Receptor
PDB id Resolution Class Description Source Keywords
5FQD 2.45 Å EC: 6.3.2.19 STRUCTURAL BASIS OF LENALIDOMIDE INDUCED CK1A DEGRADATION BY CRL4CRBN UBIQUITIN LIGASE HOMO SAPIENS LIGASE DNA BINDING
Ref.: STRUCTURAL BASIS OF LENALIDOMIDE-INDUCED CK1ALPHA DEGRADATION BY THE CRL4(CRBN) UBIQUITIN LIGASE. NATURE V. 532 127 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
LVY B:1438;
E:1438;
Valid;
Valid;
none;
none;
Kd = 242 nM
259.261 C13 H13 N3 O3 c1cc2...
ZN B:1437;
E:1437;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5FQD 2.45 Å EC: 6.3.2.19 STRUCTURAL BASIS OF LENALIDOMIDE INDUCED CK1A DEGRADATION BY CRL4CRBN UBIQUITIN LIGASE HOMO SAPIENS LIGASE DNA BINDING
Ref.: STRUCTURAL BASIS OF LENALIDOMIDE-INDUCED CK1ALPHA DEGRADATION BY THE CRL4(CRBN) UBIQUITIN LIGASE. NATURE V. 532 127 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 5FQD Kd = 242 nM LVY C13 H13 N3 O3 c1cc2c(c(c....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 5FQD Kd = 242 nM LVY C13 H13 N3 O3 c1cc2c(c(c....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 5FQD Kd = 242 nM LVY C13 H13 N3 O3 c1cc2c(c(c....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: LVY; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 LVY 1 1
2 Y70 0.485294 0.910714
3 EF2 0.451613 0.854545
4 6EL 0.451613 0.854545
Similar Ligands (3D)
Ligand no: 1; Ligand: LVY; Similar ligands found: 502
No: Ligand Similarity coefficient
1 JO5 0.9576
2 1FL 0.9535
3 3CA 0.9518
4 F4U 0.9457
5 6WR 0.9392
6 H75 0.9370
7 D64 0.9347
8 FHI 0.9319
9 EES 0.9310
10 M3W 0.9308
11 KMP 0.9304
12 272 0.9293
13 GEN 0.9289
14 EI1 0.9288
15 MQR 0.9276
16 VT3 0.9275
17 9CE 0.9267
18 1HP 0.9267
19 H7S 0.9257
20 E9L 0.9256
21 5E5 0.9254
22 20D 0.9252
23 WCU 0.9252
24 NAR 0.9251
25 PFT 0.9251
26 ADN 0.9241
27 CDJ 0.9237
28 W8L 0.9236
29 AJ6 0.9236
30 H2W 0.9233
31 HH6 0.9233
32 1V1 0.9231
33 YE6 0.9228
34 Q11 0.9226
35 KW7 0.9225
36 2P3 0.9221
37 WLH 0.9221
38 BXZ 0.9220
39 CC5 0.9214
40 JFS 0.9210
41 AGI 0.9207
42 AJ4 0.9207
43 TGW 0.9203
44 CUT 0.9202
45 A73 0.9200
46 697 0.9196
47 LR2 0.9195
48 5B2 0.9192
49 4L2 0.9192
50 3WJ 0.9192
51 DFL 0.9190
52 0OK 0.9186
53 1SF 0.9185
54 5NN 0.9185
55 MEX 0.9184
56 LZJ 0.9180
57 9JT 0.9173
58 IQW 0.9172
59 RGK 0.9166
60 BJ4 0.9165
61 SZ5 0.9165
62 3F4 0.9162
63 CUH 0.9162
64 A9B 0.9158
65 NU3 0.9158
