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Receptor
PDB id Resolution Class Description Source Keywords
4Z87 2.25 Å EC: 1.1.1.205 STRUCTURE OF THE IMP DEHYDROGENASE FROM ASHBYA GOSSYPII BOUN ASHBYA GOSSYPII (STRAIN ATCC 10895) IMP DEHYDRGOENASE BATEMAN DOMAIN OXIDOREDUCTASE
Ref.: GUANINE NUCLEOTIDE BINDING TO THE BATEMAN DOMAIN ME THE ALLOSTERIC INHIBITION OF EUKARYOTIC IMP DEHYDRO NAT COMMUN V. 6 8923 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP B:603;
C:603;
B:602;
D:601;
C:602;
A:604;
C:604;
D:602;
D:603;
A:602;
A:603;
B:604;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
Atoms found LESS than expected: % Diff = 0;
none;
none;
Atoms found LESS than expected: % Diff = 0;
none;
none;
none;
Ki = 210 uM
443.201 C10 H15 N5 O11 P2 c1nc2...
ACT C:606;
A:606;
C:607;
B:606;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
59.044 C2 H3 O2 CC(=O...
K C:605;
B:605;
D:604;
A:605;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
39.098 K [K+]
5GP C:601;
B:601;
A:601;
D:600;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
363.221 C10 H14 N5 O8 P c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4Z87 2.25 Å EC: 1.1.1.205 STRUCTURE OF THE IMP DEHYDROGENASE FROM ASHBYA GOSSYPII BOUN ASHBYA GOSSYPII (STRAIN ATCC 10895) IMP DEHYDRGOENASE BATEMAN DOMAIN OXIDOREDUCTASE
Ref.: GUANINE NUCLEOTIDE BINDING TO THE BATEMAN DOMAIN ME THE ALLOSTERIC INHIBITION OF EUKARYOTIC IMP DEHYDRO NAT COMMUN V. 6 8923 2015
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 5MCP - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
2 4Z87 Ki = 210 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5TC3 - 5GP C10 H14 N5 O8 P c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 9 families.
1 5MCP - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
2 4Z87 Ki = 210 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5TC3 - 5GP C10 H14 N5 O8 P c1nc2c(n1[....
50% Homology Family (16)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 5MCP - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
2 4Z87 Ki = 210 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5TC3 - 5GP C10 H14 N5 O8 P c1nc2c(n1[....
4 1PVN Ki = 0.15 nM MZP C9 H12 N3 O9 P c1[nH+]c(c....
5 5AHN - IMP C10 H13 N4 O8 P c1nc2c(n1[....
6 1MEW - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 1ME7 Ki = 65 nM RVP C8 H13 N4 O8 P c1nc(nn1[C....
8 1MEH - MOA C17 H20 O6 Cc1c2c(c(c....
9 2C6Q - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
10 4ZQP Ki = 1580 nM KP3 C28 H32 N8 O8 Cc1c2c(c(c....
11 4ZQM - XMP C10 H14 N4 O9 P c1[nH+]c2c....
12 5AHM - IMP C10 H13 N4 O8 P c1nc2c(n1[....
13 4Z0G Ki = 600 uM 5GP C10 H14 N5 O8 P c1nc2c(n1[....
14 4XTI - IMP C10 H13 N4 O8 P c1nc2c(n1[....
15 4XTD - IMP C10 H13 N4 O8 P c1nc2c(n1[....
16 5K4X ic50 = 0.38 uM 6Q9 C12 H13 N5 O2 S Cc1c(c(n[n....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Ligand no: 2; Ligand: 5GP; Similar ligands found: 159
No: Ligand ECFP6 Tc MDL keys Tc
1 G 1 1
2 5GP 1 1
3 GDP 0.828947 0.986486
4 GP3 0.815789 0.960526
5 GP2 0.805195 0.948052
6 GTP 0.797468 0.986486
7 GNH 0.794872 0.973333
8 G2P 0.777778 0.948052
9 GMV 0.775 0.960526
10 G1R 0.765432 0.973333
11 GCP 0.765432 0.960526
12 GAV 0.759036 0.948052
13 GSP 0.756098 0.935897
14 GNP 0.756098 0.960526
15 9GM 0.756098 0.960526
16 ALF 5GP 0.753086 0.9
17 GMP 0.732394 0.866667
18 GPG 0.724138 0.948052
19 G2R 0.712644 0.948052
20 ALF GDP 0.701149 0.9
21 GDP ALF 0.701149 0.9
22 GDP AF3 0.701149 0.9
23 GKE 0.692308 0.948052
24 Y9Z 0.692308 0.890244
25 GDC 0.692308 0.948052
26 GDD 0.692308 0.948052
