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Receptor
PDB id Resolution Class Description Source Keywords
5IE3 1.9 Å EC: 6.2.1.8 CRYSTAL STRUCTURE OF A PLANT ENZYME ARABIDOPSIS THALIANA ARABIDOPSIS OXALATE DEGRADATION LIGASE
Ref.: CRYSTAL STRUCTURES OF ARABIDOPSIS THALIANA OXALYL-C SYNTHETASE ESSENTIAL FOR OXALATE DEGRADATION MOL PLANT V. 9 1349 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
OXD A:602;
B:602;
Valid;
Valid;
none;
none;
Kd = 18.2 uM
90.035 C2 H2 O4 C(=O)...
AMP B:601;
A:601;
Valid;
Valid;
none;
none;
submit data
347.221 C10 H14 N5 O7 P c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5IE3 1.9 Å EC: 6.2.1.8 CRYSTAL STRUCTURE OF A PLANT ENZYME ARABIDOPSIS THALIANA ARABIDOPSIS OXALATE DEGRADATION LIGASE
Ref.: CRYSTAL STRUCTURES OF ARABIDOPSIS THALIANA OXALYL-C SYNTHETASE ESSENTIAL FOR OXALATE DEGRADATION MOL PLANT V. 9 1349 2016
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5IE0 - SRT C4 H6 O6 [C@H]([C@H....
2 5IE2 - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 5IE3 Kd = 18.2 uM OXD C2 H2 O4 C(=O)(C(=O....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5IE0 - SRT C4 H6 O6 [C@H]([C@H....
2 5IE2 - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 5IE3 Kd = 18.2 uM OXD C2 H2 O4 C(=O)(C(=O....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5IE0 - SRT C4 H6 O6 [C@H]([C@H....
2 5IE2 - ATP C10 H16 N5 O13 P3 c1nc(c2c(n....
3 5IE3 Kd = 18.2 uM OXD C2 H2 O4 C(=O)(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: OXD; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 OXD 1 1
2 MAK 0.6 0.647059
3 PYR 0.545455 0.642857
4 GLV 0.416667 0.75
Ligand no: 2; Ligand: AMP; Similar ligands found: 395
No: Ligand ECFP6 Tc MDL keys Tc
1 A 1 1
2 AMP 1 1
3 A2D 0.833333 0.943662
4 ABM 0.833333 0.943662
5 ADP 0.823529 0.971429
6 A12 0.808824 0.931507
7 AP2 0.808824 0.931507
8 BA3 0.808824 0.943662
9 SRA 0.80303 0.944444
10 AP5 0.797101 0.943662
11 B4P 0.797101 0.943662
12 HEJ 0.788732 0.971429
13 ATP 0.788732 0.971429
14 AT4 0.785714 0.931507
15 AN2 0.785714 0.957747
16 5FA 0.777778 0.971429
17 AQP 0.777778 0.971429
18 APC 0.777778 0.931507
19 CA0 0.774648 0.917808
20 M33 0.774648 0.930556
21 AU1 0.774648 0.944444
22 ADX 0.774648 0.848101
23 ACP 0.763889 0.944444
24 50T 0.763889 0.957747
25 25A 0.75641 0.971429
26 AR6 0.753425 0.943662
27 PRX 0.753425 0.917808
28 APR 0.753425 0.943662
29 ACQ 0.746667 0.944444
30 T99 0.746667 0.931507
31 TAT 0.746667 0.931507
32 SAP 0.743243 0.918919
33 AD9 0.743243 0.944444
34 AGS 0.743243 0.918919
