Receptor
PDB id Resolution Class Description Source Keywords
5FPX 1.5 Å NON-ENZYME: OTHER THE STRUCTURE OF KDGF FROM YERSINIA ENTEROCOLITICA. YERSINIA ENTEROCOLITICA HYDROLASE KDGF PECTIN ALGINATE URONATE SUGAR METABOLISM
Ref.: KDGF, THE MISSING LINK IN THE MICROBIAL METABOLISM URONATE SUGARS FROM PECTIN AND ALGINATE. PROC.NATL.ACAD.SCI.USA V. 113 6188 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NI A:1105;
B:1105;
Part of Protein;
Part of Protein;
none;
none;
submit data
58.693 Ni [Ni+2...
GLY SER SER HIS HIS HIS HIS HIS E:1;
F:1;
Valid;
Valid;
Atoms found LESS than expected: % Diff = 0;
Atoms found LESS than expected: % Diff = 0;
submit data
782.8 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5FPX 1.5 Å NON-ENZYME: OTHER THE STRUCTURE OF KDGF FROM YERSINIA ENTEROCOLITICA. YERSINIA ENTEROCOLITICA HYDROLASE KDGF PECTIN ALGINATE URONATE SUGAR METABOLISM
Ref.: KDGF, THE MISSING LINK IN THE MICROBIAL METABOLISM URONATE SUGARS FROM PECTIN AND ALGINATE. PROC.NATL.ACAD.SCI.USA V. 113 6188 2016
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1579 families.
1 5FPZ - MLA C3 H4 O4 C(C(=O)O)C....
2 5FPX - GLY SER SER HIS HIS HIS HIS HIS n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1312 families.
1 5FPZ - MLA C3 H4 O4 C(C(=O)O)C....
2 5FPX - GLY SER SER HIS HIS HIS HIS HIS n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1130 families.
1 5FPZ - MLA C3 H4 O4 C(C(=O)O)C....
2 5FPX - GLY SER SER HIS HIS HIS HIS HIS n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLY SER SER HIS HIS HIS HIS HIS; Similar ligands found: 16
No: Ligand ECFP6 Tc MDL keys Tc
1 GLY SER SER HIS HIS HIS HIS HIS 1 1
2 GLY HIS GLY 0.533333 0.823529
3 HIS HIS HIS HIS HIS GLY SER 0.517241 0.941176
4 ALA HIS HIS ALA 0.4875 0.716981
5 GLY ALA ARG ALA HIS SER SER 0.466667 0.790323
6 ASP SER GLY PHE SER PHE GLY SER LYS 0.464286 0.754717
7 ALA HIS ALA 0.4625 0.698113
8 HIS HIS HIS HIS HIS HIS 0.451219 0.769231
9 PHE ASN GLU LEU SER HIS LEU 0.44 0.824561
10 LYS SER HIS GLN GLU 0.432692 0.872727
11 ALA HIS HIS 0.432099 0.754717
12 SER HIS MET ALA GLU ILE 0.431579 0.779661
13 LYS GLY GLY ALA ALY ARG HIS ARG LYS VAL 0.428571 0.68254
14 GLY HIS ARG PRO NH2 0.428571 0.661538
15 ACE LEU HIS SER TPO ALA NH2 0.419048 0.723077
16 LYS HIS LYS 0.411111 0.763636
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5FPX; Ligand: GLY SER SER HIS HIS HIS HIS HIS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5fpx.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
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