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Receptor
PDB id Resolution Class Description Source Keywords
5DOZ 2.26 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF JAMJ ENOYL REDUCTASE (NADPH BOUND) LYNGBYA MAJUSCULA ENOYL REDUCTASE POLYKETIDE SYNTHASE NADPH CYCLOPROPANE OXIDOREDUCTASE
Ref.: STRUCTURAL BASIS FOR CYCLOPROPANATION BY A UNIQUE E CARRIER PROTEIN REDUCTASE. STRUCTURE V. 23 2213 2015
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NDP A:502;
C:401;
B:401;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
745.421 C21 H30 N7 O17 P3 c1nc(...
ACT A:501;
Invalid;
none;
submit data
59.044 C2 H3 O2 CC(=O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5DOZ 2.26 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF JAMJ ENOYL REDUCTASE (NADPH BOUND) LYNGBYA MAJUSCULA ENOYL REDUCTASE POLYKETIDE SYNTHASE NADPH CYCLOPROPANE OXIDOREDUCTASE
Ref.: STRUCTURAL BASIS FOR CYCLOPROPANATION BY A UNIQUE E CARRIER PROTEIN REDUCTASE. STRUCTURE V. 23 2213 2015
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5DOZ - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5DOZ - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
2 5DP2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5DOZ - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
2 5DP2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NDP; Similar ligands found: 172
No: Ligand ECFP6 Tc MDL keys Tc
1 NDP 1 1
2 0WD 0.827273 1
3 NAI 0.803738 0.986842
4 NMN AMP PO4 0.794643 0.948052
5 NPW 0.692308 0.962025
6 NZQ 0.686441 0.987013
7 1DG 0.68 1
8 DG1 0.68 1
9 A2R 0.650943 0.909091
10 A22 0.64486 0.934211
11 TXP 0.644628 0.924051
12 ATR 0.640777 0.894737
13 NA7 0.636364 0.886076
14 XNP 0.620968 0.949367
15 AP0 0.598361 0.948718
16 A2P 0.598039 0.881579
17 NJP 0.574803 0.923077
18 25L 0.550847 0.934211
19 ODP 0.550388 0.936709
20 NAX 0.544 0.949367
21 25A 0.53913 0.921053
22 80F 0.537879 0.914634
23 2AM 0.529412 0.87013
24 6V0 0.519685 0.974026
25 NAP 0.514493 0.922078
26 7L1 0.507143 0.763441
27 EAD 0.507143 0.949367
28 A2D 0.504673 0.921053
29 TXE 0.503876 0.935897
30 NA0 0.496454 0.910256
31 TXD 0.496124 0.911392
32 SAP 0.495575 0.875
33 AGS 0.495575 0.875
34 P1H 0.493056 0.925926
35 CO7 0.489796 0.791209
36 TAP 0.489362 0.864198
37 PAP 0.482456 0.907895
38 BA3 0.481818 0.921053
39 NAJ PZO 0.478261 0.924051