35 RBY 0.743243 0.905405
36 ADV 0.743243 0.905405
37 ANP 0.723684 0.944444
38 ADP PO3 0.72 0.942857
39 6YZ 0.717949 0.944444
40 5AL 0.714286 0.930556
41 SON 0.712329 0.931507
42 LMS 0.710145 0.825
43 RAB 0.709677 0.842857
44 XYA 0.709677 0.842857
45 ADN 0.709677 0.842857
46 ATF 0.705128 0.931507
47 GAP 0.701299 0.891892
48 A22 0.7 0.957747
49 SRP 0.696203 0.905405
50 7D5 0.691176 0.902778
51 A3P 0.684932 0.971014
52 A2P 0.684932 0.956522
53 ADP ALF 0.683544 0.868421
54 ALF ADP 0.683544 0.868421
55 ADQ 0.682927 0.917808
56 MAP 0.679012 0.918919
57 ADP VO4 0.675 0.930556
58 VO4 ADP 0.675 0.930556
59 OOB 0.670732 0.930556
60 9ZA 0.670732 0.906667
61 8QN 0.670732 0.930556
62 5SV 0.670732 0.87013
63 9ZD 0.670732 0.906667
64 PTJ 0.670588 0.894737
65 AOC 0.666667 0.84507
66 PAJ 0.662651 0.858974
67 4AD 0.662651 0.893333
68 A3R 0.662651 0.881579
69 A1R 0.662651 0.881579
70 AMO 0.662651 0.905405
71 5N5 0.661538 0.816901
72 DAL AMP 0.658537 0.90411
73 IMO 0.657534 0.928571
74 AHX 0.654762 0.87013
75 00A 0.654762 0.881579
76 DLL 0.654762 0.930556
77 5AS 0.653333 0.776471
78 A4D 0.651515 0.816901
79 5CD 0.651515 0.828571
80 9X8 0.647059 0.893333
81 OAD 0.647059 0.917808
82 3UK 0.647059 0.917808
83 ADP BMA 0.647059 0.891892
84 25L 0.643678 0.957747
85 PR8 0.639535 0.848101
86 WAQ 0.639535 0.881579
87 LAD 0.639535 0.858974
88 B5V 0.639535 0.905405
89 DTA 0.637681 0.808219
90 V3L 0.6375 0.971429
91 3DH 0.633803 0.794521
92 BIS 0.632184 0.906667
93 ME8 0.632184 0.8375
94 3OD 0.632184 0.917808
95 FYA 0.632184 0.930556
96 NB8 0.632184 0.87013
97 1ZZ 0.632184 0.8375
98 TXA 0.632184 0.905405
99 MTA 0.628571 0.794521
100 3AM 0.625 0.956522
101 EP4 0.623188 0.773333
102 A A 0.62069 0.971429
103 9SN 0.617977 0.87013
104 M2T 0.614286 0.753247
105 JB6 0.613636 0.881579
106 YAP 0.611111 0.893333
107 B5Y 0.611111 0.893333
108 FA5 0.611111 0.905405
109 B5M 0.611111 0.893333
110 MYR AMP 0.606742 0.814815
111 G5A 0.604938 0.776471
112 XAH 0.604396 0.8375
113 4UV 0.597826 0.893333
114 71V 0.597403 0.906667
115 ATP A A A 0.593407 0.929577
116 PAP 0.592593 0.957143
117 G3A 0.591398 0.894737
118 2AM 0.589041 0.942857
119 5X8 0.5875 0.783784
120 6RE 0.586667 0.779221
121 6C6 0.585366 0.905405
122 AFH 0.585106 0.858974
123 4UU 0.585106 0.893333
124 G5P 0.585106 0.894737
125 GA7 0.585106 0.905405
126 7D3 0.584416 0.878378
127 A5A 0.583333 0.804878
128 TSB 0.581395 0.795181
129 AMP DBH 0.580645 0.891892
130 TYR AMP 0.580645 0.868421
131 2A5 0.580247 0.891892
132 DQV 0.578947 0.930556
133 DSH 0.578947 0.74359
