Receptor
PDB id Resolution Class Description Source Keywords
5GMD 1.5 Å EC: 4.1.1.33 CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS DIPHOSPHOMEVALO DECARBOXYLASE IN COMPLEX WITH ATP-GAMMA-S SULFOLOBUS SOLFATARICUS (STRAIN ATCC 3DSM 1617 / JCM 11322 / P2) SULFOLOBUS SOLFATARICUS DIPHOSPHOMEVALONATE DECARBOXYLASE LYASE
Ref.: A SINGLE AMINO ACID MUTATION CONVERTS (R)-5-DIPHOSPHOMEVALONATE DECARBOXYLASE INTO A KINA J. BIOL. CHEM. V. 292 2457 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AGS A:1002;
Valid;
none;
submit data
523.247 C10 H16 N5 O12 P3 S c1nc(...
SO4 A:1004;
A:1005;
Invalid;
Invalid;
none;
none;
submit data
96.063 O4 S [O-]S...
AMP A:1003;
Valid;
none;
submit data
347.221 C10 H14 N5 O7 P c1nc(...
DP6 A:1001;
Valid;
none;
submit data
308.117 C6 H14 O10 P2 C[C@@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5GMD 1.5 Å EC: 4.1.1.33 CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS DIPHOSPHOMEVALO DECARBOXYLASE IN COMPLEX WITH ATP-GAMMA-S SULFOLOBUS SOLFATARICUS (STRAIN ATCC 3DSM 1617 / JCM 11322 / P2) SULFOLOBUS SOLFATARICUS DIPHOSPHOMEVALONATE DECARBOXYLASE LYASE
Ref.: A SINGLE AMINO ACID MUTATION CONVERTS (R)-5-DIPHOSPHOMEVALONATE DECARBOXYLASE INTO A KINA J. BIOL. CHEM. V. 292 2457 2017
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 5GME - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
2 5GMD - AMP C10 H14 N5 O7 P c1nc(c2c(n....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 5GME - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
2 5GMD - AMP C10 H14 N5 O7 P c1nc(c2c(n....
50% Homology Family (19)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4DU8 - 2P0 C7 H13 N O10 P2 C1C[C@H](N....
2 4DPY - 2P0 C7 H13 N O10 P2 C1C[C@H](N....
3 4DPT - FM0 C6 H13 F O10 P2 C(CO[P@](=....
4 3QT6 Ki = 4.3 uM 2P0 C7 H13 N O10 P2 C1C[C@H](N....
5 4DPU - FM0 C6 H13 F O10 P2 C(CO[P@](=....
6 3QT7 Ki = 49 uM FM0 C6 H13 F O10 P2 C(CO[P@](=....
7 4DU7 - DP6 C6 H14 O10 P2 C[C@@](CCO....
8 3QT8 - FM0 C6 H13 F O10 P2 C(CO[P@](=....
9 5GME - ADP C10 H15 N5 O10 P2 c1nc(c2c(n....
10 5GMD - AMP C10 H14 N5 O7 P c1nc(c2c(n....
11 6N0Z - DP6 C6 H14 O10 P2 C[C@@](CCO....
12 6N0X - PMV C6 H13 O7 P C[C@@](CCO....
13 6N0Y - DP6 C6 H14 O10 P2 C[C@@](CCO....
14 6E2V - DP6 C6 H14 O10 P2 C[C@@](CCO....
15 6E2W - DP6 C6 H14 O10 P2 C[C@@](CCO....
16 6E2U - ACP C11 H18 N5 O12 P3 c1nc(c2c(n....
17 6E2Y - DP6 C6 H14 O10 P2 C[C@@](CCO....
18 5V2L - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
19 6E2T - DP6 C6 H14 O10 P2 C[C@@](CCO....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: AGS; Similar ligands found: 486
No: Ligand ECFP6 Tc MDL keys Tc
1 AGS 1 1
2 BA3 0.887324 0.92
3 B4P 0.875 0.92
4 AP5 0.875 0.92
5 A2D 0.859155 0.92
6 ATP 0.84 0.945946
7 HEJ 0.84 0.945946
8 5FA 0.828947 0.945946
9 AQP 0.828947 0.945946
10 AN2 0.813333 0.933333
11 ADP 0.8 0.945946
12 AT4 0.789474 0.986486
13 APR 0.782051 0.92
14 AR6 0.782051 0.92
15 M33 0.779221 0.907895
16 AD9 0.772152 0.921053
17 ACP 0.769231 0.921053
18 HQG 0.759036 0.933333
19 SRA 0.756757 0.972973
20 A22 0.75 0.933333
21 50T 0.746835 0.907895
22 AMP 0.743243 0.918919
23 A 0.743243 0.918919
24 ADX 0.734177 0.9
25 CA0 0.734177 0.896104
26 ADQ 0.732558 0.896104
27 ANP 0.731707 0.921053
28 ACQ 0.731707 0.921053
29 25L 0.730337 0.933333
30 6YZ 0.72619 0.921053
31 KG4 0.725 0.896104
32 PRX 0.716049 0.848101
33 9X8 0.715909 0.947368
34 OAD 0.715909 0.896104
35 ATF 0.714286 0.909091
36 45A 0.714286 0.87013
37 ABM 0.714286 0.87013
38 AMP MG 0.710526 0.88
39 JNT 0.704545 0.896104
40 A12 0.696203 0.909091
41 AP2 0.696203 0.909091
42 A1R 0.693182 0.8625
43 A3R 0.693182 0.8625
44 T99 0.690476 0.986486
45 TAT 0.690476 0.986486
46 5AL 0.682353 0.883117
47 8LE 0.682353 0.85
48 25A 0.681818 0.92
49 3OD 0.681319 0.896104
50 ADP MG 0.679012 0.893333
51 ADP BEF 0.679012 0.893333
52 APC 0.674699 0.909091
53 AU1 0.670732 0.921053
54 SRP 0.666667 0.860759
55 APC MG 0.666667 0.87013
56 8LH 0.666667 0.860759