40 ATP 0.477876 0.921053
41 HEJ 0.477876 0.921053
42 B4P 0.477477 0.921053
43 AP5 0.477477 0.921053
44 ADP 0.477477 0.921053
45 OAD 0.47541 0.897436
46 AR6 0.473684 0.896104
47 AQP 0.473684 0.921053
48 5FA 0.473684 0.921053
49 APR 0.473684 0.896104
50 AN2 0.473214 0.909091
51 3OD 0.467742 0.897436
52 50T 0.464912 0.884615
53 NAJ PYZ 0.464789 0.879518
54 9X8 0.463415 0.851852
55 PO4 PO4 A A A A PO4 0.463415 0.857143
56 V3L 0.461538 0.896104
57 2A5 0.46087 0.85
58 AT4 0.460177 0.886076
59 A1R 0.459016 0.841463
60 4AD 0.459016 0.875
61 ADQ 0.459016 0.897436
62 OVE 0.458716 0.8375
63 OMR 0.458647 0.813953
64 PPS 0.457627 0.811765
65 AD9 0.456897 0.897436
66 CA0 0.45614 0.897436
67 M33 0.45614 0.884615
68 ADJ 0.455882 0.879518
69 A3P 0.455357 0.894737
70 ACP 0.452174 0.897436
71 ENP 0.451613 0.85
72 UP5 0.451128 0.948052
73 SRP 0.45 0.8625
74 ANP 0.449153 0.897436
75 ACQ 0.449153 0.897436
76 PRX 0.448276 0.82716
77 A3R 0.447154 0.841463
78 5AL 0.445378 0.884615
79 7D4 0.443478 0.8375
80 ADX 0.443478 0.811765
81 6YZ 0.438017 0.897436
82 A 0.436364 0.894737
83 AMP 0.436364 0.894737
84 4TC 0.433824 0.924051
85 7D3 0.433628 0.8375
86 DCA 0.433566 0.788889
87 ETB 0.433566 0.797753
88 BIS 0.433071 0.864198
89 1ZZ 0.433071 0.802326
90 00A 0.432 0.864198
91 ATF 0.429752 0.886076
92 DQV 0.428571 0.934211
93 0T1 0.427586 0.788889
94 5SV 0.427419 0.788235
95 8QN 0.427419 0.884615
96 3AM 0.427273 0.857143
97 N01 0.426573 0.884615
98 PR8 0.425197 0.811765
99 LAD 0.425197 0.821429
100 WAQ 0.425197 0.841463
101 DTP 0.425 0.8375
102 AMO 0.424 0.886076
103 PAJ 0.424 0.843373
104 APC 0.423729 0.886076
105 UPA 0.423358 0.935897
106 48N 0.422222 0.853659
107 FYA 0.421875 0.860759
108 PTJ 0.421875 0.853659
109 CNA 0.421429 0.910256
110 PUA 0.42069 0.9125
111 DND 0.419118 0.910256
112 NXX 0.419118 0.910256
113 AV2 0.418033 0.848101
114 COA 0.417808 0.788889
115 3UK 0.417323 0.897436
116 OOB 0.416 0.909091
117 IVC 0.415584 0.78022
118 DAT 0.415254 0.8375
119 NDO 0.414966 0.897436
120 139 0.414286 0.901235
121 B5V 0.414062 0.886076
122 T99 0.413223 0.886076
123 TAT 0.413223 0.886076
124 3AT 0.413223 0.896104
125 YLB 0.413043 0.784091
126 62F 0.4125 0.823529
127 ABM 0.412281 0.848101
128 B5M 0.412214 0.875
129 YAP 0.412214 0.875
130 YLP 0.411765 0.784091
131 NB8 0.410853 0.853659