66 OA4 0.9157
67 DX2 0.9154
68 3GX 0.9152
69 G2V 0.9151
70 5OR 0.9151
71 MRI 0.9145
72 MQS 0.9144
73 KWB 0.9143
74 NYJ 0.9130
75 4EU 0.9130
76 X29 0.9127
77 42R 0.9127
78 0UL 0.9124
79 25F 0.9124
80 5AD 0.9123
81 CUQ 0.9123
82 4NR 0.9118
83 5WW 0.9115
84 JSX 0.9114
85 J84 0.9113
86 JOH 0.9111
87 MZR 0.9109
88 96Z 0.9108
89 TRP 0.9104
90 H4B 0.9103
91 F18 0.9099
92 ARJ 0.9099
93 JOB 0.9089
94 F40 0.9081
95 4K2 0.9081
96 RFZ 0.9074
97 C2M 0.9074
98 4MP 0.9073
99 XIF XYP 0.9073
100 XYP XYS 0.9073
101 6DQ 0.9071
102 DXK 0.9070
103 2JX 0.9070
104 7L4 0.9070
105 A63 0.9069
106 SGW 0.9068
107 AUV 0.9062
108 CBE 0.9058
109 JNW 0.9058
110 6H2 0.9058
111 FCW 0.9056
112 XYP XYP 0.9054
113 KXN 0.9053
114 NKI 0.9052
115 TI7 0.9052
116 5C1 0.9050
117 QME 0.9050
118 AP6 0.9049
119 NOC 0.9046
120 5I5 0.9043
121 NIY 0.9043
122 DKZ 0.9041
123 1XS 0.9041
124 DKX 0.9040
125 EV2 0.9039
126 3WL 0.9039
127 ZRL 0.9038
128 NAL 0.9037
129 0SY 0.9035
130 27M 0.9033
131 7EH 0.9033
132 YUG 0.9032
133 CJB 0.9031
134 Y3J 0.9029
135 NOS 0.9027
136 DK4 0.9026
137 GPK 0.9026
138 DFV 0.9025
139 5WK 0.9024
140 ZRK 0.9023
141 1Q4 0.9022
142 L3L 0.9020
143 KF5 0.9020
144 08C 0.9016
145 XYS XYS 0.9015
146 SJR 0.9010
147 O9Z 0.9009
148 XYP XIF 0.9009
149 E6Q 0.9007
150 91F 0.9005
151 O9T 0.9002
152 IMH 0.9001
153 92O 0.9000
154 AUG 0.9000
155 P4L 0.8996
156 TCL 0.8996
157 U4J 0.8994
158 5S9 0.8993
159 1V4 0.8992
160 1UZ 0.8987
161 CTE 0.8987
162 MIL 0.8986
163 GPQ 0.8986
164 789 0.8984
165 5UD 0.8984
166 DBE 0.8984
167 Z15 0.8983
168 H2B 0.8983
169 0DF 0.8980
170 WVV 0.8979
171 DDC 0.8978
172 0X2 0.8978
173 LWS 0.8974
174 EMU 0.8965
175 GMP 0.8964
176 AUE 0.8964
177 LFQ 0.8964
178 GPU 0.8960
179 Z57 0.8960
180 TC8 0.8958
181 0OY 0.8958
182 FT6 0.8957
183 DE7 0.8955
184 M2E 0.8955
185 7ZO 0.8955
186 TCC 0.8955
187 3QI 0.8951
188 S1D 0.8949
189 9K2 0.8946
190 47X 0.8945
191 7G0 0.8944
192 DX7 0.8944
193 5FD 0.8944
194 KCH 0.8943
195 XDN XYP 0.8942
196 MTA 0.8942
197 LI4 0.8941
198 AVA 0.8938
199 9FH 0.8936
200 XYP XDN 0.8934
201 LU2 0.8932
202 7FZ 0.8928
203 CWE 0.8923
204 HBI 0.8920
205 DCN 0.8920
206 7GY 0.8917
207 TPM 0.8915
208 FY8 0.8915
209 J27 0.8914
210 57D 0.8914
211 40N 0.8914
212 FB4 0.8913
213 3WK 0.8911
214 3JC 0.8911
215 PIQ 0.8911
216 XIL 0.8910
217 XDL XYP 0.8910
218 LI7 0.8909
219 0NJ 0.8908