57 KMQ 0.659574 0.884615
58 G3A 0.65625 0.875
59 4AD 0.655556 0.873418
60 QA7 0.651685 0.85
61 8LQ 0.651685 0.860759
62 G5P 0.649485 0.875
63 AFH 0.649485 0.841463
64 00A 0.648352 0.839506
65 ADP PO3 0.647059 0.893333
66 ATP MG 0.647059 0.893333
67 RBY 0.647059 0.884615
68 ADV 0.647059 0.884615
69 BIS 0.645161 0.886076
70 OZV 0.644444 0.92
71 5SV 0.644444 0.807229
72 8QN 0.644444 0.883117
73 OOB 0.644444 0.883117
74 GTA 0.642857 0.843373
75 BEF ADP 0.639535 0.87013
76 PAJ 0.637363 0.841463
77 AMO 0.637363 0.884615
78 VO4 ADP 0.636364 0.896104
79 ITT 0.630952 0.893333
80 DLL 0.630435 0.883117
81 AHX 0.630435 0.851852
82 NB8 0.62766 0.851852
83 V2G 0.625 0.851852
84 UP5 0.623762 0.873418
85 3UK 0.623656 0.871795
86 SON 0.619048 0.884615
87 ANP MG 0.617977 0.883117
88 ALF ADP 0.617977 0.82716
89 OMR 0.617647 0.811765
90 WAQ 0.617021 0.839506
91 LAD 0.617021 0.819277
92 B5V 0.617021 0.860759
93 PR8 0.617021 0.809524
94 DAL AMP 0.615385 0.858974
95 MAP 0.615385 0.897436
96 GAP 0.613636 0.848101
97 LMS 0.6125 0.853659
98 7D4 0.611765 0.858974
99 1ZZ 0.610526 0.8
100 ME8 0.610526 0.821429
101 PTJ 0.610526 0.851852
102 FYA 0.610526 0.858974
103 TXA 0.610526 0.884615
104 DQV 0.61 0.907895
105 PAP 0.609195 0.932432
106 ATR 0.609195 0.918919
107 6V0 0.607843 0.851852
108 NAX 0.607843 0.831325
109 NAI 0.607843 0.8625
110 ADP BMA 0.606383 0.871795
111 A4P 0.605769 0.804598
112 A2R 0.604396 0.933333
113 RAB 0.60274 0.8
114 ADN 0.60274 0.8
115 XYA 0.60274 0.8
116 48N 0.598039 0.851852
117 9SN 0.597938 0.829268
118 139 0.59434 0.831325
119 T5A 0.59434 0.802326
120 TXD 0.592233 0.8625
121 DND 0.592233 0.884615
122 B5Y 0.591837 0.85
123 B5M 0.591837 0.85
124 FA5 0.591837 0.860759
125 9ZD 0.591398 0.8625
126 9ZA 0.591398 0.8625
127 TXE 0.586538 0.8625
128 XAH 0.585859 0.8
129 HFD 0.58427 0.897436
130 JSQ 0.58427 0.897436
131 GA7 0.584158 0.860759
132 AP0 0.580952 0.851852
133 L3W 0.580952 0.884615
134 4UV 0.58 0.85
135 2A5 0.579545 0.871795
136 AOC 0.578313 0.779221
137 COD 0.577982 0.795455
138 A3P 0.576471 0.918919
139 ATP A A A 0.575758 0.881579
140 ATP A 0.575758 0.881579
141 CNA 0.574074 0.884615
142 LAQ 0.572816 0.865854
143 5AS 0.569767 0.804598
144 4UU 0.568627 0.85
145 YLP 0.567308 0.781609
146 4TC 0.566038 0.851852
147 YLB 0.566038 0.781609
148 UPA 0.566038 0.8625
149 5N5 0.565789 0.776316
150 ADJ 0.564815 0.811765
151 7D3 0.564706 0.858974
152 3AM 0.560976 0.88
153 A4D 0.558442 0.8
154 5CD 0.558442 0.763158
155 A2P 0.55814 0.905405
156 NA7 0.556701 0.909091
157 F2R 0.554545 0.823529
158 PPS 0.554348 0.9
159 H1Q 0.550562 0.857143
160 G5A 0.549451 0.804598
161 GSP 0.547368 0.924051
162 4UW 0.54717 0.819277
163 JB6 0.545455 0.910256
164 3AT 0.543478 0.92
165 TYM 0.542056 0.860759
166 MYR AMP 0.54 0.77907
167 80F 0.539823 0.845238
168 AR6 AR6 0.538462 0.87013
169 EP4 0.5375 0.716049
170 YLC 0.537037 0.8
171 7D5 0.536585 0.833333
172 NAD 0.535714 0.883117
173 DTA 0.530864 0.792208
174 M2T 0.530864 0.719512
175 2AM 0.53012 0.893333
176 3DH 0.53012 0.75641
177 AHZ 0.528302 0.821429
178 IOT 0.527273 0.793103
179 DTP 0.526882 0.858974
180 A3D 0.526316 0.871795
181 SSA 0.526316 0.825581
182 MTA 0.52439 0.75641
183 ARG AMP 0.52381 0.790698
184 YLA 0.522523 0.781609
185 BTX 0.522124 0.845238
186 6AD 0.521277 0.911392
187 AMP DBH 0.519231 0.848101
188 TAD 0.518868 0.8875
189 AYB 0.517857 0.772727
190 BT5 0.517544 0.835294
191 A5A 0.515789 0.833333
192 TSB 0.515464 0.845238
193 OVE 0.511628 0.933333
194 6RE 0.511628 0.722892
195 7DT 0.51087 0.932432
196 V3L 0.510638 0.92
197 AVV 0.510204 0.851852
198 7MD 0.509434 0.821429
199 LPA AMP 0.509259 0.843373
200 0WD 0.508772 0.875
201 NAE 0.508475 0.85
202 VMS 0.505155 0.813953
203 54H 0.505155 0.813953
204 NO7 0.505155 0.884615
205 52H 0.505155 0.804598
206 NSS 0.50505 0.825581
207 NAQ 0.504202 0.829268
208 EAD 0.504132 0.831325
209 FB0 0.504 0.769231
210 53H 0.5 0.804598
211 ALF ADP 3PG 0.5 0.797619
212 ZID 0.5 0.871795