27 YGP 0.681319 0.9125
28 G3A 0.677419 0.960526
29 G5P 0.670213 0.960526
30 GFB 0.666667 0.948052
31 GDR 0.666667 0.948052
32 GTG 0.666667 0.924051
33 6CK 0.659574 0.924051
34 3GP 0.65 0.959459
35 G G 0.648936 0.960526
36 GKD 0.645833 0.948052
37 JB2 0.645833 0.948052
38 GDX 0.639175 0.960526
39 GPD 0.639175 0.9125
40 GDP 7MG 0.635417 0.923077
41 G3D 0.617977 0.972973
42 U2G 0.617647 0.924051
43 2GP 0.609756 0.946667
44 IMP 0.609756 0.972603
45 JB3 0.607843 0.935897
46 CG2 0.605769 0.924051
47 G4P 0.604396 0.972973
48 DGP 0.60241 0.922078
49 DG 0.60241 0.922078
50 FEG 0.601942 0.890244
51 NGD 0.601942 0.948052
52 ZGP 0.596154 0.879518
53 0O2 0.595745 0.972973
54 2MD 0.584906 0.879518
55 G7M 0.583333 0.960526
56 CAG 0.583333 0.869048
57 G A A A 0.579439 0.935065
58 A G 0.579439 0.947368
59 U A G G 0.574074 0.947368
60 MGD 0.568807 0.879518
61 DBG 0.566372 0.935897
62 PGD 0.5625 0.9125
63 MD1 0.5625 0.879518
64 P2G 0.55814 0.894737
65 GCP G 0.556701 0.933333
66 FE9 0.553571 0.784946
67 P1G 0.545455 0.883117
68 GH3 0.542553 0.96
69 TPG 0.53913 0.829545
70 GPX 0.53125 0.933333
71 DGI 0.527473 0.910256
72 G1R G1R 0.525862 0.911392
73 G U 0.522936 0.911392
74 PGD O 0.521368 0.83908
75 DGT 0.521277 0.910256
76 G4M 0.520325 0.869048
77 AKW 0.513761 0.878049
78 G C 0.513514 0.911392
79 93A 0.511364 0.821429
80 IDP 0.505495 0.959459
81 MGQ 0.505155 0.948052
82 C2R 0.5 0.893333
83 A 0.5 0.905405
84 AMZ 0.5 0.905405
85 BGO 0.5 0.911392
86 AMP 0.5 0.905405
87 AIR 0.493671 0.890411
88 MGV 0.49 0.901235
89 SGP 0.488889 0.8375
90 NIA 0.488095 0.8375
91 GPC 0.474138 0.890244
92 G G G RPC 0.473684 0.886076
93 GGM 0.473684 0.888889
94 71V 0.47191 0.85
95 APC G U 0.470085 0.897436
96 R5I 0.46875 0.933333
97 R7I 0.46875 0.933333
98 MGP 0.46875 0.948052
99 35G 0.468085 0.945946
100 PCG 0.468085 0.945946
101 C2E 0.468085 0.933333
102 G1G 0.466102 0.9125
103 AAM 0.465909 0.905405
104 RMB 0.465909 0.813333
105 FAI 0.465909 0.905405
106 7RA 0.465909 0.918919
107 1RB 0.465116 0.824324
108 6G0 0.463918 0.948052
109 5GP 5GP 0.463158 0.894737
110 G G G C 0.462185 0.924051
111 RBZ 0.45977 0.815789
112 UCG 0.459016 0.923077
113 A G C C 0.458333 0.923077
114 DG DG 0.456311 0.876543
115 G U34 0.45614 0.9
116 IMO 0.449438 0.866667
117 A G U 0.446154 0.9
118 G C C C 0.443548 0.935897
119 IRN 0.443038 0.808219
120 PMO 0.43956 0.792208
121 7RP 0.438202 0.864865
122 GTA 0.436364 0.924051
123 JLN 0.433333 0.88
124 P2P 0.433333 0.842105
125 A G U U 0.42963 0.9
126 XMP 0.428571 0.907895
127 PGS 0.425532 0.804878
128 RVP 0.423529 0.84
129 G2Q 0.423077 0.948052
130 ADP 0.419355 0.906667
131 ABM 0.417582 0.857143
132 A2D 0.417582 0.881579
133 PRT 0.416667 0.945946
134 GUO 0.415842 0.932432
135 AT4 0.414894 0.871795
136 CA0 0.410526 0.883117
137 2SA 0.41 0.871795
138 1YD 0.409091 0.933333
139 4BW 0.409091 0.933333
140 A12 0.408602 0.871795
141 AP2 0.408602 0.871795
142 BA3 0.408602 0.881579
143 6C6 0.408163 0.825
144 25A 0.407767 0.906667
145 NOS 0.406977 0.813333
146 HEJ 0.40625 0.906667
147 ATP 0.40625 0.906667
148 AP5 0.404255 0.881579
149 B4P 0.404255 0.881579
150 ACQ 0.40404 0.883117
151 6IA 0.40404 0.785714
152 ANP 0.40404 0.883117
153 CGP 0.403361 0.878049
154 APC 0.402062 0.871795
155 3ZE 0.402062 0.871795
156 5FA 0.402062 0.906667
157 AQP 0.402062 0.906667
158 N6P 0.4 0.853333
159 AN2 0.4 0.894737
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 4z87.bio2) has 42 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: 129
This union binding pocket(no: 2) in the query (biounit: 4z87.bio2) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 3IWD M2T None