134 GTA 0.578947 0.860759
135 TAD 0.578947 0.858974
136 6IA 0.578313 0.858974
137 SSA 0.576471 0.776471
138 AMZ 0.575342 0.888889
139 C2R 0.575342 0.876712
140 PGS 0.575 0.857143
141 7D4 0.575 0.878378
142 ZAS 0.573333 0.786667
143 ATR 0.573171 0.942857
144 LAQ 0.572917 0.8375
145 AAM 0.571429 1
146 J7C 0.571429 0.789474
147 A3N 0.571429 0.783784
148 PPS 0.571429 0.848101
149 AIR 0.571429 0.927536
150 52H 0.569767 0.776471
151 54H 0.569767 0.785714
152 VMS 0.569767 0.785714
153 AR6 AR6 0.568421 0.916667
154 ARG AMP 0.568421 0.82716
155 7MD 0.568421 0.8375
156 YLP 0.56701 0.817073
157 48N 0.56701 0.87013
158 OVE 0.565789 0.90411
159 UPA 0.565657 0.881579
160 2SA 0.564706 0.905405
161 S4M 0.564103 0.682353
162 5CA 0.563218 0.776471
163 53H 0.563218 0.776471
164 8X1 0.563218 0.75
165 UP5 0.561224 0.893333
166 NAI 0.561224 0.881579
167 6V0 0.561224 0.87013
168 NAX 0.561224 0.848101
169 4UW 0.561224 0.858974
170 DND 0.561224 0.905405
171 TXD 0.561224 0.881579
172 NXX 0.561224 0.905405
173 NIA 0.56 0.820513
174 D5M 0.558442 0.902778
175 DA 0.558442 0.902778
176 MAO 0.556962 0.777778
177 AHZ 0.556701 0.814815
178 OMR 0.555556 0.82716
179 ITT 0.555556 0.915493
180 TYM 0.555556 0.905405
181 TXE 0.555556 0.881579
182 5AD 0.552239 0.768116
183 A2R 0.551724 0.957747
184 LPA AMP 0.55102 0.814815
185 DSZ 0.550562 0.776471
186 NSS 0.550562 0.776471
187 LSS 0.550562 0.758621
188 AP0 0.55 0.87013
189 YLC 0.55 0.8375
190 4TC 0.55 0.87013
191 YLB 0.55 0.817073
192 P5A 0.549451 0.741573
193 139 0.54902 0.848101
194 A4P 0.544554 0.819277
195 NVA LMS 0.544444 0.75
196 GJV 0.544304 0.769231
197 7D7 0.544118 0.763889
198 9K8 0.543478 0.711111
199 A7D 0.54321 0.797297
200 AF3 ADP 3PG 0.54 0.835443
201 6K6 0.539326 0.957143
202 IOT 0.539216 0.829268
203 A3G 0.538462 0.797297
204 LEU LMS 0.538462 0.75
205 A5D 0.535714 0.808219
206 7MC 0.534653 0.817073
207 T5A 0.533981 0.817073
208 ADJ 0.533981 0.82716
209 YLA 0.533981 0.817073
210 GSU 0.532609 0.776471
211 KAA 0.532609 0.75
212 7RA 0.531646 0.985507
213 SFG 0.53012 0.77027
214 SAH 0.529412 0.763158
215 HFD 0.529412 0.918919
216 AYB 0.528846 0.807229
217 CNA 0.528846 0.905405
218 N6P 0.527473 0.942029
219 8BR 0.525 0.931507
220 F2R 0.52381 0.839506
221 80F 0.523364 0.817073
222 Y3J 0.521127 0.746479
223 YSA 0.520833 0.776471
224 7RP 0.518987 0.955882
225 BTX 0.518868 0.839506
226 NAD 0.518868 0.930556
227 COD 0.518868 0.788235
228 G A A A 0.518868 0.87013
229 MHZ 0.518072 0.714286
230 SA8 0.517647 0.725
231 6AD 0.517241 0.883117