213 CUU 0.5 0.92
214 IMO 0.5 0.88
215 J7C 0.5 0.731707
216 ZAS 0.5 0.728395
217 38V 0.5 0.843373
218 8X1 0.5 0.777778
219 AV2 0.5 0.87013
220 AF3 ADP 3PG 0.5 0.797619
221 RGT 0.5 0.909091
222 NJP 0.5 0.897436
223 NVA LMS 0.5 0.777778
224 M24 0.5 0.809524
225 5CA 0.5 0.825581
226 ARU 0.5 0.819277
227 A3N 0.5 0.746835
228 D4F 0.495798 0.843373
229 NPW 0.495575 0.843373
230 NDP 0.495575 0.875
231 NAD TDB 0.495495 0.87013
232 NAD IBO 0.495495 0.87013
233 LEU LMS 0.49505 0.736264
234 DDS 0.494737 0.833333
235 S4M 0.494382 0.655556
236 6MZ 0.494382 0.881579
237 6FA 0.492188 0.802326
238 DZD 0.491379 0.841463
239 NZQ 0.491228 0.864198
240 P5A 0.490196 0.769231
241 LSS 0.49 0.786517
242 DSZ 0.49 0.825581
243 MAO 0.488889 0.724138
244 DSH 0.488636 0.710843
245 P1H 0.488 0.811765
246 N0B 0.487603 0.781609
247 YLY 0.487395 0.772727
248 ODP 0.486957 0.864198
249 8PZ 0.485714 0.825581
250 9K8 0.485437 0.758242
251 FAS 0.484615 0.811765
252 FAD 0.484615 0.811765
253 SFD 0.484615 0.776596
254 FDA 0.484375 0.795455
255 O02 0.484211 0.875
256 DAT 0.483871 0.858974
257 5X8 0.483871 0.746835
258 NAJ PZO 0.483051 0.807229
259 7MC 0.482143 0.802326
260 NWW 0.481481 0.72
261 62F 0.481203 0.821429
262 LQJ 0.481132 0.87013
263 PO4 PO4 A A A A PO4 0.480392 0.855263
264 7DD 0.478261 0.932432
265 TXP 0.478261 0.875
266 GJV 0.477778 0.714286
267 NDE 0.47619 0.884615
268 KAA 0.475728 0.777778
269 GSU 0.475728 0.804598
270 5AD 0.474359 0.706667
271 A3G 0.47191 0.759494
272 K3K 0.471698 0.7625
273 XNP 0.470085 0.831325
274 AMP NAD 0.470085 0.858974
275 4TA 0.470085 0.770115
276 GP3 0.46875 0.875
277 NDC 0.46875 0.829268
278 6C6 0.46875 0.8375
279 7D7 0.468354 0.705128
280 SFG 0.468085 0.7125
281 YSA 0.46729 0.804598
282 NAJ PYZ 0.467213 0.770115
283 FAY 0.466667 0.821429
284 DCA 0.466667 0.786517
285 ETB 0.466667 0.795455
286 128 0.464286 0.741573
287 RFL 0.463235 0.784091
288 PUA 0.46281 0.841463
289 A7D 0.462366 0.759494
290 FNK 0.459259 0.769231
291 0T1 0.459016 0.786517
292 COA 0.459016 0.806818
293 7C5 0.458716 0.777778
294 A5D 0.458333 0.792208
295 SA8 0.458333 0.674419
296 MHZ 0.457447 0.666667
297 71V 0.456522 0.910256
298 8Q2 0.45614 0.797753
299 NEC 0.455556 0.708861
300 GGZ 0.455446 0.851852
301 B1U 0.453704 0.76087
302 SAH 0.453608 0.728395
303 SAI 0.453608 0.698795
304 Y3J 0.451219 0.688312
305 GEK 0.45098 0.722892
306 AS 0.450549 0.884615
307 4YB 0.45045 0.786517
308 SMM 0.45 0.674157
309 GTP 0.45 0.873418
310 V47 0.45 0.74359
311 K3E 0.449541 0.753086
312 6IA 0.44898 0.797619
313 SAM 0.44898 0.678161
314 AMX 0.448 0.795455
315 COS 0.448 0.808989
316 CAO 0.448 0.8
317 30N 0.448 0.776596
318 TAP 0.448 0.935065
319 J4G 0.447619 0.873418
320 SCO 0.444444 0.786517
321 AAT 0.444444 0.714286
322 CMX 0.444444 0.786517
323 EEM 0.444444 0.659091
324 P5F 0.443662 0.786517
325 KOY 0.442478 0.7625
326 PGS 0.442105 0.910256
327 FCX 0.440945 0.76087
328 ACO 0.440945 0.8
329 FAM 0.440945 0.769231
330 2SA 0.44 0.884615
331 HDV 0.44 0.848101
332 NAP 0.44 0.896104
333 9JJ 0.439716 0.821429
334 APU 0.439655 0.85
335 D5M 0.43956 0.833333
336 DA 0.43956 0.833333
337 HAX 0.4375 0.769231
338 QXP 0.436893 0.811765
339 Z5A 0.436508 0.744444
340 DG1 0.436508 0.875
341 1DG 0.436508 0.875
342 V1N 0.436364 0.87013
343 S7M 0.435644 0.678161
344 2MC 0.435115 0.774194
345 649 0.434783 0.769231
346 WSA 0.434783 0.813953
347 AAM 0.434783 0.918919
348 CZF 0.434343 0.883117
349 3KK 0.434109 0.808989
350 FYN 0.434109 0.806818
351 NMN AMP PO4 0.433333 0.82716
352 7L1 0.433071 0.8
353 NA0 0.433071 0.884615
354 C2R 0.431818 0.857143
355 AMZ 0.431818 0.868421
356 A3S 0.431579 0.769231
357 SOP 0.430769 0.788889
358 CA6 0.430769 0.752577
359 YZS 0.430769 0.770833
360 MCD 0.430769 0.769231
361 KGP 0.430769 0.770833
362 OXK 0.430769 0.808989
363 COK 0.430769 0.808989
364 QBQ 0.43 0.860759
365 GNH 0.43 0.8625
366 62X 0.428571 0.637363
367 101 0.428571 0.833333
368 N6P 0.428571 0.866667
369 NVA 2AD 0.428571 0.722892