2 2V7B BEZ 1.33333
3 6B9R 2HE 1.55556
4 5W6Y TRP 1.58228
5 1NE6 SP1 1.76678
6 3WBZ ATP 1.84502
7 2CYC TYR 1.86667
8 1C3X 8IG 1.8797
9 2QK4 ATP 1.99115
10 4C2C ALA ALA ALA 2.01794
11 4MZQ 1VU 2.08333
12 4WOE 3S5 2.09524
13 5DMZ ADP 2.19178
14 5X20 AOT 2.24359
15 1ZED PNP 2.47934
16 4UHL VFV 2.69058
17 5JZJ AN2 2.6936
18 3F5A SIA GAL NAG 2.84553
19 5C9P FUC 2.88714
20 2EB5 OXL 2.99625
21 3HQP FDP 3.00601
22 2ZL4 ALA ALA ALA ALA 3.06122
23 1P19 IMP 3.16742
24 3BEO UDP 3.2
25 1RZM E4P 3.25444
26 5TV6 PML 3.33333
27 5W5R PYR 3.34928
28 4P6C RES 3.36134
29 4D52 GXL 3.49206
30 4D52 GIV 3.49206
31 5GLT BGC GAL NAG GAL 3.52113
32 1XVB 3BR 3.52941
33 1N8V BDD 3.57143
34 2JIG PD2 3.57143
35 4BHL ARG 3.65169
36 4BG4 ARG 3.65169
37 2B7N NTM 3.663
38 1GXS BEZ 3.7037
39 2CYB TYR 3.71517
40 3OZG SSI 4
41 3BF1 PAU 4.01606
42 1QB7 ADE 4.23729
43 5CKS GAL 4.2735
44 2HVW DDN 4.34783
45 1LSH PLD 4.38095
46 3ZXE PGZ 4.51128
47 5H9I XAN 4.58333
48 6DZN AE3 4.69484
49 2QRD ATP 4.79042
50 2QRD ADP 4.79042
51 1TKU 5RP 4.90196
52 1HGX 5GP 4.91803
53 4RHS SIA SIA GAL 4.91803
54 5ZJ5 GDP 4.93827
55 2QX0 PH2 5.03145
56 1XT8 CYS 5.13699
57 2YJP CYS 5.15464
58 4RF7 ARG 5.33333
59 5JSP DQY 5.47264
60 1USI PHE 5.49133
61 4XDA RIB 5.50162
62 1SNN 5RP 5.72687
63 6GNO XDI 5.92593
64 1UYY BGC BGC 6.10687
65 2FUE M1P 6.10687
66 3L2B B4P 6.53061
67 5EYY MDM 6.53061
68 1LES GLC FRU 6.62983
69 2DWU DGL 6.88406
70 2BP1 FLC 6.94444
71 4WES HCA 6.9869
72 5TZO 7V7 7.44681
73 3GD8 GOL 7.62332
74 5N2D 8J8 7.63889
75 6G47 SIA 7.6555
76 6G47 SIA SIA 7.6555
77 3CXO 1N5 7.71084
78 3OF1 CMP 7.72358
79 5XQW 8EU 7.8341
80 5H9P TD2 8.22785
81 5TPV TYD 8.49673
82 2BQP GLC 8.54701
83 5YF9 NIO 8.55457
84 2OYH GLY HIS ARG PRO 9.09091
85 2PCU PHE ASN ARG PRO VAL 9.18033
86 5OCG 9R5 9.52381
87 2Y8L ADP 9.82659
88 2Y8L AMP 9.82659
89 1C1D PHE 9.85915
90 2UV4 AMP 9.86842
91 5WXK TYD 10
92 6FA4 D1W 10.4046
93 2V92 ATP 10.828
94 2V92 AMP 10.828
95 2BS5 BGC GAL FUC 11.1111
96 4MUV PCG 11.2676
97 3SHR CMP 11.3712
98 2J9L ATP 11.8919
99 1I7M CG 11.9403
100 5Z7B VNL 12.1212
101 1MZV AMP 12.3404
102 1CBK ROI 12.5
103 1R1Q ACE ARG GLU PTR VAL ASN VAL 13
104 3PQC GDP 13.3333
105 2RIF AMP 13.4752
106 3OCP CMP 13.6691
107 5YZ2 AMP 13.8889
108 3TDH AMP 14.1593
109 3DWQ NGC GAL NGA POL AZI 14.2857
110 1A8S PPI 14.652
111 1UKG MMA 15.4762
112 2PHX MAN MAN 15.4762
113 2PHU MAN MAN 15.4762
114 1Q8S MAN MMA 15.4762
115 1Q8V MAN MAN 15.4762
116 1Q8Q MAN MMA 15.4762
117 2GMM MAN MAN 15.4762
118 1Q8P MAN MMA 15.4762
119 2PHR MAN MAN 15.4762
120 2GNM MAN 15.4762
121 1VKJ A3P 16.1404
122 4UUU SAM 17.4194
123 4RYV ZEA 20
124 3KH5 ADP 21.0714
125 3KH5 AMP 21.0714
126 3KPB SAM 26.2295
127 5N2F 8HW 26.6129
128 5FUI APY 31.0606
129 4GQY AMP 35.7576
Pocket No.: 3; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 4z87.bio2) has 34 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 4z87.bio2) has 34 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 4z87.bio2) has 34 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: 22
This union binding pocket(no: 6) in the query (biounit: 4z87.bio2) has 53 residues
No: Leader PDB Ligand Sequence Similarity
1 5CLO NS8 None
2 4IDT T28 2.24719
3 1R6N 434 2.36967
4 1MJT ITU 3.45821
5 6D61 4AA 4.61538
6 3PUR 2HG 4.7619
7 3P13 RIP 4.86111
8 1H6H PIB 4.8951
9 1Z17 ILE 5.23256
10 3ACC 5GP 5.52486
11 3O5N BR0 6.25
12 2PS1 ORO 7.07965
13 5O0J 8BR 7.50552
14 4PXE GLV 7.90698
15 1Y7P RIP 8.07175
16 4X8N GLU ARG GLU SEP GLU PHE ASP ILE GLU ASP 8.28729
17 4P86 5GP 8.74317
18 1JPA ANP 9.29487