232 DZD 0.514019 0.858974
233 BT5 0.514019 0.829268
234 RMB 0.5125 0.898551
235 SAI 0.511628 0.753247
236 AV2 0.511364 0.890411
237 8PZ 0.510417 0.776471
238 A3D 0.509259 0.917808
239 A3S 0.506024 0.808219
240 3AT 0.505747 0.943662
241 SAM 0.505747 0.707317
242 SMM 0.505618 0.702381
243 NA7 0.505376 0.931507
244 4TA 0.504673 0.804878
245 AMP NAD 0.504673 0.90411
246 EEM 0.5 0.707317
247 G 0.5 0.905405
248 NEC 0.5 0.743243
249 5GP 0.5 0.905405
250 AAT 0.5 0.725
251 YLY 0.495495 0.807229
252 M24 0.495495 0.848101
253 7C5 0.494949 0.815789
254 DAT 0.494118 0.878378
255 A3T 0.494118 0.819444
256 P2P 0.493827 0.928571
257 FAI 0.493827 0.888889
258 1RB 0.493671 0.911765
259 NAE 0.491071 0.893333
260 U A 0.490909 0.906667
261 NAJ PZO 0.490909 0.846154
262 A G 0.490741 0.881579
263 TM1 0.489583 0.771084
264 A A A 0.489362 0.90411
265 A6D 0.489362 0.740741
266 PO4 PO4 A A A A PO4 0.489362 0.901408
267 S7M 0.488889 0.707317
268 DTP 0.488636 0.878378
269 RBZ 0.4875 0.873239
270 101 0.4875 0.902778
271 EAD 0.486957 0.848101
272 NAQ 0.486726 0.87013
273 U A G G 0.486239 0.881579
274 4YB 0.485149 0.758621
275 NDE 0.483051 0.931507
276 ZID 0.482456 0.917808
277 N0B 0.482456 0.817073
278 WSA 0.480769 0.785714
279 RGT 0.479592 0.931507
280 ARU 0.478723 0.835443
281 GGZ 0.478261 0.8
282 JLN 0.47561 0.863014
283 ANZ 0.475248 0.820513
284 QQY 0.475 0.837838
285 ACK 0.475 0.885714
286 NAJ PYZ 0.473684 0.804878
287 S8M 0.473118 0.779221
288 GEK 0.473118 0.734177
289 AVV 0.473118 0.87013
290 3AD 0.472973 0.828571
291 A U 0.471698 0.868421
292 P1H 0.470588 0.82716
293 0UM 0.468085 0.716049
294 RVP 0.467532 0.847222
295 649 0.466667 0.741573
296 Z5A 0.465517 0.776471
297 PMO 0.464286 0.873239
298 SXZ 0.463918 0.707317
299 62X 0.463158 0.682353
300 QQX 0.4625 0.826667
301 8Q2 0.462264 0.75
302 2VA 0.45977 0.797297
303 IMP 0.458824 0.90411
304 K15 0.458333 0.698795
305 CC5 0.458333 0.84058
306 AS 0.457831 0.855263
307 DDS 0.455556 0.851351
308 V1N 0.455446 0.943662
309 NJP 0.454545 0.918919
310 7DD 0.453488 0.957143
311 93A 0.453488 0.804878
312 G7M 0.453488 0.87013
313 3L1 0.453333 0.77027
314 3D1 0.453333 0.77027
315 EO7 0.452381 0.785714
316 NDC 0.45082 0.87013
317 FB0 0.45082 0.781609
318 0WD 0.45045 0.894737
319 NVA 2AD 0.449438 0.75641
320 26A 0.447368 0.76
321 2FA 0.447368 0.810811
322 2BA 0.447059 0.914286
323 CMP 0.447059 0.927536
324 D3Y 0.446809 0.786667
325 KB1 0.444444 0.716049
326 APU 0.444444 0.893333
327 VRT 0.444444 0.766234
328 SO8 0.444444 0.786667
329 FDA 0.443548 0.809524