132 ME8 0.410853 0.802326
133 SON 0.410256 0.886076
134 DLL 0.409449 0.909091
135 AHX 0.409449 0.853659
136 CAO 0.409396 0.763441
137 30N 0.409396 0.72449
138 AMX 0.409396 0.797753
139 COS 0.409396 0.771739
140 7D5 0.409091 0.8125
141 4UW 0.408759 0.9125
142 F2R 0.408451 0.825581
143 APX 0.407692 0.841463
144 SRA 0.40708 0.85
145 CMX 0.406667 0.788889
146 SCO 0.406667 0.788889
147 TYM 0.405797 0.886076
148 COD 0.405594 0.777778
149 CA6 0.405229 0.70297
150 OXK 0.405229 0.771739
151 AP2 0.405172 0.886076
152 A12 0.405172 0.886076
153 9SN 0.40458 0.853659
154 LAQ 0.404412 0.802326
155 T5A 0.404255 0.914634
156 FAM 0.403974 0.771739
157 ACO 0.403974 0.763441
158 FCX 0.403974 0.763441
159 VO4 ADP 0.403226 0.860759
160 ADP VO4 0.403226 0.860759
161 YLC 0.402878 0.823529
162 1VU 0.402597 0.763441
163 B5Y 0.401515 0.875
164 FA5 0.401515 0.886076
165 HAX 0.401316 0.771739
166 AR6 AR6 0.4 0.871795
167 CAJ 0.4 0.771739
168 AFH 0.4 0.843373
169 APU 0.4 0.923077
170 A U 0.4 0.898734
171 TXA 0.4 0.886076
172 4UU 0.4 0.948052
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5DOZ; Ligand: NDP; Similar sites found with APoc: 405
This union binding pocket(no: 1) in the query (biounit: 5doz.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL GLC NBU None
2 1FP2 SAH 0.887574
3 2ZAT NAP 1.15385
4 3H9E NAD 1.18343
5 1DSS NAD 1.2012
6 5GZ6 NDP 1.22699
7 5GZ6 7C3 1.22699
8 3CH6 NAP 1.3986
9 3CH6 311 1.3986
10 3A06 NDP 1.47929
11 4N4J HG1 1.47929
12 5Z21 NAI 1.47929
13 5ENZ UDP 1.47929
14 1HYH NAD 1.61812
15 4MP8 MLI 1.77515
16 4MP8 NAD 1.77515
17 2O4C NAD 1.77515
18 2VAT COA 1.77515
19 1RPN NDP 1.79104
20 4PLG OXM 1.79641
21 4PLG NAI 1.79641
22 4PLT OXM 1.81269
23 4PLT NAI 1.81269
24 2DTX BMA 1.89394
25 2AG8 NAP 1.90114
26 1E3W NAD 1.91571
27 1GUZ NAD 1.93548
28 1J5P NAD 1.97628
29 1O6Z NAD 1.9802
30 1W73 NAP 1.98676
31 1W8D NAP 1.98676
32 4MLN ODV 2.04082
33 5HV7 RBL 2.07101
34 1L5J TRA 2.07101
35 1WVG APR 2.07101
36 1RKX NAD 2.07101
37 1XL8 152 2.07101
38 4XB2 NDP 2.08955
39 4XB2 HSE 2.08955
40 3CMC NAD 2.09581
41 1CER NAD 2.1148
42 1SOW NAD 2.13415
43 2RH4 EMO 2.16606
44 1OMO NAD 2.17391
45 1DRV A3D 2.1978
46 5X20 NAD 2.24359
47 1GV0 NAD 2.25806
48 1ZEM NAD 2.29008
49 4WOE 3S5 2.36686
50 1Q19 SSC 2.36686
51 3LST SAH 2.36686
52 1BW9 NAD 2.36686
53 1C1X NAD 2.36686
54 2CDU ADP 2.36686
55 4DPL NAP 2.36686
