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Receptor
PDB id Resolution Class Description Source Keywords
4ZTD 2.2 Å NON-ENZYME: IMMUNE CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH A TRAIP PEPT HOMO SAPIENS PCNA TRAIP COMPLEX REPLICATION
Ref.: TRAIP IS A PCNA-BINDING UBIQUITIN LIGASE THAT PROTE GENOME STABILITY AFTER REPLICATION STRESS. J.CELL BIOL. V. 212 63 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ALA GLY ALA GLY ALA F:461;
Valid;
Atoms found LESS than expected: % Diff = 0;
submit data
330.365 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4ZTD 2.2 Å NON-ENZYME: IMMUNE CRYSTAL STRUCTURE OF HUMAN PCNA IN COMPLEX WITH A TRAIP PEPT HOMO SAPIENS PCNA TRAIP COMPLEX REPLICATION
Ref.: TRAIP IS A PCNA-BINDING UBIQUITIN LIGASE THAT PROTE GENOME STABILITY AFTER REPLICATION STRESS. J.CELL BIOL. V. 212 63 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 208 families.
1 4ZTD - ALA GLY ALA GLY ALA n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 62 families.
1 4ZTD - ALA GLY ALA GLY ALA n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 42 families.
1 4ZTD - ALA GLY ALA GLY ALA n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ALA GLY ALA GLY ALA; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 ALA GLY ALA GLY ALA 1 1
2 ALA GLY ALA ALA 0.729167 1
3 ALA GLY GLY ALA ALA ALA ALA ALA 0.586207 0.970588
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4ZTD; Ligand: ALA GLY ALA GLY ALA; Similar sites found with APoc: 180
This union binding pocket(no: 1) in the query (biounit: 4ztd.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 4K55 H6P None
2 1F5F DHT None
3 1KDK DHT None
4 3ZO7 K6H None
5 2II3 CAO 1.18577
6 6EWZ APC 1.26582
7 5OX6 A1Z 1.5873
8 2WLG SOP 1.86047
9 4NS3 NAD 1.97628
10 3AR5 TM1 1.97628
11 12AS AMP 1.97628
12 1M15 ADP 1.97628
13 1M15 ARG 1.97628
14 4YWV SSN 1.97628
15 5NV8 TRH 1.97628
16 5X4Q 7Z6 2.12766
17 2RCU BUJ 2.37154
18 2QIA U20 2.37154
19 3VZ3 SSN 2.37154
20 3VZ3 NAP 2.37154
21 2ZTG A5A 2.37154
22 2BJU IH4 2.37154
23 3QXV MTX 2.38095
24 3VBK COA 2.43902
25 5SYN 71T 2.5974
26 3HXU A5A 2.7668
27 3E9I XAH 2.7668
28 5VFC 9BA 2.7668
29 4CLI 5P8 2.7668
30 4N70 2HX 2.7668
31 4L9I 8PR 2.7668
32 3PP0 03Q 2.7668
33 1ZXM ANP 2.7668
34 1W96 S1A 2.7668
35 2E5A LAQ 2.7668
36 3IWJ NAD 2.7668
37 5UWA 8ND 2.95567
38 5W4W 9WG 3.02115
39 4KBA 1QM 3.02115
40 4YBN FAD 3.125
41 4DXD 9PC 3.16206
42 2GVJ DGB 3.16206
43 5XDT ZI7 3.16206
44 2ART LPA AMP 3.16206
45 4L3L 5FI 3.16206
46 5NII FAD 3.16206
47 4BFM ANP 3.16206
48 2IMP NAI 3.16206
49 5N5S NAP 3.16206
50 4OE4 NAD 3.16206
51 5A89 ADP 3.20513
52 5A89 FMN 3.20513
53 5N1Z 8GQ 3.25203
54 3CBC DBS 3.53535
55 3REU ATP 3.55731