19 2PHT MAN MAN MAN 15.4762
20 1Q8O MAN MMA 15.4762
21 4P83 U5P 16.4835
22 3KPE TM3 25.4902
Pocket No.: 7; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 4z87.bio2) has 69 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 4z87.bio2) has 53 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 4z87.bio2) has 53 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 10; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: 270
This union binding pocket(no: 10) in the query (biounit: 4z87.bio2) has 38 residues
No: Leader PDB Ligand Sequence Similarity
1 2HO2 PRO PRO PRO PRO PRO PRO PRO PRO PRO LEU None
2 1WUW TSU None
3 1CT9 AMP 1.14286
4 1CT9 GLN 1.14286
5 1IA9 ANP 1.42857
6 5A0U CHT 1.52381
7 3NB0 G6P 1.52381
8 1PS9 FMN 1.52381
9 2GK6 ADP 1.71429
10 6AM8 TRP 1.76768
11 4B98 PXG 1.78571
12 3SRV S19 1.80505
13 4FRZ ADP 1.81347
14 2ZWI C5P 1.87668
15 6BE0 COA 1.98676
16 1ZGS XMM 2.01342
17 5GJO PLP 2.03046
18 1H5S TMP 2.04778
19 4L9Z OXL 2.0649
20 5XLS URA 2.06897
21 1U1J MET 2.09524
22 1T3D CYS 2.09524
23 2OO0 XAP 2.12314
24 2OEM 1AE 2.17918
25 4IDT T28 2.24719
26 2QJT AMP 2.27273
27 5ZI9 FLC 2.30769
28 2B4B COA 2.33918
29 3ITJ CIT 2.36686
30 2QV7 ADP 2.37389
31 5XQL C2E 2.4055
32 4CW5 FMN 2.42291
33 4K37 SAM 2.43243
34 4K39 SAM 2.43243
35 2OG2 MLI 2.50696
36 2CJW GDP 2.60417
37 1G2O IMH 2.61194
38 1W8S FBP 2.6616
39 2HS3 FGR 2.66667
40 1YQT ADP 2.66667
41 5XH2 NPO 2.67176
42 4NZF ARB 2.67857
43 4BI7 PGA 2.72374
44 1QDS PGA 2.78884
45 2VQD AP2 2.80172
46 6CUZ FEV 2.83505
47 2Y7G AAE 2.83688
48 2IS6 ADP 2.85714
49 4L80 OXL 2.87356
50 4WZH FMN 2.88184
51 4HKP 16B 2.88462
52 4HKP TKW 2.88462
53 1KBI FMN 2.93542
54 1KBI PYR 2.93542
55 3QTP 2PG 2.94785
56 3A8T ATP 2.94985
57 2FJK 13P 2.95082
58 2F9W PAU 2.95203
59 2VL1 GLY GLY 2.95359
60 5OCS FMN 2.96496
61 3B9Q MLI 2.98013
62 1OIJ AKG 2.99003
63 3TAO PGH 2.99625
64 3HQP OXL 3.00601
65 5NM7 GLY 3.00752
66 2VD9 EPC 3.06905
67 2VD9 IN5 3.06905
68 3QXQ CE5 3.09859
69 1G6H ADP 3.11284
70 2FLI DX5 3.18182
71 1US5 GLU 3.18471
72 4TMC FMN 3.22581
73 3N9R TD3 3.25733
74 2Y88 2ER 3.27869
75 2G37 FAD 3.36391
76 2OFW ADX 3.36538
77 1WOQ BGC 3.37079
78 3GLC R5P 3.38983
79 1TL2 NDG 3.38983
80 3UWV 2PG 3.44828
81 2QCD U5P 3.46154
82 3ESS 18N 3.47826
83 2J5V PCA 3.54223
84 4Y85 499 3.61446
85 1KBJ FMN 3.64078
86 1M5W DXP 3.7037
87 5AEW BNL 3.7234
88 2Q3O FMN 3.83632
89 1GVF PGH 3.84615
90 5M42 FMN 3.94265
91 3HYW DCQ 3.95349
92 3B0P FMN 4
93 5AHO TLA 4.16667
94 5ZXD ATP 4.19048
95 3VKC FPQ 4.1958
96 3NV6 CAM 4.20354
97 1VKF CIT 4.25532
98 1ICP FMN 4.25532
99 5K21 6QF 4.25532
100 6GZD LCI 4.27807
101 4R38 RBF 4.28571
102 2YVE MBT 4.32432
103 3VMG 9CA 4.34783
104 2BTM PGA 4.36508
105 3W6X HZP 4.36681
106 1OX5 1PR 4.38095
107 1Z44 FMN 4.43787
108 1Z48 FMN 4.43787
109 1Z42 FMN 4.43787
110 1Z41 FMN 4.43787
111 4KZV TRE 4.47761
112 1DQX BMP 4.49438
113 2P39 SCR 4.51613
114 6F3M ADN 4.56522
115 6DVH FMN 4.56853
116 3BC9 ACR 4.57143
117 3JUC PCA 4.57516
118 5H4S RAM 4.57746
119 1KJ1 MAN 4.58716
120 3DRW AMP 4.64135
121 1FDJ 2FP 4.6832
122 1FDJ 13P 4.6832
123 4A3U FMN 4.7486
124 1F76 FMN 4.7619
125 5J6Y GLC 4.78723
126 5J6Y BGC 4.78723
127 2Q3R FMN 4.83871
128 1R0X ATP 4.8951
129 4XP7 FNR 4.91329
130 4OB6 S2T 4.98534
131 1DBT U5P 5.02092
132 3I7S PYR 5.13699
133 2HSA FMN 5.22388
134 2XZ9 PYR 5.24691
135 3LM9 ADP 5.29801
136 1TB3 FMN 5.39773
137 5NC1 NAG 5.48523
138 2FT0 ACO 5.53191
139 1Q6O LG6 5.55556
140 5EYW PGA 5.62249
141 3CTL S6P 5.62771
142 2ZX2 RAM 5.64103
143 1V8B ADN 5.84551
144 3EXS 5RP 5.88235
145 6EK3 OUL 5.88235
146 5A5W GUO 5.92885