56 2GSD NAD 2.36686
57 1BXG NAD 2.36686
58 2DBZ NAP 2.36686
59 4E5N NAD 2.36686
60 1CT9 AMP 2.36686
61 3SJ7 NDP 2.38095
62 4Z0H NAD 2.39521
63 6A0S NDP 2.40964
64 6A0S HSE 2.40964
65 5F5N NAD 2.42215
66 2Q3M MLA 2.45399
67 4DYG NAG NAG NAG NAG 2.45902
68 4E13 NAD 2.4735
69 4FF8 14S 2.47678
70 1T26 NAI 2.48447
71 1T26 GBD 2.48447
72 2A92 NAI 2.49221
73 4O0L NDP 2.54545
74 1NYT NAP 2.58303
75 4OM8 NAD 2.589
76 1VM6 NAD 2.63158
77 5ZRR 9J3 2.64151
78 5Z2F PDC 2.64151
79 4UP4 GAL NAG 2.66272
80 5ZI2 NAD 2.66272
81 5MB4 NAG 2.66272
82 1BXK NAD 2.66272
83 1EBF NAD 2.66272
84 2NAD NAD 2.66272
85 5IN4 GDP 2.66272
86 5MB4 NDG 2.66272
87 5IN4 6CK 2.66272
88 5ZI2 ADP 2.66272
89 5YU3 NAD 2.66272
90 5YU3 PRO 2.66272
91 5IN4 NAP 2.66272
92 1V8B NAD 2.66272
93 1GZ4 ATP 2.66272
94 4BVA NDP 2.68657
95 4MDH NAD 2.69461
96 5MDH NAD 2.7027
97 9LDB NAD 2.71084
98 9LDT NAD 2.71084
99 1B8U NAD 2.73556
100 5Z75 NAD 2.75229
101 1F06 2NP 2.8125
102 1F06 NDP 2.8125
103 3U4C NDP 2.84698
104 1HYE NAP 2.8754
105 4LZB URA 2.94118
106 5OJL TXP 2.95858
107 3WQQ IB3 2.95858
108 3WQQ NDP 2.95858
109 1SAY PYR 2.95858
110 3ABI NAD 2.95858
111 5W0N UPU 2.95858
112 2DC1 NAD 2.9661
113 4XJ7 ADN 2.99625
114 5GT9 NAP 3.04183
115 5K4W NAI 3.11526
116 2YY7 NAD 3.20513
117 5U5N NAD 3.22581
118 4XQC 13D 3.25444
119 4XQC NAD 3.25444
120 1YS4 NAP 3.25444
121 5ZDK ATP 3.25444
122 2QJT AMP 3.25444
123 1QZZ SAM 3.25444
124 2B5W NAP 3.25444
125 1N7G NDP 3.25444
126 1N7G GDR 3.25444
127 3V1Y NAD 3.2641
128 1AE1 NAP 3.2967
129 5NUF NAD 3.31325
130 5NUE NAD 3.31325
131 6EL3 NAP 3.41207
132 1WP4 NDP 3.46021
133 1Z6Z NAP 3.5461
134 4R5M NAP 3.5503
135 3BAZ NAP 3.5503
136 1MJT ITU 3.5503
137 4R5M 4NO 3.5503
138 5LD5 NAD 3.5503
139 4D3F NAP 3.5503
140 1GR0 NAD 3.5503
141 3VPD CIT 3.55872
142 1CF2 NAP 3.56083
143 2F1K NAP 3.58423
144 3SJK LYS PRO VAL LEU ARG THR ALA 3.68421
145 2BD0 NAP 3.68852
146 1JH7 UVC 3.7037
147 1G4U AF3 3.80435
148 3OND NAD 3.84615
149 3OND ADN 3.84615
150 1XG5 NAP 3.84615
151 3LU1 NAD 3.84615
152 2AF6 FAD 3.87597
153 1UXG FUM 3.8835
154 1UXG NAD 3.8835
155 1J49 NAD 3.9039
156 1GAD NAD 3.93939
157 3HB5 NAP 3.97554
158 2JAH NDP 4.04858
159 2JAP NDP 4.04858
160 2PK3 A2R 4.04984
161 1YQC GLV 4.11765
162 2ZJ1 ARJ 4.14201
163 2ZJ1 NAD 4.14201
164 6F3N ADN 4.14201
165 6F3N NAD 4.14201
166 6F3M NAD 4.14201