220 PV1 0.8907
221 50Q 0.8905
222 IMK 0.8904
223 GFE 0.8904
224 DH2 0.8902
225 833 0.8900
226 STZ 0.8899
227 YX1 0.8899
228 6WU 0.8897
229 DBS 0.8897
230 FPL 0.8896
231 27F 0.8896
232 QUE 0.8896
233 4AB 0.8896
234 NVS 0.8895
235 TVZ 0.8892
236 2D2 0.8891
237 4CN 0.8890
238 1R5 0.8889
239 EAJ 0.8889
240 ZZA 0.8888
241 JA3 0.8887
242 TH1 0.8886
243 DQH 0.8883
244 7EL 0.8879
245 MW5 0.8879
246 5CD 0.8878
247 G14 0.8872
248 Q4G 0.8871
249 OSY 0.8870
250 0K7 0.8870
251 B7H 0.8868
252 AX4 0.8866
253 CHV 0.8866
254 5R9 0.8865
255 RAB 0.8865
256 ERZ 0.8864
257 8UY 0.8864
258 A4T 0.8864
259 BHS 0.8861
260 0HY 0.8859
261 L1T 0.8859
262 5ZM 0.8858
263 4AU 0.8858
264 6XC 0.8858
265 S46 0.8855
266 5N5 0.8853
267 BGK 0.8849
268 3RP 0.8847
269 QC1 0.8845
270 5R8 0.8843
271 7VF 0.8843
272 KHP 0.8843
273 A4N 0.8843
274 68B 0.8842
275 MJ5 0.8841
276 K48 0.8840
277 WDW 0.8840
278 22T 0.8838
279 GJB 0.8838
280 XYS XYP 0.8837
281 5CK 0.8836
282 FT1 0.8834
283 A18 0.8833
284 FYR 0.8832
285 NWD 0.8831
286 0ON 0.8831
287 3IP 0.8829
288 OJ7 0.8829
289 6DE 0.8828
290 BIO 0.8825
291 ZMG 0.8823
292 CH8 0.8823
293 S0G 0.8822
294 BG8 0.8822
295 KP2 0.8820
296 TYP 0.8819
297 2FA 0.8815
298 RSV 0.8814
299 8OB 0.8813
300 X2M 0.8813
301 JCZ 0.8813
302 C4F 0.8811
303 9FG 0.8809
304 LL1 0.8806
305 3SU 0.8806
306 0MB 0.8805
307 5VU 0.8805
308 A5K 0.8804
309 28A 0.8804
310 15Q 0.8802
311 69K 0.8800
312 AC2 0.8800
313 B5A 0.8799
314 AWE 0.8799
315 5DE 0.8798
316 38B 0.8796
317 2QV 0.8796
318 C4E 0.8795
319 CTN 0.8795
320 FT3 0.8792
321 E9P 0.8791
322 1AJ 0.8789
323 W23 0.8788
324 JPB 0.8787
325 5F1 0.8785
326 848 0.8783
327 ELH 0.8782
328 1Q1 0.8781
329 TMC 0.8780
330 5F7 0.8778
331 VBC 0.8778
332 97K 0.8778
333 FM2 0.8772
334 64I 0.8770
335 PQS 0.8768
336 B4L 0.8767
337 LOX XYP 0.8767
338 SAK 0.8766
339 0OL 0.8765
340 6SX 0.8763
341 P2L 0.8762
342 AX1 0.8762
343 X0T 0.8762
344 H52 0.8762
345 O9Q 0.8760
346 0GA 0.8759
347 MYC 0.8758
348 26C 0.8755
349 C93 0.8753
350 AFX 0.8753
351 SOJ 0.8752
352 L5D 0.8751
353 CU8 0.8750
354 6CR 0.8750
355 3L1 0.8750
356 1A5 0.8749
357 A4D 0.8749
358 VJJ 0.8749
359 C0H 0.8746
360 NK5 0.8744
361 PZ8 0.8742
362 1GM 0.8742
363 VIB 0.8741
364 OJD 0.8739
365 4FP 0.8739
366 XDH 0.8738
367 TBN 0.8737
368 EAT 0.8735
369 PUR 0.8733
370 NPZ 0.8733
371 FT2 0.8731
372 9DI 0.8731
