51445
148 1SQ5 ADP 0.00002415 0.52823 7.51445
149 4ZNL BEF ADP 0.00004412 0.516 7.51445
150 1ZIN AP5 0.0002 0.50171 7.51445
151 5I34 GDP 0.00001173 0.49557 7.51445
152 4ZG4 VO4 ADP 0.0001524 0.48319 7.51445
153 1OS1 ATP 0.000766 0.46053 7.51445
154 1OS1 PYR 0.0008278 0.46053 7.51445
155 5MZN ADP 0.003707 0.44081 7.51445
156 4PJ3 ANP 0.004124 0.41553 7.51445
157 4KFU ACP 0.000001828 0.4802 7.54717
158 1DAR GDP 0.0000000006663 0.75376 8.09249
159 1JWY GDP 0.00000007641 0.60742 8.09249
160 4BQS ADP 0.000009889 0.55397 8.09249
161 3P4X ADP 0.00001577 0.47224 8.09249
162 4XVU ATP 0.00002396 0.472 8.09249
163 3TBK ANP 0.001015 0.46923 8.09249
164 1JWY ADP 0.00007735 0.46141 8.09249
165 3DC4 ADP 0.00001428 0.45857 8.09249
166 5E5U MLI 0.007321 0.4424 8.09249
167 3MGB PAP 0.0033 0.41991 8.09249
168 2WIC GNP 0.0000000002181 0.7639 8.67052
169 1SVI GDP 0.000000002041 0.74319 8.67052
170 4R98 GNH 0.000000002189 0.63548 8.67052
171 4WZ6 ATP 0.000006814 0.58701 8.67052
172 4H1V GNP 0.0000005946 0.57911 8.67052
173 4HDO GNP 0.00000001499 0.55548 8.67052
174 1WF3 GNP 0.00000002319 0.54895 8.67052
175 5L3W GDP 0.000002533 0.53432 8.67052
176 1OYY AGS 0.0004966 0.47251 8.67052
177 2FSH ANP 0.001447 0.45567 8.67052
178 3B7G ANP 0.0007828 0.42545 8.67052
179 3B9Q MLI 0.000003325 0.60075 9.24856
180 1XX6 ADP 0.0000982 0.52769 9.24856
181 5L3R GCP 0.0000007145 0.51902 9.24856
182 1BG2 ADP 0.0000002985 0.4701 9.24856
183 1T5C ADP 0.0000007136 0.46013 9.24856
184 2C78 GNP 0.00000000217 0.69618 9.82659
185 2C77 GNP 0.000000004541 0.67858 9.82659
186 5BQ5 ADP BEF 0.0001533 0.48485 9.82659
187 1B7T ADP 0.0002579 0.47455 9.82659
188 3RC3 ANP 0.004155 0.43313 9.82659
189 4QM7 GTP 0.00002973 0.53107 9.94152
190 2XT3 ADP 0.000001367 0.62821 10.4046
191 1ION ADP 0.00002749 0.5189 10.4046
192 2Q2Y ADP 0.0006271 0.47817 10.4046
193 2Q2Y MKR 0.0006286 0.47693 10.4046
194 4U00 ADP 0.0000008428 0.45182 10.4046
195 1AQU A3P 0.003645 0.41402 10.4046
196 4YS0 ADP 0.004045 0.41205 10.4046
197 1KK8 BEF ADP 0.0002303 0.46632 10.7914
198 4XTR ADP 0.00004088 0.4888 10.8108
199 4XTR ATP 0.00002026 0.47435 10.8108
200 2QN6 GDP 0.0000000000174 0.84488 10.9827
201 4RD0 GDP 0.0000000007696 0.71616 10.9827
202 5L3V GDP 0.0000002231 0.61427 10.9827
203 1W0J ADP 0.000008237 0.53589 10.9827
204 5L3S GNP 0.0000006863 0.52022 10.9827
205 1IHU AF3 0.00001679 0.48483 10.9827
206 1IHU ADP 0.00001815 0.47473 10.9827
207 3COB ADP 0.000001058 0.47177 10.9827
208 1W0J ADP BEF 0.0006968 0.43719 10.9827
209 5L3S G 0.00637 0.43499 10.9827
210 1U0J ADP 0.000316 0.42342 10.9827
211 1YXM ADE 0.006545 0.42042 10.9827
212 5TSH ANP 0.00001893 0.47829 11.5607
213 3QF7 ANP 0.0001236 0.46807 11.5607
214 5TSH ADP 0.0000345 0.43845 11.5607
215 3TMK T5A 0.0002158 0.40022 11.5607
216 1PUJ GNP 0.0000000002023 0.74134 12.1387
217 3EC1 GDP 0.0000000009621 0.73378 12.1387
218 3H4S ADP 0.000001608 0.62614 12.1387
219 5KSP GDP 0.0000002659 0.61972 12.1387
220 1F9V ADP 0.00000638 0.58763 12.1387
221 1M7G ADX 0.00001791 0.53878 12.1387
222 1M7G ADP 0.00002774 0.52642 12.1387
223 1M7G AV2 0.0000004554 0.52389 12.1387
224 2VF7 ADP 0.0001766 0.48785 12.1387
225 4FRZ ADP 0.000005979 0.46167 12.1387
226 5CK5 GDP 0.0000000002185 0.64861 12.7168
227 5KSZ GCP 0.000001161 0.5816 12.7168
228 1G7S GDP 0.0000000002829 0.75862 13.2948
229 5KUT GDP 0.00000000585 0.62582 13.2948
230 4YMU ATP 0.00002402 0.54315 13.2948
231 4R43 GDP 0.00007993 0.51051 13.2948
232 3H86 AP5 0.0006969 0.46971 13.2948
233 1FNN ADP 0.0001744 0.46199 13.2948
234 3R7F CP 0.004858 0.43809 13.2948
235 2PL3 ADP 0.0003023 0.4891 13.8728
236 4HI0 GDP 0.00000001199 0.62095 14.4509
237 2IYL GDP 0.0000005933 0.54195 14.4509
238 3FWY ADP 0.000008685 0.52836 14.4509
239 5I0H ADP BEF 0.00009898 0.48714 14.4509
240 5M04 GDP 0.000000000005071 0.70595 15.0289
241 2QZ4 ADP 0.0001151 0.49054 15.0289
242 3ZIA ATP 0.000006936 0.50496 15.6069
243 4IEE AGS 0.0001442 0.5049 15.6069
244 3ZIA ADP 0.00001954 0.50468 15.6069
245 3FVQ ATP 0.0005121 0.45564 15.6069
246 2V7Q ATP 0.000008128 0.5114 16
247 2CK3 ADP 0.0006937 0.45381 16
248 2CK3 ANP 0.0008211 0.44448 16
249 2V7Q ADP 0.0003127 0.43281 16
250 1KK1 GNP 0.00000000007161 0.66824 16.185
251 2ZE7 AMP 0.00489 0.41921 16.185
252 2ZE7 DST 0.005289 0.41921 16.185
253 1JJ7 ADP 0.0000003019 0.67988 16.763
254 3RLF ANP 0.0005401 0.45867 16.763
255 5X40 ACP 0.0002477 0.47378 17.341
256 1L2T ATP 0.0005748 0.45935 17.341
257 3DEF GDP 0.000003127 0.53888 17.9191
258 2D7D ADP 0.0008505 0.41605 17.9191
259 1R6B ADP 0.0002222 0.4832 18.4971
260 5HR5 ADP 0.0001357 0.47634 18.4971
261 4P32 ADP 0.0001613 0.44376 18.8755
262 3WXM GTP 0.00000001253 0.67135 19.0751
263 1E96 GTP 0.0000001552 0.62208 19.0751
264 1I4D GDP 0.000000006861 0.71732 19.6532
265 1RYH GNP 0.00000001388 0.62572 19.6532
266 1DS6 GDP 0.000000004618 0.61983 19.6532
267 2FJU GSP 0.0000001504 0.57783 19.6532
268 1HE1 GDP 0.0000001544 0.57712 19.6532
269 2WKQ GTP 0.0000002063 0.54927 19.6532
270 3SBD GNP 0.0000001843 0.53256 19.6532
271 1HE1 AF3 0.01901 0.4048 19.6532
272 3W5J GDP 0.00000001631 0.72609 20.2312
273 2J0V GDP 0.00000000972 0.68686 20.2312
274 2W2X GSP 0.00000006976 0.59144 20.2312
275 2XTZ GSP 0.000000003879 0.58562 20.8092
276 3Q85 GNP 0.00000000001496 0.70676 21.3018
277 2ZEJ GDP 0.000000005232 0.56935 21.9653
278 3M1I GTP 0.000000006559 0.56516 21.9653
279 3GJ0 GDP 0.0000000001275 0.78816 22.5434
280 3GJ3 GDP 0.0000000001289 0.78792 22.5434
281 3GJ7 GDP 0.0000000001719 0.78194 22.5434
282 3GJ8 GDP 0.0000000001804 0.76775 22.5434
283 3GJ5 GDP 0.000000000234 0.76247 22.5434
284 5UWP GNP 0.000000005302 0.69378 22.5434
285 4HAT GNP 0.000000006312 0.69033 22.5434
286 5BXQ GDP 0.0000000001312 0.68955 22.5434
287 5UWT GNP 0.000000005856 0.68908 22.5434
288 5UWR GNP 0.000000005904 0.68892 22.5434
289 5UWI GNP 0.000000006192 0.68798 22.5434
290 1IBR GNP 0.000000007515 0.68417 22.5434
291 3GJ4 GDP 0.0000000001818 0.66984 22.5434
292 1G4U GDP 0.0000001915 0.5866 22.5434
293 1AZT GSP 0.0000000003589 0.58523 22.5434
294 5UWQ GNP 0.000000004519 0.5706 22.5434
295 5UWW GNP 0.000000005054 0.5693 22.5434
296 5DIF GNP 0.000000005042 0.56919 22.5434
297 5UWU GNP 0.000000005099 0.56905 22.5434
298 1CS4 GSP 0.000000002729 0.56869 22.5434
299 5UWJ GNP 0.000000005343 0.56837 22.5434
300 5UWO GNP 0.00000000548 0.56816 22.5434
301 5DHF GNP 0.000000006469 0.56538 22.5434
302 5UWH GNP 0.000000007102 0.5643 22.5434
303 5UWS GNP 0.000000005719 0.55684 22.5434
304 5DI9 GNP 0.00000000667 0.55473 22.5434
305 1MH1 GNP 0.0000001275 0.52484 22.5434
306 1WA5 GTP 0.00000001351 0.51774 22.5434
307 1GWN GTP 0.0000002374 0.60276 23.1214
308 1M7B GTP 0.0000001535 0.57699 23.1214
309 2ZJ5 ADP 0.007555 0.42837 23.1214
310 4NON GDP 0.000000002799 0.70641 24.2775
311 2CJW GDP 0.000000000001902 0.87562 24.8555
312 2HT6 GDP 0.000000000004491 0.87378 24.8555
313 5LB3 ADP 0.0001565 0.50315 24.8555
314 1TAD ALF 0.0000000003625 0.58594 26.0116
315 1TAD GDP 0.0000000003625 0.58594 26.0116
316 1Z2A GDP 0.000000006149 0.60271 26.1905
317 1GOT GDP 0.0000000004281 0.72746 26.5896
318 2NGR GDP 0.00000002981 0.66412 26.5896
319 1A4R GNH 0.00000006274 0.62166 26.5896
320 1A4R GDP 0.00000005218 0.61016 26.5896
321 1GRN GDP 0.0000002751 0.59369 26.5896
322 4ITR GDP 0.0000002226 0.58365 26.5896
323 2NGR AF3 0.01679 0.40755 26.5896
324 4DCT GDP 0.0000000004114 0.75102 27.1676
325 2RCN GDP 0.0000000001051 0.79217 27.7457
326 2ODE ALF GDP 0.0000000002945 0.75381 27.7457
327 2OM2 GDP 0.0000000003694 0.68178 27.7457
328 5KDO GDP 0.0000000004704 0.6776 27.7457
329 1Y3A GDP 0.0000000003892 0.64854 27.7457
330 1GP2 GDP 0.0000000005558 0.64351 27.7457
331 1BH2 GSP 0.0000000005671 0.57965 27.7457
332 1NF3 GNP 0.0000003159 0.52211 27.7457
333 1Z0A GDP 0.0000000002096 0.75235 28.3237
334 2A5J GDP 0.0000000002475 0.74905 28.3237
335 1FQJ GDP 0.0000000002141 0.74437 28.3237
336 1FQK GDP 0.0000000004318 0.64722 28.3237
337 1SVK ALF GDP 0.0000000002668 0.57753 28.3237
338 1Z0F GDP 0.0000000001254 0.77513 28.9017
339 4DID GDP 0.00000002983 0.60126 28.9017
340 3REF GDP 0.00000008568 0.57397 28.9017
341 3T1O GDP 0.0000000002815 0.74651 29.4798
342 2BME GNP 0.000000003171 0.69826 29.4798
343 3T12 GDP ALF 0.00000000104 0.64682 29.4798
344 5UQW GDP 0.000000002926 0.69682 29.6296
345 5TAR GDP 0.000000001419 0.70364 30.2703
346 5TB5 GDP 0.0000000005843 0.67979 30.2703
347 3T5G GDP 0.000000000366 0.7413 31.2139
348 3CX8 GSP 0.0000000005566 0.74117 31.2139
349 3AB3 GDP 0.000000002869 0.68737 31.2139
350 1XTQ GDP 0.000000001082 0.63092 31.2139
351 1VG9 GDP 0.000000000227 0.76309 31.7919
352 1VG0 GDP 0.000000000908 0.71228 31.7919
353 1VG1 GDP 0.00000000004975 0.70519 31.7919
354 1VG8 GNP 0.00000000264 0.70476 31.7919
355 1X1R GDP 0.000000009419 0.56021 32.0225
356 4D0N GDP 0.000000005443 0.61476 32.3699
357 1CXZ GSP 0.0000002106 0.60799 32.3699
358 2C5L GTP 0.00000000494 0.5703 32.3699
359 2KIN ADP 0.0000004603 0.46397 32.3699
360 4K81 GTP 0.000000001203 0.58029 32.7485
361 2GCN GDP 0.0000001386 0.61605 32.948
362 2GCO GNP 0.0000001378 0.60677 32.948
363 3ZQ6 ADP ALF 0.000007785 0.46493 32.948
364 5O2T GSP 0.000000005957 0.56752 33.1361
365 5XCO GDP 0.0000000005029 0.69866 33.3333
366 4DSU GDP 0.000000003022 0.57637 33.526
367 1LFD GNP 0.000000005332 0.58022 33.5329
368 3KUD GDP 0.000000004662 0.67807 33.7349
369 3DDC GNP 0.00000001138 0.67602 33.7349
370 1WQ1 GDP 0.000000007421 0.67565 33.7349
371 2UZI GTP 0.000000004609 0.58278 33.7349
372 1NVV GNP 0.000000009458 0.56105 33.7349
373 1CLU DBG 0.000000005198 0.46163 33.7349
374 2FFQ GSP 0.000000002972 0.57807 33.9181
375 2BCG GDP 0.000000002252 0.66608 34.104
376 5HPY GDP 0.0000001922 0.60048 34.104
377 1OW3 GDP 0.0000002605 0.59472 34.104
378 1YZN GNP 0.000000007038 0.56497 34.104
379 5IRC GDP 0.000000735 0.55599 34.104
380 1TX4 ALF GDP 0.0000005049 0.53536 34.104
381 1NVU GTP 0.000000006125 0.6882 34.3373
382 5UFQ GNP 0.00000000123 0.60155 34.3373
383 2WJG GDP 0.0000000002104 0.77773 34.6821
384 1TU3 GNP 0.0000000009678 0.7215 35.0877
385 3MJH GTP 0.000000001504 0.5997 35.119
386 1NRJ GTP 0.00000001414 0.61928 35.2601
387 1R2Q GNP 0.0000000005318 0.75498 35.2941
388 1Z08 GNP 0.00000000832 0.67343 35.2941
389 1G16 GDP 0.00000003683 0.6416 35.2941
390 1YZQ GNP 0.000000003031 0.57727 35.2941
391 3QBT GNP 0.000000003434 0.58714 35.8382
392 1Z0K GTP 0.000000003637 0.6113 36.0465
393 2WJH GDP 0.000000001815 0.64975 36.1446
394 2WJH FLC 0.0000001703 0.58234 36.1446
395 1KMQ GNP 0.000000327 0.60228 36.4162
396 1KY3 GDP 0.00000000382 0.66128 36.9942
397 2F9L GDP 0.000000005566 0.60502 38.1503
398 1Z0J GTP 0.000000005534 0.69019 38.2353
399 3RAB GNP 0.000000002654 0.70174 38.4615
400 2G77 GDP 0.000000002078 0.68615 38.7283
401 2FH5 GTP 0.0000000009475 0.66376 38.7283
402 1YVD GNP 0.000000004595 0.69099 39.0533
403 3RWO GDP 0.000000005306 0.68818 39.3064
404 1ZC3 GNP 0.0000000009693 0.72447 39.8844
405 2A9K GDP 0.00000000349 0.67634 40.4624
406 1S8F GDP 0.000000002579 0.56793 40.4624
407 1OIX GDP 0.000000003584 0.69586 41.0405
408 1OIV GDP 0.000000006197 0.68514 41.6185
409 1U8Z GDP 0.0000000005709 0.72536 41.6667
410 2HV8 GTP 0.000000003895 0.58571 41.8605
411 1D5C GDP 0.0000000008285 0.70356 41.9753
412 1Z06 GNP 0.00000000267 0.6986 42.1965
413 4C4P GNP 0.000000003125 0.57652 42.1965
414 1EK0 GNP 0.00000001475 0.56578 42.3529
415 2D7C GTP 0.000000003003 0.69933 42.515
416 3BC1 GNP 0.00000000326 0.69772 42.7746
417 1F6B GDP 0.00000000002567 0.71992 46.2428
Pocket No.: 2; Query (leader) PDB : 4YLG; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 4ylg.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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