167 2Q1W NAD 4.14201
168 1JAY NAP 4.24528
169 6CI9 NAP 4.2471
170 1FK8 NAD 4.28016
171 5N6C NAD 4.33333
172 1TB4 PEJ 4.43787
173 5ZEC NAP 4.43787
174 5EES NAP 4.45344
175 3KB6 NAD 4.49102
176 4CQM NAP 4.5082
177 2NU8 COA 4.51389
178 1LUA NAP 4.52962
179 2YVJ NAI 4.58716
180 3A4V PYR 4.73186
181 3A4V NAD 4.73186
182 5M67 3D1 4.73373
183 1J0X NAD 4.73373
184 5M67 NAD 4.73373
185 5M67 ADE 4.73373
186 1DJN ADP 4.73373
187 3WMX NAD 4.73373
188 1O94 ADP 4.73373
189 1HKU NAD 4.73373
190 1GQ2 NAP 4.73373
191 1WDK NAD 4.73373
192 5AOV NAP 4.7619
193 1VL0 NAI 4.79452
194 1PZG A3D 4.83384
195 5L4L NAP 4.93421
196 1LTH NAD 5.01567
197 1D1T NAD 5.02959
198 3NJ4 NAD 5.02959
199 3NJ4 AFX 5.02959
200 5CAE COA 5.02959
201 3CIF NAD 5.02959
202 3CIF G3H 5.02959
203 3K5I AIR 5.02959
204 5O98 NAP 5.02959
205 2BGM NAJ 5.03597
206 2VT3 ATP 5.11628
207 4RF2 NAP 5.14706
208 6F9Q NAD 5.14706
209 1LDM NAD 5.16717
210 4MTI 2DX 5.21739
211 5UAV NDP 5.2795
212 5JE8 NAD 5.32544
213 1E5Q NDP 5.32544
214 1RM0 NAI 5.32544
215 1RM0 D6P 5.32544
216 4PIV NDP 5.32544
217 5MQ6 NDP 5.32544
218 2JIG PD2 5.35714
219 3UW4 MAA CHG PRO 0DQ 5.43478
220 5KKA 6V0 5.44872
221 5OVK NDP 5.46875
222 2D2I NAP 5.52632
223 5N2I NAP 5.60345
224 2GZ3 NAP 5.6213
225 1PL6 NAD 5.6213
226 2HJR APR 5.6213
227 6H45 QEI 5.6213
228 1PL6 572 5.6213
229 1W6U NAP 5.62914
230 4XZ3 COA 5.65217
231 1EZ4 NAD 5.66038
232 1LSS NAD 5.71429
233 3RKR NAP 5.72519
234 1N5D NDP 5.90278
235 5A1T OXM 5.91716
236 1WPQ NAD 5.91716
237 4G5H NAP 5.91716
238 4G5H UD7 5.91716
239 5A1T NAI 5.91716
240 1X7D NAD 6
241 1X7D ORN 6
242 2JCB ADP 6
243 3SJU NDP 6.09319
244 5Z2L NDP 6.12245
245 1C3V NDP 6.12245
246 5OJI ISN 6.15385
247 5OJI NAP 6.15385
248 3B1F NAD 6.2069
249 2VHW NAI 6.21302
250 1KYZ SAH 6.21302
251 5ZZ6 ADP 6.25
252 5ZZ6 NAD 6.25
253 5L95 AMP 6.25
254 5G4L NDP 6.29371
255 4ZVV GN0 6.3253
256 4ZVV NAD 6.3253
257 5WQP NAP 6.41026
258 3VPH OXM 6.45161
259 3VPH NAD 6.45161
260 2B4R AES 6.50888
261 2B4R NAD 6.50888
262 2AE2 PTO 6.53846
263 2AE2 NAP 6.53846
264 1KYQ NAD 6.56934
265 6CEP NAD 6.58683
266 6CEP OXM 6.58683
267 6AA8 NAD 6.62252
268 3RJ5 NAD 6.69291
269 1XSE NDP 6.77966
270 4KP7 1UQ 6.80473
271 4KP7 NAP 6.80473
272 1SC6 NAD 6.80473
273 5UR0 NAD 6.80473
274 1SB8 NAD 6.80473
275 1SB8 UD2 6.80473
276 1F8G NAD 6.80473
277 5L4S NAP 6.80473
278 5L4S 6KX 6.80473