147 5DYO FLU 5.9633
148 1QH9 LAC 6.03448
149 2WET TRP 6.06654
150 3OIX FMN 6.08696
151 5TSH ADP 6.09524
152 5YV5 ADP 6.09524
153 6BVE PGA 6.12245
154 3KVY URA 6.14887
155 1JCM 137 6.17761
156 5CSS G3P 6.19469
157 3O5N BR0 6.25
158 2QHS OCA 6.32911
159 2CBZ ATP 6.32911
160 4M3P HCS 6.40394
161 1LYX PGA 6.45161
162 4MPO AMP 6.53595
163 3A1S GDP 6.58915
164 5LXB 7A9 6.61157
165 2Z6I FMN 6.62651
166 1TE2 PGA 6.63717
167 1JQN DCO 6.66667
168 5Y79 3PG 6.68693
169 4R8L ASP 6.75325
170 4A34 FUL 6.80272
171 5JIB OIA 6.82493
172 1SW0 PGA 6.85484
173 2YPI PGA 6.88259
174 1LBF 137 6.88259
175 2FKA BEF 6.97674
176 2GJN NIS 7.0122
177 2GJN FMN 7.0122
178 6F1J EDG 7.07692
179 4NAE 1GP 7.11111
180 3W9Z FMN 7.14286
181 2Y5S 78H 7.14286
182 6BKA FMN 7.21925
183 2Z6J FMN 7.22892
184 4ISS TAR 7.2381
185 4RDH AMP 7.29167
186 4RDI ATP 7.29167
187 3G2O SAM 7.35786
188 2JK0 ASP 7.38462
189 4QNW FMN 7.39796
190 1D1Q 4NP 7.45342
191 1JT2 FER 7.46269
192 4XFR CIT 7.49415
193 1TRD PGH 7.6
194 3GD8 GOL 7.62332
195 2F6U CIT 7.69231
196 2OFD NGA 7.74648
197 2OFE NAG 7.74648
198 5LX6 78P 7.8534
199 1FQJ GDP 8.16327
200 1OFD FMN 8.19048
201 4Z2S NAG 8.4507
202 4Z2S NDG 8.4507
203 5E5U MLI 8.54271
204 3HF3 FMN 8.59599
205 4QYS PLR 8.59729
206 4JEJ 1GP 8.60656
207 4UTU LRY 8.73362
208 4UTW RFW 8.73362
209 4P86 5GP 8.74317
210 1TV5 FMN 8.80361
211 5JNW 6LJ 8.80503
212 5IM3 DTP 9.14286
213 1RBL CAP 9.17431
214 2VDH CAP 9.28571
215 4IP7 FBP 9.33333
216 4I9A NCN 9.375
217 5GVH FMN 9.55414
218 1UJP CIT 9.5941
219 4USI AKG 9.74026
220 1C1X HFA 9.85915
221 5NBW 8SK 9.90991
222 4YMZ 13P 9.96016
223 3AXK NDP 10.0775
224 3OVR 5SP 10.0877
225 5V6F MAN BMA MAN 10.1449
226 1WDD CAP 10.1562
227 4RKX 3S9 10.3448
228 3C3N FMN 10.5769
229 2NLI FMN 10.8696
230 2NLI LAC 10.8696
231 3KO0 TFP 10.8911
232 2ZRU FMN 11.1413
233 2RDT FMN 11.3695
234 5N9Z CAP 11.4286
235 3DKP ADP 11.4286
236 5OYA CAP 11.4286
237 3L8H FX1 11.7318
238 2JBH 5GP 12
239 3G4Q MCH 12.3288
240 6DAW ARG 12.5731
241 1OGD RIP 12.9771
242 3ZIA ADP 13.1148
243 3BW2 FMN 13.2791
244 2W2X GSP 13.5135
245 6BFG FMN 13.7845
246 2NLQ GLY 13.8889
247 3W6G FLC 13.8889
248 1P4C FMN 14.4737
249 1AL8 FMN 14.4847
250 4EWN 0VR 14.6245
251 3FXU TSU 15.082
252 1EIX BMQ 15.102
253 2V67 CAP 15.3684
254 2V68 CAP 15.3684
255 2V6A CAP 15.3684
256 1UZD CAP 15.3684
257 1IR2 CAP 15.3684
258 2V63 CAP 15.3684
259 1UZH CAP 15.3684
260 2GNB MAN 15.4762
261 3RHC GSH 15.9292
262 5TCI MLI 15.942
263 4Q4K FMN 15.9664
264 5WHU SIA GAL GLC 16.1074
265 1V3S ATP 19.8276
266 1QPR PPC 20.0704
267 3QH2 3NM 23.9819
268 5C2N NAG 25
269 2BLE 5GP 32.97
270 1N13 AG2 34.6154
Pocket No.: 11; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 11) in the query (biounit: 4z87.bio2) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 12; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 12) in the query (biounit: 4z87.bio2) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 13; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 13) in the query (biounit: 4z87.bio2) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 14; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: 112
This union binding pocket(no: 14) in the query (biounit: 4z87.bio2) has 42 residues
No: Leader PDB Ligand Sequence Similarity
1 2HO2 PRO PRO PRO PRO PRO PRO PRO PRO PRO LEU None
2 5L2R MLA 0.952381
3 6E1Q CFA 0.952381
4 4UZI IMD 1.12108
5 1CT9 AMP 1.14286
6 1ESW ACR 1.4
7 5KJW 53C 1.40515
8 3TDC 0EU 1.71429
9 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 2.04082
10 4WOE ADP 2.09524
11 2Z3U CRR 2.11765
12 1W55 GPP 2.15633