370 F2N 0.427586 0.777778
371 CO6 0.427481 0.808989
372 CMC 0.427481 0.788889
373 NMX 0.427481 0.729167
374 1VU 0.427481 0.8
375 GKE 0.427273 0.841463
376 GDC 0.427273 0.841463
377 K2W 0.427273 0.705882
378 GDD 0.427273 0.841463
379 NWQ 0.426966 0.701299
380 SCA 0.425373 0.808989
381 9BG 0.425 0.851852
382 FA9 0.424658 0.823529
383 A6D 0.424528 0.729412
384 QXG 0.424528 0.802326
385 K15 0.424528 0.651685
386 CAJ 0.424242 0.769231
387 SCD 0.424242 0.786517
388 N5O 0.423913 0.725
389 AIR 0.423529 0.853333
390 6K6 0.423077 0.881579
391 A3T 0.42268 0.779221
392 NIA 0.422222 0.783133
393 KGA 0.422222 0.714286
394 K38 0.422018 0.740741
395 NHD 0.421488 0.858974
396 KGJ 0.421053 0.721649
397 3HC 0.421053 0.818182
398 IVC 0.421053 0.818182
399 MLC 0.421053 0.808989
400 BCO 0.421053 0.808989
401 1HE 0.421053 0.791209
402 A1S 0.421053 0.788889
403 12D 0.421053 0.75
404 R2V 0.420561 0.811765
405 1CZ 0.42029 0.820225
406 GDP 0.42 0.873418
407 0UM 0.419048 0.666667
408 FAJ 0.418919 0.793103
409 CAA 0.41791 0.818182
410 COO 0.41791 0.808989
411 MCA 0.41791 0.8
412 LCV 0.41791 0.762887
413 YE1 0.41791 0.777778
414 SO5 0.41791 0.762887
415 GCP 0.417476 0.851852
416 G1R 0.417476 0.8625
417 OZP 0.417391 0.694118
418 NAD CJ3 0.417266 0.837209
419 SXZ 0.416667 0.697674
420 O05 0.416667 0.804598
421 K2H 0.415094 0.719512
422 N5A 0.414894 0.7
423 YXS 0.414815 0.770833
424 MC4 0.414815 0.765957
425 YXR 0.414815 0.770833
426 2CP 0.414815 0.78022
427 K3H 0.414414 0.714286
428 ZDA 0.414141 0.820513
429 KY2 0.413462 0.697674
430 NAD BBN 0.413043 0.802326
431 KB1 0.412844 0.666667
432 COW 0.411765 0.8
433 KFV 0.411765 0.742268
434 IRC 0.411765 0.818182
435 1GZ 0.411765 0.8
436 HGG 0.411765 0.808989
437 MGP 0.411765 0.841463
438 BYC 0.411765 0.808989
439 3AD 0.411765 0.763158
440 3CP 0.411765 0.788889
441 2KQ 0.411765 0.791209
442 CA8 0.411765 0.770833
443 COF 0.411765 0.771739
444 N01 0.41129 0.858974
445 PLP AAD 0.41129 0.73913
446 S8M 0.409524 0.743902
447 COA FLC 0.409449 0.775281
448 FAQ 0.408759 0.808989
449 BCA 0.408759 0.8
450 4CA 0.408759 0.78022
451 7RP 0.408602 0.878378
452 2VA 0.408163 0.759494
453 6G0 0.407767 0.841463
454 CO7 0.407407 0.808989
455 K2K 0.407407 0.702381
456 26A 0.406977 0.725
457 Q34 0.40678 0.644444
458 QQX 0.406593 0.857143
459 GRA 0.405797 0.808989
460 HXC 0.405797 0.791209
461 KYB 0.40566 0.697674
462 KL2 0.404494 0.794872
463 7RA 0.404255 0.906667
464 FAI 0.404255 0.868421
465 GPG 0.40367 0.864198
466 K2R 0.40367 0.835443
467 TGC 0.402878 0.8
468 SP1 0.402174 0.894737
469 QQY 0.402174 0.844156
470 RP1 0.402174 0.894737
471 ACK 0.402174 0.815789
472 DZ4 0.401961 0.8375
473 KYE 0.401786 0.681818
474 APC G U 0.401575 0.795181
475 8BR 0.4 0.860759
476 KY5 0.4 0.690476
477 9GM 0.4 0.851852
478 GNP 0.4 0.851852
479 SLU 0.4 0.816092
480 KXW 0.4 0.674419
481 S0N 0.4 0.769231
482 CO8 0.4 0.791209
483 CIC 0.4 0.788889
484 2NE 0.4 0.791209
485 TM1 0.4 0.738636
486 EO7 0.4 0.813953
Ligand no: 2; Ligand: AMP; Similar ligands found: 456
No: Ligand ECFP6 Tc MDL keys Tc
1 AMP 1 1
2 A 1 1
3 45A 0.833333 0.943662
4 ABM 0.833333 0.943662
5 A2D 0.833333 0.943662
6 AMP MG 0.830769 0.956522
7 ADP 0.823529 0.971429
8 BA3 0.808824 0.943662
9 AP2 0.808824 0.931507
10 A12 0.808824 0.931507
11 SRA 0.80303 0.944444
12 AP5 0.797101 0.943662
13 B4P 0.797101 0.943662
14 HEJ 0.788732 0.971429
15 ATP 0.788732 0.971429
16 AN2 0.785714 0.957747
17 AT4 0.785714 0.931507
18 APC 0.777778 0.931507
19 5FA 0.777778 0.971429
20 AQP 0.777778 0.971429
21 AU1 0.774648 0.944444
22 CA0 0.774648 0.917808
23 ADX 0.774648 0.848101
24 M33 0.774648 0.930556
25 KG4 0.763889 0.917808
26 ACP 0.763889 0.944444
27 50T 0.763889 0.957747
28 ADP BEF 0.760563 0.942857
29 ADP MG 0.760563 0.942857
30 25A 0.75641 0.971429
31 APR 0.753425 0.943662
32 AR6 0.753425 0.943662
33 PRX 0.753425 0.917808
34 TAT 0.746667 0.931507
35 T99 0.746667 0.931507
36 ACQ 0.746667 0.944444
37 AGS 0.743243 0.918919
