Receptor
PDB id Resolution Class Description Source Keywords
5HDJ 1.89 Å NON-ENZYME: OTHER STRUCTURE OF B. MEGATERIUM NFRA1 BACILLUS MEGATERIUM NITROREDUCTASE ENZYME DIMER OXIDOREDUCTASE
Ref.: FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF TWO B MEGATERIUM NITROREDUCTASES BIOTRANSFORMING THE HERB MESOTRIONE. BIOCHEM.J. V. 473 1443 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FMN B:401;
A:400;
 Valid;
Valid;
 none;
none;
 submit data
456.344 C17 H21 N4 O9 P Cc1cc...
EDO B:403;
B:402;
B:404;
 Invalid;
Invalid;
Invalid;
 none;
none;
none;
 submit data
62.068 C2 H6 O2 C(CO)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5HDJ 1.89 Å NON-ENZYME: OTHER STRUCTURE OF B. MEGATERIUM NFRA1 BACILLUS MEGATERIUM NITROREDUCTASE ENZYME DIMER OXIDOREDUCTASE
Ref.: FUNCTIONAL AND STRUCTURAL CHARACTERIZATION OF TWO B MEGATERIUM NITROREDUCTASES BIOTRANSFORMING THE HERB MESOTRIONE. BIOCHEM.J. V. 473 1443 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 5HDJ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 5HDJ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 5HDJ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 1F5V - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
3 1BKJ Kd = 0.17 uM FMN C17 H21 N4 O9 P Cc1cc2c(cc....
4 2BKJ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 1ZCH - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: FMN; Similar ligands found: 18
No: Ligand ECFP6 Tc MDL keys Tc
1 FMN 1 1
2 RBF 0.75641 0.876712
3 9O9 0.574468 0.934211
4 RS3 0.571429 0.831169
5 FAD 0.543307 0.876543
6 FAS 0.543307 0.876543
7 FAE 0.539062 0.865854
8 UBG 0.534351 0.888889
9 5DD 0.475248 0.972603
10 LFN 0.475 0.643836
11 C3F 0.473684 0.74359
12 CF4 0.463918 0.734177
13 FAY 0.446043 0.864198
14 FNR 0.444444 0.909091
15 RFL 0.442857 0.845238
16 4LS 0.411215 0.875
17 1VY 0.406593 0.769231
18 DLZ 0.404494 0.782051
Similar Ligands (3D)
Ligand no: 1; Ligand: FMN; Similar ligands found: 10
No: Ligand Similarity coefficient
1 7O6 0.9670
2 4X4 0.8996
3 4LU 0.8884
4 E2U 0.8865
5 HDF 0.8834
6 AFQ 0.8817
7 E2X 0.8805
8 E89 0.8698
9 1WJ 0.8673
10 FZZ 0.8606
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5HDJ; Ligand: FMN; Similar sites found with APoc: 2
This union binding pocket(no: 1) in the query (biounit: 5hdj.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 5J62 FMN 30.7359
2 5J62 FMN 30.7359
Pocket No.: 2; Query (leader) PDB : 5HDJ; Ligand: FMN; Similar sites found with APoc: 2
This union binding pocket(no: 2) in the query (biounit: 5hdj.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 5J62 FMN 30.7359
2 5J62 FMN 30.7359
APoc FAQ
Feedback