330 PUA 0.443478 0.858974
331 ODP 0.441441 0.883117
332 6FA 0.44 0.817073
333 103 0.439024 0.861111
334 RP1 0.439024 0.864865
335 SP1 0.439024 0.864865
336 3NZ 0.438776 0.779221
337 A C A C 0.438596 0.846154
338 7DT 0.438202 0.957143
339 NDP 0.436364 0.894737
340 NPW 0.436364 0.860759
341 MTP 0.434211 0.727273
342 FAS 0.433071 0.82716
343 SFD 0.433071 0.712766
344 FAD 0.433071 0.82716
345 IRN 0.432432 0.867647
346 ZZB 0.432432 0.792683
347 TXP 0.432432 0.894737
348 NZQ 0.432432 0.883117
349 62F 0.430769 0.8375
350 FNK 0.430769 0.781609
351 128 0.429907 0.752941
352 1DA 0.428571 0.842857
353 6MD 0.428571 0.805556
354 PAX 0.428571 0.82716
355 SLU 0.426087 0.767442
356 XNP 0.424779 0.848101
357 12D 0.424528 0.761905
358 5F1 0.423077 0.72973
359 ETB 0.422414 0.809524
360 DCA 0.422414 0.8
361 F0P 0.422018 0.725
362 WMP 0.421053 0.864865
363 GUO 0.421053 0.864865
364 FAY 0.416667 0.8375
365 38Y 0.415929 0.804878
366 5J9 0.415842 0.728395
367 COA 0.415254 0.8
368 0T1 0.415254 0.8
369 KH3 0.415094 0.690476
370 U A C C 0.413793 0.857143
371 N01 0.413793 0.90411
372 FMP 0.413793 0.871429
373 RFL 0.413534 0.797619
374 NMN AMP PO4 0.412281 0.868421
375 GP2 0.408602 0.858974
376 GDP 0.408602 0.893333
377 NAP 0.408333 0.944444
378 NOC 0.407895 0.760563
379 2ER 0.405941 0.831169
380 1PR 0.405941 0.820513
381 P5F 0.405797 0.8
382 CAO 0.404959 0.772727
383 TAP 0.404959 0.906667
384 30N 0.404959 0.731183
385 COS 0.404959 0.781609
386 AMX 0.404959 0.809524
387 XMP 0.402299 0.891892
388 G2P 0.402062 0.858974
389 APC G U 0.401709 0.833333
390 U A A U 0.401639 0.906667
391 CMX 0.401639 0.8
392 NA0 0.401639 0.931507
393 SCO 0.401639 0.8
394 9JJ 0.40146 0.8375
395 F2N 0.4 0.790698
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5IE3; Ligand: OXD; Similar sites found with APoc: 98
This union binding pocket(no: 1) in the query (biounit: 5ie3.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
1 3R4S SLB 1.3544
2 5KOD AMP 1.55642
3 5WXU FLC 1.67015
4 4Z7X 3CX 1.68067
5 4U8P UDP 1.75439
6 5K8P 6R8 1.88235
7 1KKR 2AS 1.93705
8 4EPM AMP 1.94553
9 3CXO 1N5 2.16867
10 3WMX THR 2.23464
11 2ITM XUL 2.27273
12 1JG9 GLC 2.72374
13 5GVR LMR 2.99145
14 3SJK LYS PRO VAL LEU ARG THR ALA 3.15789
15 4B2G V1N 3.30739
16 3WXL ADP 3.30739
17 2AWN ADP 3.41207
18 3UEC ALA ARG TPO LYS 3.42466
19 4PPF FLC 3.42857
20 6E1Q CFA 3.50195
21 4OKE AMP 3.57143
22 2OG2 MLI 3.89972
23 2CFC KPC 4
24 3TFC PEP 4.15584
25 2OYH GLY HIS ARG PRO 4.18006
26 5HC8 PIS 4.21456
27 3B9Q MLI 4.63576
28 5AHO TLA 4.7619
29 1X0P FAD 4.8951