38 RBY 0.743243 0.905405
39 ADV 0.743243 0.905405
40 AD9 0.743243 0.944444
41 ANP 0.723684 0.944444
42 APC MG 0.72 0.916667
43 ATP MG 0.72 0.942857
44 ADP PO3 0.72 0.942857
45 6YZ 0.717949 0.944444
46 5AL 0.714286 0.930556
47 V2G 0.714286 0.894737
48 8LE 0.714286 0.893333
49 SON 0.712329 0.931507
50 BEF ADP 0.710526 0.916667
51 LMS 0.710145 0.825
52 ADN 0.709677 0.842857
53 RAB 0.709677 0.842857
54 XYA 0.709677 0.842857
55 HQG 0.708861 0.957747
56 ATF 0.705128 0.931507
57 GAP 0.701299 0.891892
58 A22 0.7 0.957747
59 8LH 0.696203 0.905405
60 SRP 0.696203 0.905405
61 7D5 0.691176 0.902778
62 A2P 0.684932 0.956522
63 A3P 0.684932 0.971014
64 ALF ADP 0.683544 0.868421
65 ANP MG 0.683544 0.930556
66 VO4 ADP 0.683544 0.944444
67 ADQ 0.682927 0.917808
68 MAP 0.679012 0.918919
69 QA7 0.679012 0.893333
70 8LQ 0.679012 0.905405
71 5SV 0.670732 0.87013
72 OZV 0.670732 0.943662
73 9ZA 0.670732 0.906667
74 9ZD 0.670732 0.906667
75 OOB 0.670732 0.930556
76 8QN 0.670732 0.930556
77 PTJ 0.670588 0.894737
78 AOC 0.666667 0.84507
79 A1R 0.662651 0.881579
80 A3R 0.662651 0.881579
81 AMO 0.662651 0.905405
82 PAJ 0.662651 0.858974
83 4AD 0.662651 0.893333
84 5N5 0.661538 0.816901
85 DAL AMP 0.658537 0.90411
86 IMO 0.657534 0.928571
87 DLL 0.654762 0.930556
88 00A 0.654762 0.881579
89 AHX 0.654762 0.87013
90 JNT 0.654762 0.917808
91 5AS 0.653333 0.776471
92 A4D 0.651515 0.816901
93 5CD 0.651515 0.828571
94 6MZ 0.648649 0.957143
95 ADP BMA 0.647059 0.891892
96 3UK 0.647059 0.917808
97 OAD 0.647059 0.917808
98 9X8 0.647059 0.893333
99 25L 0.643678 0.957747
100 PR8 0.639535 0.848101
101 WAQ 0.639535 0.881579
102 LAD 0.639535 0.858974
103 B5V 0.639535 0.905405
104 DTA 0.637681 0.808219
105 V3L 0.6375 0.971429
106 3DH 0.633803 0.794521
107 3OD 0.632184 0.917808
108 FYA 0.632184 0.930556
109 BIS 0.632184 0.906667
110 TXA 0.632184 0.905405
111 1ZZ 0.632184 0.8375
112 ME8 0.632184 0.8375
113 NB8 0.632184 0.87013
114 MTA 0.628571 0.794521
115 3AM 0.625 0.956522
116 EP4 0.623188 0.773333
117 9SN 0.617977 0.87013
118 M2T 0.614286 0.753247
119 JB6 0.613636 0.881579
120 KMQ 0.611111 0.905405
121 FA5 0.611111 0.905405
122 B5Y 0.611111 0.893333
123 B5M 0.611111 0.893333
124 H1Q 0.607595 0.929577
125 MYR AMP 0.606742 0.814815
126 G5A 0.604938 0.776471
127 XAH 0.604396 0.8375
128 4UV 0.597826 0.893333
129 71V 0.597403 0.906667
130 ATP A 0.593407 0.929577
131 ATP A A A 0.593407 0.929577
132 PAP 0.592593 0.957143
133 G3A 0.591398 0.894737
134 2AM 0.589041 0.942857
135 5X8 0.5875 0.783784
136 6RE 0.586667 0.779221
137 6C6 0.585366 0.905405
138 G5P 0.585106 0.894737
139 AFH 0.585106 0.858974
140 4UU 0.585106 0.893333
141 GA7 0.585106 0.905405
142 7D3 0.584416 0.878378
143 A5A 0.583333 0.804878
144 TSB 0.581395 0.795181
145 AMP DBH 0.580645 0.891892
146 2A5 0.580247 0.891892
147 TAD 0.578947 0.858974
148 GTA 0.578947 0.860759
149 DQV 0.578947 0.930556
150 DSH 0.578947 0.74359
151 6IA 0.578313 0.858974
152 SSA 0.576471 0.776471
153 AMZ 0.575342 0.888889
154 C2R 0.575342 0.876712
155 7D4 0.575 0.878378
156 PGS 0.575 0.857143
157 ZAS 0.573333 0.786667
158 ATR 0.573171 0.942857
159 LAQ 0.572917 0.8375
160 AAM 0.571429 1
161 PPS 0.571429 0.848101
162 A3N 0.571429 0.783784
163 J7C 0.571429 0.789474
164 AIR 0.571429 0.927536
165 52H 0.569767 0.776471
166 54H 0.569767 0.785714
167 VMS 0.569767 0.785714
168 7MD 0.568421 0.8375
169 ARG AMP 0.568421 0.82716
170 AR6 AR6 0.568421 0.916667
171 YLP 0.56701 0.817073
172 48N 0.56701 0.87013
173 OVE 0.565789 0.90411
174 UPA 0.565657 0.881579
175 2SA 0.564706 0.905405
176 S4M 0.564103 0.682353
177 5CA 0.563218 0.776471
178 53H 0.563218 0.776471
179 8X1 0.563218 0.75
180 6V0 0.561224 0.87013
181 NAX 0.561224 0.848101
182 4UW 0.561224 0.858974
183 TXD 0.561224 0.881579
184 UP5 0.561224 0.893333
185 NAI 0.561224 0.881579
186 DND 0.561224 0.905405
187 NIA 0.56 0.820513
188 D5M 0.558442 0.902778
189 DA 0.558442 0.902778
190 NWW 0.557143 0.757143
191 MAO 0.556962 0.777778
