Receptor
PDB id Resolution Class Description Source Keywords
5DEQ 1.95 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL FACTOR ARAR FROM BACTER THETAIOTAOMICRON VPI IN COMPLEX WITH L-ARABINOSE BACTEROIDES THETAIOTAOMICRON (STRAIN A/ DSM 2079 / NCTC 10582 / E50 / VPI-5482) STRUCTURAL GENOMICS PSI-BIOLOGY MIDWEST CENTER FOR STRUCTUGENOMICS MCSG TRANSCRIPTION REGULATOR
Ref.: A NOVEL TRANSCRIPTIONAL REGULATOR OF L-ARABINOSE UT IN HUMAN GUT BACTERIA. NUCLEIC ACIDS RES. V. 43 10546 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FMT B:303;
B:302;
Invalid;
Invalid;
none;
none;
submit data
46.025 C H2 O2 C(=O)...
ARA A:301;
B:301;
Valid;
Valid;
none;
none;
submit data
150.13 C5 H10 O5 C1[C@...
SO4 A:302;
Invalid;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5DEQ 1.95 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF TRANSCRIPTIONAL FACTOR ARAR FROM BACTER THETAIOTAOMICRON VPI IN COMPLEX WITH L-ARABINOSE BACTEROIDES THETAIOTAOMICRON (STRAIN A/ DSM 2079 / NCTC 10582 / E50 / VPI-5482) STRUCTURAL GENOMICS PSI-BIOLOGY MIDWEST CENTER FOR STRUCTUGENOMICS MCSG TRANSCRIPTION REGULATOR
Ref.: A NOVEL TRANSCRIPTIONAL REGULATOR OF L-ARABINOSE UT IN HUMAN GUT BACTERIA. NUCLEIC ACIDS RES. V. 43 10546 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 5DEQ - ARA C5 H10 O5 C1[C@@H]([....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 5DEQ - ARA C5 H10 O5 C1[C@@H]([....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5DEQ - ARA C5 H10 O5 C1[C@@H]([....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ARA; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 RIP 1 1
2 XYS 1 1
3 ARB 1 1
4 HSY 1 1
5 ARA 1 1
6 XYP 1 1
7 LXC 1 1
8 0MK 1 1
9 XYP XYS 0.414634 0.84375
10 BXP 0.414634 0.84375
11 XYS XYP 0.414634 0.84375
12 FU4 0.4 0.896552
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5DEQ; Ligand: ARA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5deq.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5DEQ; Ligand: ARA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5deq.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
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