279 1RM4 NDP 6.82493
280 2F6U CIT 6.83761
281 2HK9 ATR 6.90909
282 2HK9 NAP 6.90909
283 3OID NDP 6.97674
284 3NIP 16D 7.05521
285 2AK3 AMP 7.07965
286 2VYN NAD 7.18563
287 5OCM NAP 7.2165
288 1HDG NAD 7.22892
289 4U00 ADP 7.37705
290 1PR9 NAP 7.37705
291 3D3W NAP 7.37705
292 1NPD NAD 7.39645
293 1VI2 NAD 7.39645
294 4OOE FOM 7.42574
295 4OOE NDP 7.42574
296 2EWM NAD 7.63052
297 4J7U NAP 7.63889
298 4J7U YTZ 7.63889
299 5Z20 NAI 7.69231
300 5MSO NAP 7.69231
301 3O26 NDP 7.71704
302 4JK3 NAD 7.72201
303 1OAA OAA 7.72201
304 4J4H NAI 7.72201
305 1Q7B NAP 7.78689
306 1ONI BEZ 7.97101
307 2JL1 NAP 7.98817
308 6C5B SAH 7.98817
309 1ORR NAD 7.98817
310 3ICT ADP 8.28402
311 3ICS ADP 8.28402
312 3B20 NAD 8.28402
313 3B1J NAD 8.28402
314 2DT5 NAD 8.53081
315 3JQQ A2P 8.5443
316 2C29 NAP 8.60534
317 1P77 ATR 8.82353
318 1O0S NAI 8.87574
319 4TQG NDP 8.97833
320 3CQL NAG 9.0535
321 3CQL NDG 9.0535
322 2V6G NAP 9.1716
323 4NBU NAI 9.2
324 4F4S EFO 9.21053
325 1LDN NAD 9.49367
326 3LL5 IP8 9.63855
327 2Q0L NAP 9.6463
328 1UI0 URA 9.7561
329 3QV1 NAD 9.7561
330 1KOL NAD 9.799
331 5L53 NAP 9.87654
332 1O5I NAD 10.0402
333 5EPO NAP 10.3053
334 3WBF NAP 10.4918
335 3WBF API 10.4918
336 4XYB NDP 10.6509
337 1QB7 ADE 11.4407
338 4YGM URA 11.5385
339 4EUE NAI 11.5385
340 1G0N PHH 11.6608
341 1G0N NDP 11.6608
342 6BII NAP 12.6126
343 2I3G NAP 13.0682
344 2GN4 NDP 13.0814
345 2GN4 UD1 13.0814
346 1GZ6 NAI 13.1661
347 5EYK 5U5 13.5593
348 4ZGS NAD 13.9053
349 5H81 NAP 14.1388
350 1CDO NAD 14.2012
351 1NVT NAP 14.2857
352 3O7W SAM 14.2857
353 1EDO NAP 14.7541
354 4W6Z 8ID 15.0888
355 2CVQ NDP 15.2905
356 1P0F NAP 15.3846
357 5FEU NAP 15.8076
358 1F8F NAD 17.1598
359 5FFF NAP 17.8988
360 2DM6 IMN 18.6186
361 2DM6 NAP 18.6186
362 3WLE NAD 19.0616
363 4GKV NAD 19.2308
364 1YQD NAP 19.2308
365 3TWO NDP 19.5266
366 2EV9 NAP 19.7719
367 2EV9 SKM 19.7719
368 5FI3 NAP 19.8225
369 1U1I NAD 19.8225
370 3TN7 NJP 19.8444
371 5EIN NAP 20.3704
372 2FZW NAD 21.7158
373 1G6H ADP 21.7899
374 4B7X NAP 22.619
375 1JA9 NDP 22.9927
376 1N9G NAP 24.5562
377 4WAS COO 24.5562
378 3B6Z CO7 24.5562
379 4WAS NAP 24.5562
380 1U3U BNF 25.4438
381 1U3U NAD 25.4438
382 1LLU NAD 26.3314
383 2JHF NAD 26.6272
384 2ZB3 NDP 26.9231
385 1KEV NDP 26.9231
386 1YKF NAP 26.9231
387 2ZB4 NAP 27.5148
388 2ZB4 5OP 27.5148
389 1H2B NAJ 27.8107