192 AHZ 0.556701 0.814815
193 TXE 0.555556 0.881579
194 TYM 0.555556 0.905405
195 ITT 0.555556 0.915493
196 OMR 0.555556 0.82716
197 5AD 0.552239 0.768116
198 A2R 0.551724 0.957747
199 LPA AMP 0.55102 0.814815
200 DSZ 0.550562 0.776471
201 NSS 0.550562 0.776471
202 LSS 0.550562 0.758621
203 YLC 0.55 0.8375
204 L3W 0.55 0.905405
205 YLB 0.55 0.817073
206 AP0 0.55 0.87013
207 4TC 0.55 0.87013
208 P5A 0.549451 0.741573
209 J4G 0.549451 0.918919
210 139 0.54902 0.848101
211 O02 0.547619 0.894737
212 A4P 0.544554 0.819277
213 NVA LMS 0.544444 0.75
214 GJV 0.544304 0.769231
215 7D7 0.544118 0.763889
216 9K8 0.543478 0.711111
217 A7D 0.54321 0.797297
218 AF3 ADP 3PG 0.54 0.835443
219 ALF ADP 3PG 0.54 0.835443
220 6K6 0.539326 0.957143
221 IOT 0.539216 0.829268
222 LEU LMS 0.538462 0.747126
223 A3G 0.538462 0.797297
224 A5D 0.535714 0.808219
225 NAD IBO 0.534653 0.916667
226 7MC 0.534653 0.817073
227 NAD TDB 0.534653 0.916667
228 YLA 0.533981 0.817073
229 T5A 0.533981 0.817073
230 ADJ 0.533981 0.82716
231 GSU 0.532609 0.776471
232 KAA 0.532609 0.75
233 7RA 0.531646 0.985507
234 SFG 0.53012 0.77027
235 SAH 0.529412 0.763158
236 HFD 0.529412 0.918919
237 JSQ 0.529412 0.918919
238 AYB 0.528846 0.807229
239 CNA 0.528846 0.905405
240 N6P 0.527473 0.942029
241 8BR 0.525 0.931507
242 F2R 0.52381 0.839506
243 80F 0.523364 0.817073
244 Y3J 0.521127 0.746479
245 YSA 0.520833 0.776471
246 7RP 0.518987 0.955882
247 NAD 0.518868 0.930556
248 BTX 0.518868 0.839506
249 COD 0.518868 0.788235
250 MHZ 0.518072 0.714286
251 SA8 0.517647 0.725
252 6AD 0.517241 0.883117
253 BT5 0.514019 0.829268
254 DZD 0.514019 0.858974
255 RMB 0.5125 0.898551
256 CUU 0.511905 0.943662
257 SAI 0.511628 0.753247
258 AV2 0.511364 0.890411
259 K2R 0.510638 0.878378
260 8PZ 0.510417 0.776471
261 K3K 0.510417 0.8
262 A3D 0.509259 0.917808
263 A3S 0.506024 0.808219
264 3AT 0.505747 0.943662
265 SAM 0.505747 0.707317
266 SMM 0.505618 0.702381
267 NA7 0.505376 0.931507
268 B1U 0.505155 0.733333
269 AMP NAD 0.504673 0.90411
270 4TA 0.504673 0.804878
271 5GP 0.5 0.905405
272 EEM 0.5 0.707317
273 NEC 0.5 0.743243
274 NO7 0.5 0.905405
275 G 0.5 0.905405
276 AAT 0.5 0.725
277 YLY 0.495495 0.807229
278 M24 0.495495 0.848101
279 7C5 0.494949 0.815789
280 A3T 0.494118 0.819444
281 DAT 0.494118 0.878378
282 FAI 0.493827 0.888889
283 P2P 0.493827 0.928571
284 1RB 0.493671 0.911765
285 NAE 0.491071 0.893333
286 D4F 0.491071 0.8375
287 NAJ PZO 0.490909 0.846154
288 KOY 0.490196 0.8
289 LQJ 0.489796 0.916667
290 TM1 0.489583 0.771084
291 PO4 PO4 A A A A PO4 0.489362 0.901408
292 A6D 0.489362 0.740741
293 QXP 0.48913 0.761905
294 V47 0.488889 0.780822
295 S7M 0.488889 0.707317
296 DTP 0.488636 0.878378
297 RBZ 0.4875 0.873239
298 101 0.4875 0.902778
299 NWQ 0.487179 0.736111
300 EAD 0.486957 0.848101
301 NAQ 0.486726 0.87013
302 4YB 0.485149 0.758621
303 K3E 0.484848 0.789474
304 NDE 0.483051 0.931507
305 38V 0.482456 0.860759
306 N0B 0.482456 0.817073
307 ZID 0.482456 0.917808
308 N5O 0.481481 0.76
309 WSA 0.480769 0.785714
310 KL2 0.480519 0.861111
311 RGT 0.479592 0.931507
312 ARU 0.478723 0.835443
313 GGZ 0.478261 0.8
314 JLN 0.47561 0.863014
315 ANZ 0.475248 0.820513
316 QQY 0.475 0.837838
317 ACK 0.475 0.885714
318 QXG 0.473684 0.752941
319 NAJ PYZ 0.473684 0.804878
320 S8M 0.473118 0.779221
321 AVV 0.473118 0.87013
322 GEK 0.473118 0.734177
323 3AD 0.472973 0.828571
324 P1H 0.470588 0.82716
325 N5A 0.46988 0.733333
326 R2V 0.46875 0.761905
327 0UM 0.468085 0.716049
328 RVP 0.467532 0.847222
329 649 0.466667 0.741573
330 Z5A 0.465517 0.776471
331 PMO 0.464286 0.873239
332 O05 0.463918 0.819277
333 SXZ 0.463918 0.707317
334 62X 0.463158 0.682353
335 K2H 0.463158 0.753247
336 QQX 0.4625 0.826667
337 KY2 0.462366 0.75
338 8Q2 0.462264 0.75
339 OK8 0.461538 0.853333
340 K2W 0.46 0.7375
341 2VA 0.45977 0.797297
342 IMP 0.458824 0.90411
343 CC5 0.458333 0.84058
344 K15 0.458333 0.698795
345 AS 0.457831 0.855263