13 5EY0 GTP 2.18978
14 4C4A SAH 2.28571
15 1MXG ACR 2.29885
16 5YJS SAL 2.30769
17 4M38 SAH 2.33236
18 3ACL 3F1 2.36486
19 2J3M PRI 2.47619
20 2ICK DMA 2.57511
21 4CJN QNZ 2.66667
22 4NES UDP 2.6738
23 3G3R ANP 2.71186
24 5V3Y 5V8 2.7972
25 5EJL C2E 2.82258
26 1RYD GLC 2.84238
27 1F9V ADP 2.88184
28 4DYO SD4 2.8866
29 2VL1 GLY GLY 2.95359
30 4V3I ASP LEU THR ARG PRO 3.11284
31 5LUN OGA 3.125
32 5W3Y ACO 3.125
33 4K55 H6P 3.22581
34 4YRI 4JH 3.28947
35 5VAD PRO 3.29457
36 5TVA COA 3.33333
37 5VKM GAL SIA 3.39506
38 2G30 ALA ALA PHE 3.48837
39 4X7G NAP 3.58566
40 4HWT 1B2 3.63196
41 3SAO DBH 3.75
42 5OF1 SAL 3.80952
43 3CM2 X23 3.84615
44 5MUA GAL 3.84615
45 5F90 GLA GAL 3.84615
46 2HRL SIA GAL SIA BGC NGA CEQ 3.93701
47 2IVD ACJ 3.9749
48 5MRH Q9Z 4.02299
49 3B6C SDN 4.2735
50 5WHT SIA 4.34783
51 4PYA 2X3 4.34783
52 5WHT SIA GAL 4.34783
53 5ENZ UDP 4.41558
54 1Z42 FMN 4.43787
55 5EO8 TFU 4.50161
56 1IA7 BGC BGC 4.53515
57 3AJ6 NGA 4.54545
58 5J75 6GQ 4.54545
59 1J78 VDY 4.58515
60 3E3U NVC 5.07614
61 3GUZ PAF 5.11364
62 2AJH MET 5.14286
63 3RF4 FUN 5.17241
64 1NJJ GET 5.17647
65 1OFL NGK GCD 5.1975
66 3K56 IS3 5.26316
67 3LF0 ATP 5.26316
68 1GQ2 OXL 5.33333
69 4H2D FMN 5.45455
70 2FR6 CTN 5.47945
71 5OQW A4E 5.51181
72 1I1E DM2 5.71429
73 6EK3 OUL 5.88235
74 1PDZ PGA 5.99078
75 3NBC LAT 6.08108
76 3WH2 FLC 6.12245
77 5C83 4YN 6.36364
78 3QRC SCR 6.36943
79 4KCT FDP 6.41283
80 2IU8 PLM 6.41711
81 4ZGR NGA GAL 6.47773
82 2POC UD1 6.53951
83 1F6D UDP 6.91489
84 2PYY GLU 7.01754
85 2VSL MAA LYS PRO PHE 7.29167
86 1DTL BEP 7.45342
87 1C5C TK4 7.47664
88 5KY9 GDP 7.5
89 5HTL C2E 7.58621
90 3UW5 MAA CHG PRO 0DQ 7.75862
91 5I8F ML1 7.87879
92 3JQ3 ADP 7.9235
93 4RT1 C2E 8.03571
94 3DUR KDO 8.03571
95 5F6U 5VK 8.28025
96 2RDE C2E 8.36653
97 5OM2 DXT 8.67209
98 4UXU MLK 9.63303
99 5XLY C2E 9.96441
100 5Y4R C2E 10.2041
101 3NZ1 3NY 10.3448
102 4CQK PIO 10.6383
103 2ZQO NGA 11.5385
104 3AB4 LYS 12.3596
105 4JLS 3ZE 16.4474
106 2RIO ADP 17.0507
107 3TW1 AHN 18.9873
108 1V3S ATP 19.8276
109 1PTR PRB 20
110 5FII PHE 23.5294
111 5NIU 8YZ 25.7812
112 5TVF CGQ 31.7647
Pocket No.: 15; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 15) in the query (biounit: 4z87.bio2) has 42 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 16; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 16) in the query (biounit: 4z87.bio2) has 42 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 17; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 17) in the query (biounit: 4z87.bio2) has 42 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 18; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 18) in the query (biounit: 4z87.bio2) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 19; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 19) in the query (biounit: 4z87.bio2) has 35 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 20; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: 44
This union binding pocket(no: 20) in the query (biounit: 4z87.bio2) has 39 residues
No: Leader PDB Ligand Sequence Similarity
1 3KJS DQ1 1.15163
2 3KJS NAP 1.15163
3 1GPE FAD 1.71429
4 6EZ6 C5Z 1.90476
5 5WPJ NDP 2.11268
6 4L2I NAD 2.28137
7 4L2I FAD 2.28137
8 3QVP FAD 2.47619
9 5TPR NAD 2.7027
10 6EQS BV8 2.90909
11 5NM7 GLY 3.00752
12 3D91 REM 3.22581
13 5AB0 2X0 7GA LYS HIS HIS ALA PHE SER PHE LYN 3.2381
14 4AR8 IP8 GLY PRO ALA 3.29949
15 4Z3X MTE 3.91061
16 4Z3X 4KX 3.91061
17 4C5N ACP 3.98551
18 1QM5 GLC GLC GLC PO4 SGC GLC 4
19 3G5S FAD 4.06321
20 4ZW3 4S9 4.38095
21 4DR9 BB2 4.6875
22 6GNA FAD 4.86111