56 5KD6 6C7 3.55731
57 5HV7 RBL 3.55731
58 1VA6 ADP 3.55731
59 2Y6Q I7T 3.55731
60 5DBX ANP 3.55731
61 4I9B NAD 3.55731
62 4IEN GDP 3.68098
63 2ZMF CMP 3.7037
64 5IXH OTP 3.72671
65 4XMF HSM 3.80435
66 3FW4 CAQ 3.93258
67 1G51 AMO 3.95257
68 4HWT 1B2 3.95257
69 3ZNN FAD 3.95257
70 3ZNN 4WL 3.95257
71 4I3V NAD 3.95257
72 2Y5D NAP 3.95257
73 5C5H 4YB 3.95257
74 3G1Z AMP 3.95257
75 5KF6 NAD 3.95257
76 1SBR VIB 4
77 4ELG 52I 4.21687
78 4ELG 52J 4.21687
79 6CC0 EWM 4.21941
80 4H2W 5GP 4.34783
81 4H2W AMP 4.34783
82 3MF2 AMP 4.34783
83 4WOE ADP 4.34783
84 1WLE SRP 4.34783
85 5V59 8X1 4.34783
86 5HES 032 4.34783
87 4B2Z P5S 4.34783
88 1JXZ BCA 4.34783
89 1NZY BCA 4.34783
90 5D9G GLU ASN LEU TYR PHE GLN 4.47154
91 5TUF FAD 4.74308
92 1E1O LYS 4.74308
93 3VRY B43 4.74308
94 2OJW ADP 4.74308
95 5N2D 8J8 4.86111
96 1LSH PLD 5.01567
97 3E85 BSU 5.06329
98 3NEM AMO 5.13834
99 1QD1 FON 5.13834
100 3NEM ATP 5.13834
101 1T7Q COA 5.13834
102 1T7Q 152 5.13834
103 4WVO 3UZ 5.13834
104 1RM6 FAD 5.13834
105 4EI7 GDP 5.13834
106 3BJU ATP 5.13834
107 1WD4 AHR 5.13834
108 4H2X G5A 5.20231
109 1Y7P RIP 5.38117
110 4NG2 OHN 5.43478
111 5NIU 8YZ 5.46875
112 2VVL FAD 5.5336
113 5XLY C2E 5.5336
114 4RD0 GDP 5.5336
115 3A5Y KAA 5.5336
116 2YAB AMP 5.5336
117 4Y24 TD2 5.84416
118 6D6L FY4 5.88235
119 3I3X U22 5.92885
120 5TV6 PML 6.25
121 3A5Z KAA 6.28272
122 3ZJX BOG 6.32411
123 4HWS 1B3 6.32411
124 3G6K POP 6.32411
125 3G6K FAD 6.32411
126 1DZK PRZ 6.36943
127 5O3Q CMP 6.66667
128 5VL2 9EG 6.81818
129 1KRR ACO 6.89655
130 3A7R LAQ 7.11462
131 1QZR ANP 7.11462
132 4AAW R84 7.11462
133 1X54 4AD 7.50988
134 5AYT L6Y 7.50988
135 4RYV ZEA 7.74194
136 3OV6 MK0 7.80856
137 3L9R L9Q 7.90514
138 3JZ4 NAP 7.90514
139 5N2F 8HW 8.06452
140 3SAO DBH 8.125
141 4QAC KK3 8.29493
142 6B5G NAD 8.3004
143 6B5G CQY 8.3004
144 4RF7 ARG 8.3004
145 5KJW 53C 8.3004
146 5DQ8 FLF 8.33333
147 3TCT 3MI 8.66142
148 5G48 1FL 8.69565
149 3QSB 743 8.69565
150 1O9J NAD 8.69565
151 6GNO XDI 8.88889
152 5VM0 9EG 9.375
153 3TWD GOB 9.45946
154 4Y30 SAH 9.48617
155 4Y30 49L 9.48617
156 2J3M PRI 9.48617
157 2J3M ATP 9.48617
158 5OMY 9YE 9.48617
159 2AG4 LP3 9.7561
160 2AG4 OLA 9.7561
161 4TSZ ACE GLN ALC ASP LEU ZCL 9.88142
162 3MB5 SAM 9.88142
163 2BJK NAD 10.2767
164 5J75 6GQ 10.6719
165 3ORK AGS 10.6719
166 5XCS TYR PRO TYR ASP VAL PRO ASP TYR ALA 10.8434
167 1KGI T4A 11.0236
168 2XGT NSS 13.0435
169 3H0L ADP 13.8298
170 2PT9 2MH 16.2055
171 4H2V AMP 16.3636
172 5D48 L96 16.4474
173 3ZXR IQ1 16.6008
174 3ZXR P3S 16.6008
175 4BG4 ADP 16.6008
176 1Y63 ADP 16.8478
177 5DEY 59T 17.3913
178 1TT8 PHB 25.6098
179 3EM0 CHD 33.3333
180 4YEE 4CQ 41.6667
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