346 DDS 0.455556 0.851351
347 V1N 0.455446 0.943662
348 NJP 0.454545 0.918919
349 K38 0.454545 0.776316
350 K2K 0.453608 0.734177
351 7DD 0.453488 0.957143
352 G7M 0.453488 0.87013
353 93A 0.453488 0.804878
354 3D1 0.453333 0.77027
355 3L1 0.453333 0.77027
356 KYB 0.452632 0.75
357 EO7 0.452381 0.785714
358 NDC 0.45082 0.87013
359 FB0 0.45082 0.781609
360 DZ4 0.450549 0.855263
361 0WD 0.45045 0.894737
362 NVA 2AD 0.449438 0.75641
363 26A 0.447368 0.76
364 2FA 0.447368 0.810811
365 2BA 0.447059 0.914286
366 CMP 0.447059 0.927536
367 D3Y 0.446809 0.786667
368 K3H 0.445545 0.746835
369 VRT 0.444444 0.766234
370 APU 0.444444 0.893333
371 KB1 0.444444 0.716049
372 KY5 0.444444 0.74359
373 SO8 0.444444 0.786667
374 FDA 0.443548 0.809524
375 PUA 0.443478 0.858974
376 ODP 0.441441 0.883117
377 6FA 0.44 0.817073
378 NX8 0.43956 0.7125
379 RP1 0.439024 0.864865
380 SP1 0.439024 0.864865
381 103 0.439024 0.861111
382 3NZ 0.438776 0.779221
383 KY8 0.438776 0.746835
384 7DT 0.438202 0.957143
385 NDP 0.436364 0.894737
386 NPW 0.436364 0.860759
387 MTP 0.434211 0.727273
388 FAD 0.433071 0.82716
389 SFD 0.433071 0.712766
390 FAS 0.433071 0.82716
391 TXP 0.432432 0.894737
392 IRN 0.432432 0.867647
393 NZQ 0.432432 0.883117
394 ZZB 0.432432 0.792683
395 KYE 0.431373 0.731707
396 62F 0.430769 0.8375
397 FNK 0.430769 0.781609
398 128 0.429907 0.752941
399 9BG 0.428571 0.87013
400 KXW 0.428571 0.725
401 6MD 0.428571 0.805556
402 PAX 0.428571 0.82716
403 1DA 0.428571 0.842857
404 SLU 0.426087 0.767442
405 PLP AAD 0.426087 0.75
406 XNP 0.424779 0.848101
407 HZ2 0.424528 0.728395
408 12D 0.424528 0.761905
409 5F1 0.423077 0.72973
410 DCA 0.422414 0.8
411 ETB 0.422414 0.809524
412 NWZ 0.422222 0.7
413 F0P 0.422018 0.725
414 ERJ 0.421687 0.777778
415 WMP 0.421053 0.864865
416 GUO 0.421053 0.864865
417 OZP 0.420561 0.725
418 U4Y 0.420561 0.734177
419 HY8 0.416667 0.728395
420 FAY 0.416667 0.8375
421 38Y 0.415929 0.804878
422 5J9 0.415842 0.728395
423 NAD BBN 0.415385 0.817073
424 COA 0.415254 0.8
425 0T1 0.415254 0.8
426 KH3 0.415094 0.690476
427 N01 0.413793 0.90411
428 FMP 0.413793 0.871429
429 RFL 0.413534 0.797619
430 NMN AMP PO4 0.412281 0.868421
431 NAD CJ3 0.409091 0.788235
432 Q34 0.409091 0.690476
433 Q2M 0.409091 0.707317
434 GDP 0.408602 0.893333
435 GP2 0.408602 0.858974
436 NAP 0.408333 0.944444
437 NOC 0.407895 0.760563
438 CNV FAD 0.407407 0.770115
439 2ER 0.405941 0.831169
440 1PR 0.405941 0.820513
441 P5F 0.405797 0.8
442 CAO 0.404959 0.772727
443 30N 0.404959 0.731183
444 TAP 0.404959 0.906667
445 COS 0.404959 0.781609
446 AMX 0.404959 0.809524
447 EU9 0.40367 0.681818
448 XMP 0.402299 0.891892
449 G2P 0.402062 0.858974
450 NA0 0.401639 0.931507
451 CMX 0.401639 0.8
452 SCO 0.401639 0.8
453 9JJ 0.40146 0.8375
454 Q2P 0.4 0.690476
455 N37 0.4 0.730769
456 F2N 0.4 0.790698
Ligand no: 3; Ligand: DP6; Similar ligands found: 9
No: Ligand ECFP6 Tc MDL keys Tc
1 DP6 1 1
2 PMV 0.731707 1
3 BHI 0.644444 0.878049
4 FM0 0.58 0.853659
5 P23 0.422222 0.794872
6 1CO 0.422222 0.625
7 IPR 0.416667 0.8
8 0CJ 0.411765 0.85
9 IPE 0.408163 0.785714
Similar Ligands (3D)
Ligand no: 1; Ligand: AGS; Similar ligands found: 27
No: Ligand Similarity coefficient
1 ADP ALF 0.9782
2 ADP AF3 0.9674
3 GDP AF3 0.9569
4 ALF GDP 0.9557
5 GDP ALF 0.9520
6 GDP BEF 0.9444
7 DBG 0.9424
8 BEF GDP 0.9401
9 DGT 0.9355
10 UTP 0.9231
11 CTP 0.9211
12 2KH 0.9090
13 DCP 0.9032
14 GH3 0.9015
15 TTP 0.8934
16 GDP MG 0.8916
17 Y9Z 0.8809
18 ALF 5GP 0.8802
19 NYZ 0.8703
20 IDP 0.8674
21 NX8 0.8652
22 D3T 0.8642
23 DGI 0.8617
24 8DG 0.8610
25 GP2 0.8595
26 DUP 0.8579
27 M7G 0.8576
Ligand no: 2; Ligand: AMP; Similar ligands found: 216
No: Ligand Similarity coefficient
1 IRP 0.9883
2 DI 0.9755
3 8OP 0.9715
4 IMU 0.9698
5 TKW 0.9696
6 MZP 0.9690
7 PFU 0.9673
8 5FU 0.9664
9 DG 0.9620
10 6MA 0.9618
11 6CG 0.9613
12 U5P 0.9607
13 DGP 0.9601
14 PSU 0.9555
15 C5P 0.9513
16 FDM 0.9499
17 TMP 0.9498
18 5BU 0.9493
19 QBT 0.9492