30 5SWI BMA 5.44747
31 1G8S MET 5.65217
32 3N1S 5GP 5.88235
33 1RZM PEP 5.91716
34 2WTN FER 5.9761
35 5HVJ ANP 6.03175
36 4WJT NAG 6.58683
37 5WHU SIA GAL 6.71141
38 2J5V RGP 6.81199
39 5KR7 6X9 6.81199
40 4ZU3 4SD 7.04846
41 2B1Q TRE 7.393
42 1PVC ILE SER GLU VAL 7.56302
43 1MAI I3P 7.63359
44 1L5J TRA 7.7821
45 1ZHS NAG NAG BMA MAN MAN 8.84956
46 2RDG NDG FUC SIA GAL 9.18367
47 2PIE GLU LEU LYS TPO GLU ARG TYR 9.42029
48 1SQL GUN 10.274
49 2Y4O DLL 10.6095
50 1RV0 NDG 10.625
51 4M5S GLY GLU ARG THR ILE PRO ILE THR ARG GLU 11.4943
52 5YRV 5AD 12.4088
53 2VQZ MGT 12.6506
54 1XXA ARG 12.8205
55 1GXU 2HP 14.2857
56 4GR5 APC 15.1751
57 4DG8 AMP 18.677
58 5MST FUM 24.5136
59 5MST AMP 24.5136
60 4R0M FA5 25.5054
61 4OXI GAP 31.9066
62 5OE4 3UK 35.6265
63 3DHV DAL AMP 36.9141
64 5C5H 4YB 39.5143
65 5MSD BEZ 39.6887
66 5MSD AMP 39.6887
67 5HM3 649 40.0778
68 5EY9 5SV 40.0778
69 3KXW 1ZZ 40.2724
70 3C5E ATP 41.4397
71 4RLQ 3SK 41.6342
72 5N81 8Q2 41.6862
73 1AMU AMP 41.8288
74 2V7B BEZ 42.4125
75 5N9X ATP 42.607
76 5N9X 8QN 42.607
77 5N9X THR 42.607
78 5D6J ATP 42.8016
79 1PG4 COA 42.9961
80 1PG4 PRX 42.9961
81 3E7W AMP 43.3852
82 2D1S SLU 43.7743
83 3IES M24 43.7743
84 4D57 ARG AMP 44.358
85 3CW9 AMP 45.2381
86 1V25 ANP 45.3307
87 3NYQ AMP 45.3465
88 3NYQ MCA 45.3465
89 3O84 HTJ 45.5253
90 1MDB AMP DBH 45.9144
91 5WM2 AMP 46.1089
92 5WM2 SAL 46.1089
93 4FUT ATP 46.5209
94 4GXQ ATP 47.0817
95 1RY2 AMP 47.8599
96 5X8G S0N 48.4536
97 5BSR AMP 49.6109
98 5BSR COA 49.6109
Pocket No.: 2; Query (leader) PDB : 5IE3; Ligand: AMP; Similar sites found with APoc: 98
This union binding pocket(no: 2) in the query (biounit: 5ie3.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
1 3R4S SLB 1.3544
2 5KOD AMP 1.55642
3 5WXU FLC 1.67015
4 4Z7X 3CX 1.68067
5 4U8P UDP 1.75439
6 5K8P 6R8 1.88235
7 1KKR 2AS 1.93705
8 4EPM AMP 1.94553
9 3CXO 1N5 2.16867
10 3WMX THR 2.23464
11 2ITM XUL 2.27273
12 1JG9 GLC 2.72374
13 5GVR LMR 2.99145
14 3SJK LYS PRO VAL LEU ARG THR ALA 3.15789
15 4B2G V1N 3.30739
16 3WXL ADP 3.30739
17 2AWN ADP 3.41207
18 3UEC ALA ARG TPO LYS 3.42466
19 4PPF FLC 3.42857
20 6E1Q CFA 3.50195
21 4OKE AMP 3.57143
22 2OG2 MLI 3.89972
23 2CFC KPC 4
24 3TFC PEP 4.15584
25 2OYH GLY HIS ARG PRO 4.18006
26 5HC8 PIS 4.21456
27 3B9Q MLI 4.63576
28 5AHO TLA 4.7619
29 1X0P FAD 4.8951
30 5SWI BMA 5.44747
31 1G8S MET 5.65217
32 3N1S 5GP 5.88235
33 1RZM PEP 5.91716
34 2WTN FER 5.9761
35 5HVJ ANP 6.03175
36 4WJT NAG 6.58683
37 5WHU SIA GAL 6.71141
38 2J5V RGP 6.81199
39 5KR7 6X9 6.81199
