Receptor
PDB id Resolution Class Description Source Keywords
5K62 1.9 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF N-TERMINAL AMIDASE C187S SACCHAROMYCES CEREVISIAE (STRAIN CEN.PORGANISM_COMMON: BAKER-prime S YEAST N-END RULE NITRILASE SUPERFAMILY NTA1 HYDROLASE
Ref.: STRUCTURAL BASIS FOR DUAL SPECIFICITY OF YEAST N-TE AMIDASE IN THE N-END RULE PATHWAY. PROC. NATL. ACAD. SCI. V. 113 12438 2016 U.S.A.
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ASN VAL A:501;
 Valid;
 Atoms found LESS than expected: % Diff = 0.063;
 submit data
215.253 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5K62 1.9 Å NON-ENZYME: OTHER CRYSTAL STRUCTURE OF N-TERMINAL AMIDASE C187S SACCHAROMYCES CEREVISIAE (STRAIN CEN.PORGANISM_COMMON: BAKER-prime S YEAST N-END RULE NITRILASE SUPERFAMILY NTA1 HYDROLASE
Ref.: STRUCTURAL BASIS FOR DUAL SPECIFICITY OF YEAST N-TE AMIDASE IN THE N-END RULE PATHWAY. PROC. NATL. ACAD. SCI. V. 113 12438 2016 U.S.A.
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 5K66 - ASN GLU n/a n/a
2 5K61 - GLN C5 H10 N2 O3 C(CC(=O)N)....
3 5K60 - GLN VAL n/a n/a
4 5K63 - ASN GLY n/a n/a
5 5K62 - ASN VAL n/a n/a
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 5K66 - ASN GLU n/a n/a
2 5K61 - GLN C5 H10 N2 O3 C(CC(=O)N)....
3 5K60 - GLN VAL n/a n/a
4 5K63 - ASN GLY n/a n/a
5 5K62 - ASN VAL n/a n/a
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 5K66 - ASN GLU n/a n/a
2 5K61 - GLN C5 H10 N2 O3 C(CC(=O)N)....
3 5K60 - GLN VAL n/a n/a
4 5K63 - ASN GLY n/a n/a
5 5K62 - ASN VAL n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: ASN VAL; Similar ligands found: 6
No: Ligand ECFP6 Tc MDL keys Tc
1 ASN VAL 1 1
2 GLN VAL 0.619048 0.848485
3 IVA VAL VAL STA ALA STA 0.463415 0.65625
4 ASN GLU 0.428571 0.777778
5 ASN GLY 0.418605 0.75
6 ILE ILE 0.413043 0.647059
Similar Ligands (3D)
Ligand no: 1; Ligand: ASN VAL; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5K62; Ligand: ASN VAL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5k62.bio1) has 14 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback