Receptor
PDB id Resolution Class Description Source Keywords
4Y3O 2.2 Å EC: 1.14.11.-1.14.11.27 CRYSTAL STRUCTURE OF RIBOSOMAL OXYGENASE NO66 IN COMPLEX WIT SUBSTRATE RPL8 PEPTIDE AND NI(II) AND COFACTOR N-OXALYGLYCI HOMO SAPIENS RIBOSOMAL OXYGENASE QUATERNARY COMPOUND STRUCTURE JMJC-DOMOXIDOREDUCTASE-PEPTIDE COMPLEX
Ref.: STRUCTURE OF THE JMJC DOMAIN-CONTAINING PROTEIN NO6 COMPLEXED WITH RIBOSOMAL PROTEIN RPL8. ACTA CRYSTALLOGR.,SECT.D V. 71 1955 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACT B:706;
Invalid;
none;
submit data
59.044 C2 H3 O2 CC(=O...
GOL B:703;
B:705;
B:704;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
NI A:701;
B:701;
Part of Protein;
Part of Protein;
none;
none;
submit data
58.693 Ni [Ni+2...
OGA A:702;
B:702;
Valid;
Valid;
none;
none;
submit data
147.086 C4 H5 N O5 C(C(=...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4Y3O 2.2 Å EC: 1.14.11.-1.14.11.27 CRYSTAL STRUCTURE OF RIBOSOMAL OXYGENASE NO66 IN COMPLEX WIT SUBSTRATE RPL8 PEPTIDE AND NI(II) AND COFACTOR N-OXALYGLYCI HOMO SAPIENS RIBOSOMAL OXYGENASE QUATERNARY COMPOUND STRUCTURE JMJC-DOMOXIDOREDUCTASE-PEPTIDE COMPLEX
Ref.: STRUCTURE OF THE JMJC DOMAIN-CONTAINING PROTEIN NO6 COMPLEXED WITH RIBOSOMAL PROTEIN RPL8. ACTA CRYSTALLOGR.,SECT.D V. 71 1955 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4Y3O - OGA C4 H5 N O5 C(C(=O)O)N....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4Y3O - OGA C4 H5 N O5 C(C(=O)O)N....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 4Y3O - OGA C4 H5 N O5 C(C(=O)O)N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OGA; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 OGA 1 1
2 AAC 0.461538 0.827586
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4Y3O; Ligand: OGA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4y3o.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 4Y3O; Ligand: OGA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 4y3o.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
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