373 XEV 0.8729
374 FMQ 0.8728
375 78U 0.8725
376 AHU 0.8725
377 XYA 0.8724
378 C0W 0.8723
379 GJG 0.8723
380 IQQ 0.8722
381 FMB 0.8721
382 Q9P 0.8721
383 BGC BGC 0.8720
384 2L2 0.8720
385 B2L 0.8719
386 5NB 0.8718
387 F91 0.8716
388 TCW 0.8714
389 89J 0.8713
390 A8K 0.8712
391 88R 0.8710
392 3AD 0.8710
393 CP6 0.8710
394 8OE 0.8709
395 AD3 0.8708
396 PRH 0.8708
397 LZK 0.8706
398 4FC 0.8706
399 TCT 0.8705
400 4DE 0.8703
401 3AK 0.8703
402 5YA 0.8702
403 LJ4 0.8702
404 6MD 0.8701
405 Q8G 0.8699
406 531 0.8694
407 A 0.8693
408 1DA 0.8693
409 HO6 0.8691
410 LM7 0.8688
411 2PV 0.8686
412 2PK 0.8686
413 35G 0.8685
414 RPP 0.8682
415 2L1 0.8681
416 7QY 0.8679
417 5ID 0.8676
418 A6H 0.8676
419 M77 0.8675
420 OUA 0.8674
421 BIE 0.8674
422 5V7 0.8674
423 FMC 0.8674
424 ETV 0.8672
425 MTP 0.8671
426 X6P 0.8670
427 7G1 0.8670
428 3BH 0.8665
429 3WN 0.8665
430 3WO 0.8665
431 A9K 0.8665
432 78P 0.8663
433 5CJ 0.8662
434 NXB 0.8662
435 0J4 0.8661
436 51Y 0.8660
437 3D1 0.8660
438 LZ5 0.8659
439 S0D 0.8658
440 LP8 0.8656
441 XDI 0.8654
442 IEE 0.8653
443 SX3 0.8651
444 3DE 0.8650
445 7PS 0.8650
446 PV2 0.8649
447 MG7 0.8649
448 26A 0.8648
449 B52 0.8647
450 HX8 0.8644
451 HPR 0.8642
452 C5Q 0.8638
453 CDY 0.8635
454 J8G 0.8635
455 7M5 0.8635
456 J47 0.8635
457 11X 0.8634
458 M16 0.8634
459 121 0.8634
460 MDR 0.8632
461 5TU 0.8630
462 54E 0.8629
463 IRH 0.8626
464 Y0V 0.8626
465 SOV 0.8623
466 PNJ 0.8623
467 6NZ 0.8619
468 MQ1 0.8619
469 THM 0.8617
470 EZB 0.8616
471 DTR 0.8616
472 1CY 0.8613
473 GA2 0.8612
474 HA6 0.8612
475 JAK 0.8611
476 UAY 0.8604
477 4GP 0.8603
478 QTD 0.8603
479 FM1 0.8602
480 GLC BGC 0.8602
481 613 0.8601
482 XI7 0.8600
483 OAK 0.8596
484 AMR 0.8595
485 M78 0.8593
486 W1G 0.8591
487 CMP 0.8590
488 5P3 0.8582
489 Q8D 0.8580
490 OSP 0.8578
491 0Q2 0.8578
492 8Y7 0.8574
493 2LT 0.8572
494 PQM 0.8568
495 5XM 0.8560
496 0OO 0.8557
497 13A 0.8549
498 9KZ 0.8543
499 PV4 0.8542
500 JFZ 0.8527
501 6SZ 0.8523
502 NPS 0.8505
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5FQD; Ligand: LVY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5fqd.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5FQD; Ligand: LVY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5fqd.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
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