23 6C1S EFV 4.95238
24 1H74 ADP 5.06757
25 3C2O NTM 5.10204
26 3O2Q PRO THR SEP PRO SER TYR 5.60748
27 1XAJ CRB 5.64972
28 5BJX NAD 5.71429
29 5ECS GSH 5.8296
30 5YU3 NAD 6.10465
31 5YU3 PRO 6.10465
32 3FUR Z12 6.25
33 3CQD ATP 7.76699
34 4D57 ARG AMP 7.80952
35 2J83 BAT 8.01527
36 1VBO MAN 8.05369
37 1MO9 KPC 8.2218
38 3AB1 FAD 8.33333
39 5LWY OLB 9.34579
40 4XXH T6P 9.41177
41 3RG9 WRA 9.58333
42 3RG9 NDP 9.58333
43 1G27 BB1 11.9048
44 1I7M PUT 11.9403
Pocket No.: 21; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 21) in the query (biounit: 4z87.bio2) has 69 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 22; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 22) in the query (biounit: 4z87.bio2) has 39 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 23; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 23) in the query (biounit: 4z87.bio2) has 39 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 24; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: 101
This union binding pocket(no: 24) in the query (biounit: 4z87.bio1) has 39 residues
No: Leader PDB Ligand Sequence Similarity
1 6E1Q CFA 0.952381
2 4A59 AMP 1.33333
3 5KUT GDP 1.5873
4 1Q19 SSC 1.59046
5 1P7T PYR 2.09524
6 4U44 3D9 2.10843
7 5WPJ NDP 2.11268
8 3CQ5 PMP 2.16802
9 4DCT GDP 2.19298
10 3G3N TC8 2.20126
11 4R98 GNH 2.21402
12 3A6T 8OG 2.32558
13 5YLF BGC 2.39521
14 4K38 SAM 2.43243
15 4U00 ADP 2.45902
16 2ZZV LAC 2.49307
17 1V59 NAD 2.51046
18 1WRA PC 2.5974
19 1M2W NAD 2.63692
20 1ZDQ MSM 2.67857
21 5WS9 ATP 2.73684
22 4LOC BTN 2.85714
23 2HT6 GDP 2.87356
24 5C9P FUC 2.88714
25 5T96 79J 2.92398
26 3U6K GDP 3.04762
27 3EPO MP5 3.04762
28 1GOJ ADP 3.09859
29 2X61 CH 3.10078
30 2AWN ADP 3.14961
31 2IYL GDP 3.16901
32 4EYG VNL 3.26087
33 3RK0 AMP 3.37553
34 1OXV ANP 3.39943
35 3HGM ATP 3.40136
36 2EUG URA 3.49345
37 4YS0 ADP 3.51942
38 1A4R GNH 3.66492
39 5TQZ GLC 4
40 3GFS FMN 4.02299
41 5H2U 1N1 4.11985
42 3Q85 GNP 4.14201
43 5MZN ADP 4.19048
44 1KC7 PPR 4.19048
45 4WOH 4NP 4.21687
46 3ZZH NLG 4.23453
47 2GWH PCI 4.36242
48 5U83 ZN8 4.71698
49 1J3R 6PG 4.73684
50 6CLV 6MB 4.811
51 1O5Q PYR 5.2459
52 4K91 SIN 5.49133
53 1GZF NIR 5.6872
54 1UA4 GLC 5.71429
55 1UA4 BGC 5.71429
56 5MB4 NAG 5.73566
57 1OKE BOG 5.83756
58 5KTI TRE 6X6 6.04027
59 1CZA G6P 6.09524
60 4MJ0 SIA SIA 6.18182
61 4NSQ COA 6.31579
62 3G89 SAM 6.4257
63 5K4G ASP 6.66667
64 5E58 CPZ 6.69371
65 3JU6 ARG 6.75676
66 3JWH SAH 6.91244
67 5N6N SUC 7.08333
68 4DFU QUE 7.14286
69 5EQ0 5R0 PHE ALA LEU ELY 5R5 7.27273
70 3LXR GDP 7.56757
71 5ODQ 9SB 7.69231
72 2XRH NIO 8
73 3UIE ANP 8
74 1FQJ ALF 8.16327
75 2VWT PYR 8.2397
76 1Z0F GDP 8.37989
77 1V6A TRE 8.43373
78 4YAC NAI 8.75421
79 1VG0 GER 9.17874
80 4HE2 AMP 9.46746
81 1BW9 PPY 9.83146
82 1B4B ARG 9.85915
83 1MID LAP 9.89011
84 3RET SAL 9.90099
85 3RET PYR 9.90099
86 1YRB GDP 9.92366
87 1CS4 GSP 10.2222
88 2O66 FLC 10.3704
89 2VNO GAL GAL FUC 10.5556
90 5HJQ I3P 10.6383
91 2NGR GDP 11.1111
92 2OI2 DP6 11.3014
93 1RL4 BRR 11.7021
94 3UKR CKH 11.9205
95 3AB4 THR 12.3596
96 3HRD NIO 12.5
97 4FMJ SIA GAL 12.8028
98 2PHW MAN MAN MAN BMA MAN MAN MAN 15.4762
99 2PHU MAN MAN MAN BMA MAN 15.4762
100 5IFS ADP 24.8945
101 5TVF CGQ 31.7647
Pocket No.: 25; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 25) in the query (biounit: 4z87.bio1) has 39 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 26; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 26) in the query (biounit: 4z87.bio1) has 39 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 27; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 27) in the query (biounit: 4z87.bio1) has 39 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 28; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: 48