40 4ZU3 4SD 7.04846
41 2B1Q TRE 7.393
42 1PVC ILE SER GLU VAL 7.56302
43 1MAI I3P 7.63359
44 1L5J TRA 7.7821
45 1ZHS NAG NAG BMA MAN MAN 8.84956
46 2RDG NDG FUC SIA GAL 9.18367
47 2PIE GLU LEU LYS TPO GLU ARG TYR 9.42029
48 1SQL GUN 10.274
49 2Y4O DLL 10.6095
50 1RV0 NDG 10.625
51 4M5S GLY GLU ARG THR ILE PRO ILE THR ARG GLU 11.4943
52 5YRV 5AD 12.4088
53 2VQZ MGT 12.6506
54 1XXA ARG 12.8205
55 1GXU 2HP 14.2857
56 4GR5 APC 15.1751
57 4DG8 AMP 18.677
58 5MST FUM 24.5136
59 5MST AMP 24.5136
60 4R0M FA5 25.5054
61 4OXI GAP 31.9066
62 5OE4 3UK 35.6265
63 3DHV DAL AMP 36.9141
64 5C5H 4YB 39.5143
65 5MSD BEZ 39.6887
66 5MSD AMP 39.6887
67 5HM3 649 40.0778
68 5EY9 5SV 40.0778
69 3KXW 1ZZ 40.2724
70 3C5E ATP 41.4397
71 4RLQ 3SK 41.6342
72 5N81 8Q2 41.6862
73 1AMU AMP 41.8288
74 2V7B BEZ 42.4125
75 5N9X ATP 42.607
76 5N9X 8QN 42.607
77 5N9X THR 42.607
78 5D6J ATP 42.8016
79 1PG4 COA 42.9961
80 1PG4 PRX 42.9961
81 3E7W AMP 43.3852
82 2D1S SLU 43.7743
83 3IES M24 43.7743
84 4D57 ARG AMP 44.358
85 3CW9 AMP 45.2381
86 1V25 ANP 45.3307
87 3NYQ AMP 45.3465
88 3NYQ MCA 45.3465
89 3O84 HTJ 45.5253
90 1MDB AMP DBH 45.9144
91 5WM2 AMP 46.1089
92 5WM2 SAL 46.1089
93 4FUT ATP 46.5209
94 4GXQ ATP 47.0817
95 1RY2 AMP 47.8599
96 5X8G S0N 48.4536
97 5BSR AMP 49.6109
98 5BSR COA 49.6109
Pocket No.: 3; Query (leader) PDB : 5IE3; Ligand: OXD; Similar sites found with APoc: 19
This union binding pocket(no: 3) in the query (biounit: 5ie3.bio2) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 5MB4 NAG 1.49626
2 3R75 PYR 1.55642
3 1FUR MLT 2.35546
4 3B8I OXL 2.78746
5 5ZI7 GLU 2.91829
6 3NKS ACJ 3.77358
7 1JJ7 ADP 3.84615
8 4FK7 P34 3.93013
9 1DZT TPE 4.37158
10 5LXB 7A9 4.54545
11 1G6H ADP 4.66926
12 1SNN 5RP 4.84582
13 2J9L ATP 4.86486
14 4U00 ADP 5.7377
15 2XZ9 PYR 6.17284
16 1XX6 ADP 7.32984
17 2Z8L NAG FUC SIA GAL 10.5769
18 2PAR TMP 11.9403
19 1LOB MMA 27.0718
Pocket No.: 4; Query (leader) PDB : 5IE3; Ligand: AMP; Similar sites found with APoc: 19
This union binding pocket(no: 4) in the query (biounit: 5ie3.bio2) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 5MB4 NAG 1.49626
2 3R75 PYR 1.55642
3 1FUR MLT 2.35546
4 3B8I OXL 2.78746
5 5ZI7 GLU 2.91829
6 3NKS ACJ 3.77358
7 1JJ7 ADP 3.84615
8 4FK7 P34 3.93013
9 1DZT TPE 4.37158
10 5LXB 7A9 4.54545
11 1G6H ADP 4.66926
12 1SNN 5RP 4.84582
13 2J9L ATP 4.86486
14 4U00 ADP 5.7377
15 2XZ9 PYR 6.17284
16 1XX6 ADP 7.32984
17 2Z8L NAG FUC SIA GAL 10.5769
18 2PAR TMP 11.9403
19 1LOB MMA 27.0718
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