20 FNU 0.9488
21 8GM 0.9484
22 UFP 0.9484
23 NYM 0.9477
24 5HM 0.9472
25 6OG 0.9471
26 5CM 0.9461
27 16B 0.9451
28 FN5 0.9442
29 NCN 0.9424
30 C 0.9418
31 9L3 0.9417
32 Z8B 0.9410
33 UP6 0.9400
34 NMN 0.9397
35 H2U 0.9395
36 ICR 0.9389
37 BMP 0.9380
38 UMP 0.9373
39 U 0.9368
40 BRU 0.9365
41 CH 0.9364
42 BMQ 0.9360
43 MTH 0.9360
44 8OG 0.9356
45 MTM 0.9347
46 CNU 0.9342
47 MTI 0.9342
48 6SW 0.9342
49 D4M 0.9334
50 2DT 0.9334
51 UMC 0.9304
52 CAR 0.9298
53 5IU 0.9287
54 5HU 0.9283
55 O7E 0.9281
56 DCM 0.9270
57 KB7 0.9270
58 DU 0.9269
59 DC 0.9269
60 NUP 0.9238
61 7CH 0.9219
62 DDN 0.9211
63 MCF 0.9205
64 PCG 0.9201
65 O8M 0.9197
66 DUS 0.9192
67 U6M 0.9180
68 S5P 0.9167
69 DOC 0.9149
70 3F5 0.9146
71 6SX 0.9133
72 U4S 0.9101
73 35G 0.9100
74 N8M 0.9089
75 6CN 0.9083
76 CDP 0.9080
77 T3S 0.9079
78 U1S 0.9071
79 MTE 0.9067
80 U2S 0.9058
81 DBM 0.9053
82 BVP 0.9052
83 4X2 0.9040
84 ATM 0.9025
85 SB8 0.9022
86 INR 0.9008
87 UA2 0.9007
88 A8M 0.9006
89 IMH 0.9006
90 TAL 0.8998
91 SSI 0.8986
92 U3S 0.8983
93 1B6 0.8972
94 3Q1 0.8972
95 TBN 0.8968
96 NOS 0.8966
97 IXF 0.8952
98 AD3 0.8932
99 1BJ 0.8932
100 SU1 0.8927
101 43J 0.8924
102 6SY 0.8920
103 9ZS 0.8918
104 IDP 0.8918
105 6SZ 0.8915
106 JW5 0.8914
107 OMP 0.8905
108 CC7 0.8903
109 T7O 0.8893
110 6AU 0.8887
111 PRH 0.8871
112 HPR 0.8871
113 2GE 0.8871
114 3Q2 0.8869
115 FMC 0.8862
116 ARJ 0.8861
117 9DI 0.8859
118 GNH 0.8855
119 3Q0 0.8849
120 GMP 0.8848
121 FMB 0.8845
122 4EZ 0.8839
123 K8W 0.8831
124 UM3 0.8830
125 MI1 0.8828
126 5ID 0.8815
127 NVV 0.8812
128 HDU 0.8812
129 43G 0.8808
130 UDP 0.8793
131 CFE 0.8793
132 FTU 0.8791
133 HMK 0.8787
134 5FD 0.8778
135 DN8 0.8777
136 72H 0.8776
137 7CU 0.8776
138 2OM 0.8774
139 CZV 0.8771
140 FSB 0.8768
141 HGH 0.8760
142 DOI 0.8756
143 3BH 0.8754
144 XYP TRS XYP 0.8748
145 FGN 0.8746
146 5NB 0.8741
147 LRT 0.8737
148 M7G 0.8735
149 NYZ 0.8731
150 3RA 0.8725
151 MSS 0.8719
152 TXS 0.8712
153 8OD 0.8710
154 S1Z 0.8709
155 4ZK 0.8706
156 L0F 0.8706
157 IYX 0.8702
158 GOW 0.8702
159 EKH 0.8698
160 CQU 0.8694
161 KFS 0.8692
162 0NL 0.8691
163 T3P 0.8690
164 F2B 0.8690
165 4K9 0.8689
166 PWH 0.8686
167 CL9 0.8686
168 GQE 0.8681
169 P1S 0.8676
170 SNI 0.8676
171 9ST 0.8674
172 GAR 0.8673
173 566 0.8671
174 DGI 0.8669
175 9ME 0.8666
176 RVA 0.8664
177 H4H 0.8662
178 SBW 0.8659
179 9W8 0.8653
180 2HW 0.8653
181 BSB 0.8653
182 GNG 0.8644
183 TDI 0.8643
184 MDR 0.8641
185 6HW 0.8634
186 460 0.8634
187 T61 0.8631
188 C1Y 0.8627
189 HLN 0.8624
190 43H 0.8621
191 TYD 0.8615
192 IXE 0.8613
193 66P 0.8609
194 I0D 0.8609
195 MG7 0.8608
196 MHR 0.8608
197 JY5 0.8606
198 4UB 0.8600
199 CC2 0.8599
200 JZJ 0.8598
201 F13 0.8595
202 PDB 0.8588
203 517 0.8585
204 BHF 0.8579
205 IWH 0.8576
206 XYS AZI XYS 0.8571
207 9X0 0.8566
208 KKE 0.8563
209 9RK 0.8559
210 VAL TRP 0.8553
211 4F0 0.8553
212 IYZ 0.8549
213 FKJ 0.8547
214 361 0.8538
215 E44 0.8526
216 E3Y 0.8504
Ligand no: 3; Ligand: DP6; Similar ligands found: 3
No: Ligand Similarity coefficient
1 2P0 0.8803
2 BTN 0.8609
3 6KJ 0.8566
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5GMD; Ligand: AGS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5gmd.bio1) has 32 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5GMD; Ligand: AGS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5gmd.bio1) has 32 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5GMD; Ligand: AMP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 5gmd.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 5GMD; Ligand: AMP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5gmd.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 5GMD; Ligand: DP6; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 5gmd.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 5GMD; Ligand: DP6; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 5gmd.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
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