390 5THQ NDP 29.7794
391 5O9F NAD 31.3609
392 5O9F 9ON 31.3609
393 4RQU NAD 31.9527
394 1R37 NAD 34.3195
395 3JYN NDP 35.6923
396 1YB5 NAP 36.0947
397 3QWB NDP 36.5269
398 4A0S NAP 36.6864
399 3GFB NAD 37.8698
400 1E3I CXF 37.8698
401 2DFV NAD 40.5325
402 4RVU NDP 40.9639
403 4JBI NDP 42.3077
404 4W9N TCL 46.4497
405 2J8Z NAP 48.5207
Pocket No.: 2; Query (leader) PDB : 5DOZ; Ligand: NDP; Similar sites found with APoc: 54
This union binding pocket(no: 2) in the query (biounit: 5doz.bio3) has 31 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL GLC None
2 5FII PHE None
3 3A06 FOM 1.47929
4 1R6D DAU 1.48368
5 1R6D NAD 1.48368
6 4KOA NDP 1.8018
7 4Y9D NAI 1.96721
8 4GNC ASO 2.00669
9 1T3D CYS 2.07612
10 3IT1 TLA 2.36686
11 3I6I NDP 2.66272
12 1VKO NAD 2.66272
13 4RQL SNE 2.95858
14 4D86 ADP 2.95858
15 5HSA FAS 2.95858
16 2GCG NDP 3.0303
17 1XKQ NDP 3.21429
18 2AWN ADP 3.5503
19 1KJ8 GAR 3.5503
20 1OC2 NAD 3.5503
21 1OC2 TDX 3.5503
22 2IU8 UD1 3.5503
23 4TQK NAG 3.84615
24 1U29 I3P 3.87597
25 2ED4 NAD 4.02685
26 5FBK TCR 4.14201
27 5OOH 9ZZ 4.36893
28 5OOH NAP 4.36893
29 3W5J GDP 4.41176
30 1EWK GLU 4.73373
31 1KEW NAD 5.02959
32 3ZJQ NCA 5.12821
33 5UAV TFB 5.2795
34 4LRJ ANP 5.32544
35 5XWV 8H6 5.64516
36 5XWV NDP 5.64516
37 3LN9 FLC 5.7554
38 4JLS 3ZE 5.92105
39 1UWK NAD 6.21302
40 1UWK URO 6.21302
41 5IWQ PLP 6.45161
42 5ZI9 FLC 6.53846
43 4JAL SAH 7.18563
44 4U8P UDP 7.69231
45 4J4H 1J1 7.72201
46 1KNY KAN 7.90514
47 5AYV NAP 8.09062
48 5MLR GRQ 9.1716
49 5MLR NAP 9.1716
50 1A5V Y3 9.49367
51 4YEE 4CQ 10
52 4KWI 1TJ 17.4905
53 4KWI NAP 17.4905
54 2V7Q ADP 17.8082
Pocket No.: 3; Query (leader) PDB : 5DOZ; Ligand: NDP; Similar sites found with APoc: 23
This union binding pocket(no: 3) in the query (biounit: 5doz.bio2) has 31 residues
No: Leader PDB Ligand Sequence Similarity
1 1ZGS XMM 1.47929
2 1Q0H FOM 2.36686
3 1Q0H NDP 2.36686
4 1V59 NAD 2.66272
5 4BVA T3 2.68657
6 1GWC GTX 3.04348
7 1UPR 4IP 3.25203
8 4KFU ACP 3.30189
9 2JBM SRT 3.34448
10 2ZQO NGA 3.84615
11 1FHW I5P 3.87597
12 5A1S FLC 4.43787
13 3GXW SIN 4.85437
14 2F7C CCU 5.15021
15 3TKY SAH 5.6213
16 5KOD IAC 5.6213
17 1NVM NAD 6.80473
18 6ACS CIT 7.36434
19 2BES RES 8.72093
20 3K7S R52 9.49721
21 1GYY FHC 11.8421
22 1MXI SAH 11.875
23 4URF 1PS 15.7258
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