This union binding pocket(no: 28) in the query (biounit: 4z87.bio1) has 62 residues
No: Leader PDB Ligand Sequence Similarity
1 2FDW D3G 1.47059
2 3NB0 G6P 1.52381
3 2HHP FLC 1.71429
4 5FPE 3TR 1.80879
5 2GMH UQ5 1.90476
6 6BMS POV 2.05279
7 5DHU 5A8 2.20588
8 4DXJ 0M9 2.76243
9 4DXD 9PC 2.77778
10 1QDS PGA 2.78884
11 2O1V ADP 3.04762
12 2NXE SAM 3.14961
13 5N5U 7N8 3.18471
14 4ZGM 32M 3.27869
15 4K10 NI9 3.8674
16 2VWA PTY 3.9604
17 1NU4 MLA 4.12371
18 4QAC KK3 4.14747
19 1QKQ MAN 4.22535
20 1E4I NFG 4.25056
21 4WCX MET 4.58333
22 2BHW NEX 4.74138
23 6CB2 OLC 4.77816
24 4G86 BNT 4.92958
25 3S2Y FMN 5.02513
26 4NS0 PIO 5.26316
27 6E0D XXX 5.53191
28 3QXV MTX 5.55556
29 3CTL S6P 5.62771
30 2HFP NSI 6.02837
31 4NSQ COA 6.31579
32 3G5N PB2 6.72269
33 4WN5 MVC 7.82609
34 5LX9 OLB 8.46906
35 1TV5 N8E 8.80361
36 2WOR 2AN 9
37 5X2N ALA 9.77778
38 1LNX URI 9.87654
39 5L83 ASP TRP GLU ILE VAL 10.7143
40 3TAY MN0 12.2699
41 5O3Q CMP 13.3333
42 2Y69 CHD 17.5
43 2WLG SOP 20.9302
44 5Z84 CHD 23.913
45 5ZCO CHD 23.913
46 5W97 CHD 23.913
47 3GJ4 GDP 24.2424
48 5MWE TCE 39.5062
Pocket No.: 29; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 29) in the query (biounit: 4z87.bio1) has 62 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 30; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 30) in the query (biounit: 4z87.bio1) has 62 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 31; Query (leader) PDB : 4Z87; Ligand: GDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 31) in the query (biounit: 4z87.bio1) has 62 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 32; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: 62
This union binding pocket(no: 32) in the query (biounit: 4z87.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
1 3IWD M2T None
2 3CV2 OXL 1.14286
3 4JP3 CIT 1.25523
4 1EWK GLU 1.42857
5 2EFJ 37T 1.5625
6 1H65 GDP 1.85185
7 2RCN GDP 2.23464
8 1KZL CRM 2.40385
9 1OFZ FUL 2.5641
10 1OFZ FUC 2.5641
11 4CSD MFU 2.57353
12 1WD4 AHR 2.6971
13 6HKE LMR 2.83019
14 4LOC OXM 2.85714
15 5DH3 5BS 2.85714
16 3I27 SID 2.86458
17 1KAE NAD 2.99539
18 4E70 N7I 3.09278
19 4JIQ 1L5 3.18302
20 4JIQ FMN 3.18302
21 3QDW NDG 3.4965
22 4YJI TYL 3.63636
23 3EFS ATP 3.86266
24 3QPB URA 3.90071
25 2PZE ATP 3.93013
26 4BGB ADP 4
27 1A99 PUT 4.06977
28 2J8R MSL 4.65116
29 3ENV ABF 4.68085
30 1Y8O ADP 4.6875
31 3GJB AKG 4.70219
32 1DKU AP2 4.73186
33 1CX9 NHP 4.78589
34 2D2F ADP 4.8
35 4G6I RS3 5.2381
36 3WKX FUB 5.33333
37 3E5P PPI 5.39084
38 4DKX GDP 5.55556
39 4WQQ MAN 5.67376
40 4CP8 MLI 5.71429
41 5MB4 NDG 5.73566
42 2WW4 ADP 6.00707
43 3VPH FBP 6.12903
44 4UBS DIF 6.36132
45 3TK1 GDP 6.36364
46 1RYH GNP 6.40394
47 6F7X MFU 6.66667
48 3WCS MAN NAG 6.69291
49 3GXZ NAG NAG BMA MAN MAN MAN MAN MAN MAN MAN 6.93069
50 1PJS SAH 7.22101
51 3TD3 GLY 7.31707
52 5AZC PGT 7.33333
53 4Q9N 0WE 7.38255
54 5MEX PAP 7.45342
55 2UYN 2KT 7.75194
56 3Q72 GNP 7.83133
57 3QMN A3P 8.52713
58 4JX1 CAH 9.73451
59 1IR1 CAP 13.0081
60 1YOA FMN 17.6101
61 2V7Q ADP 21.2329
62 1OFH ADP 24.1379
Pocket No.: 33; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 33) in the query (biounit: 4z87.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 34; Query (leader) PDB : 4Z87; Ligand: 5GP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 34) in the query (biounit: 4z87.bio1) has 38 residues
No: Leader PDB Ligand