Receptor
PDB id Resolution Class Description Source Keywords
5AJP 1.65 Å EC: 2.4.1.41 CRYSTAL STRUCTURE OF THE ACTIVE FORM OF GALNAC-T2 IN COMPLEX WITH UDP AND THE GLYCOPEPTIDE MUC5AC-13 HOMO SAPIENS TRANSFERASE GALNAC-T2 AFM SAXS LECTIN DOMAIN COARSE-GRAMODEL GLYCOPEPTIDES INACTIVE FORM ACTIVE FORM COMPACT FEXTENDED FORM
Ref.: DYNAMIC INTERPLAY BETWEEN CATALYTIC AND LECTIN DOMA GALNAC-TRANSFERASES MODULATES PROTEIN O-GLYCOSYLATI NAT.COMMUN. V. 6 6937 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 A:1583;
A:1582;
A:1584;
A:1580;
A:1589;
A:1574;
A:1576;
A:1590;
A:1585;
A:1591;
A:1586;
A:1581;
A:1573;
A:1587;
A:1588;
A:1577;
A:1571;
A:1592;
A:1575;
A:1578;
A:1579;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
MN A:1572;
Part of Protein;
none;
submit data
54.938 Mn [Mn+2...
UDP A:1570;
Valid;
none;
submit data
404.161 C9 H14 N2 O12 P2 C1=CN...
A2G B:17;
Invalid;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5AJP 1.65 Å EC: 2.4.1.41 CRYSTAL STRUCTURE OF THE ACTIVE FORM OF GALNAC-T2 IN COMPLEX WITH UDP AND THE GLYCOPEPTIDE MUC5AC-13 HOMO SAPIENS TRANSFERASE GALNAC-T2 AFM SAXS LECTIN DOMAIN COARSE-GRAMODEL GLYCOPEPTIDES INACTIVE FORM ACTIVE FORM COMPACT FEXTENDED FORM
Ref.: DYNAMIC INTERPLAY BETWEEN CATALYTIC AND LECTIN DOMA GALNAC-TRANSFERASES MODULATES PROTEIN O-GLYCOSYLATI NAT.COMMUN. V. 6 6937 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5AJP - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5AJP - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5AJP - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: UDP; Similar ligands found: 122
No: Ligand ECFP6 Tc MDL keys Tc
1 UDP 1 1
2 UTP 0.892308 1
3 U5F 0.878788 1
4 UNP 0.8 0.970149
5 U5P 0.78125 0.984615
6 U 0.78125 0.984615
7 UPU 0.72973 0.940298
8 2KH 0.722222 0.970149
9 44P 0.720588 0.955882
10 GUD 0.717949 0.941176
11 UPG 0.717949 0.941176
12 URM 0.717949 0.927536
13 UFM 0.717949 0.941176
14 GDU 0.717949 0.941176
15 660 0.717949 0.927536
16 UDP UDP 0.714286 0.939394
17 UPP 0.705128 0.941176
18 UDH 0.705128 0.864865
19 UFG 0.691358 0.888889
20 UPF 0.691358 0.888889
21 U2F 0.691358 0.888889
22 UAD 0.670732 0.941176
23 UDX 0.670732 0.941176
24 3UC 0.658824 0.888889
25 USQ 0.654762 0.820513
26 UGA 0.654762 0.955224
27 UGB 0.654762 0.955224
28 G3N 0.647059 0.914286
29 UDM 0.636364 0.914286
30 URI 0.625 0.863636
31 UD2 0.622222 0.927536
32 UD1 0.622222 0.927536
33 Y6W 0.607143 0.888889
34 CDP 0.605263 0.942029
35 HP7 0.591398 0.941176
36 UD7 0.591398 0.927536
37 MJZ 0.585106 0.914286
38 IUG 0.583333 0.810127
39 F5G 0.578947 0.927536
40 12V 0.578947 0.901408
41 UD4 0.578947 0.914286
42 F5P 0.578947 0.914286
43 HWU 0.578947 0.901408
44 CJB 0.573529 0.820895
45 UDZ 0.571429 0.853333
46 DUD 0.571429 0.913043
47 UP5 0.571429 0.853333
48 U U 0.563218 0.955224
49 EPZ 0.56 0.914286
50 5GW 0.559524 0.942029
51 EPU 0.554455 0.901408
52 EEB 0.554455 0.901408
53 UA3 0.547945 0.939394
54 U3P 0.547945 0.939394
55 4TC 0.544554 0.831169
56 HF4 0.54321 0.942029
57 CTP 0.54321 0.942029
58 CSQ 0.531915 0.851351
59 CSV 0.531915 0.851351
60 DUT 0.52439 0.913043
61 4GW 0.516484 0.915493
62 UMA 0.513761 0.914286
63 U4S 0.513158 0.753425
64 U2P 0.506667 0.954545
65 U2S 0.5 0.767123
66 U3S 0.5 0.753425
67 PUP 0.48913 0.913043
68 U22 0.486957 0.790123
69 U20 0.486957 0.810127
70 U21 0.486957 0.810127
71 DKX 0.486486 0.746479
72 0RC 0.482759 0.864865
73 U1S 0.482759 0.75
74 A U 0.481132 0.805195
75 2QR 0.478632 0.822785
76 5FU 0.474359 0.914286
77 LSU 0.472527 0.738095
78 G U 0.472222 0.7875
79 8OD 0.47191 0.851351
80 C5G 0.468085 0.888889
81 7XL 0.465909 0.888889
82 UMF 0.461538 0.857143
83 U U U U 0.461538 0.940298
84 G8D 0.460674 0.855263
85 2TM 0.45977 0.902778
86 UTP U U U 0.456522 0.895522
87 YSU 0.453608 0.746988
88 2TU 0.452055 0.774648
89 4RA 0.451613 0.855263
90 C2G 0.450549 0.901408
91 UMP 0.45 0.898551
92 CAR 0.45 0.927536
93 C 0.45 0.927536
94 DU 0.45 0.898551
95 C5P 0.45 0.927536
96 UAG 0.448 0.864865
97 CDC 0.446809 0.777778
98 5BU 0.444444 0.914286
99 UD0 0.444444 0.844156
100 UC5 0.440476 0.9
101 N3E 0.440476 0.733333
102 UUA 0.438356 0.772727
103 DUP 0.431818 0.887324
104 2GW 0.431373 0.901408
105 M7G 0.430108 0.780488
106 CNU 0.428571 0.927536
107 CDM 0.427083 0.842105
108 H6Y 0.425532 0.851351
109 16B 0.421687 0.888889
110 S5P 0.419753 0.915493
111 8GT 0.419355 0.855263
112 CXY 0.418367 0.888889
113 UPA 0.418182 0.842105
114 U2G 0.410714 0.822785
115 U A A U 0.409836 0.842105
116 UML 0.408759 0.810127
117 UP6 0.407407 0.871429
118 M7M 0.40625 0.771084
119 1GW 0.40367 0.864865
120 BMP 0.402439 0.970149
121 APU 0.401786 0.828947
122 PMP UD1 0.401575 0.7875
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5AJP; Ligand: UDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5ajp.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
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