Receptor
PDB id Resolution Class Description Source Keywords
5KSO 2.25 Å EC: 3.6.5.- HMIRO1 C-DOMAIN GDP-PI COMPLEX P3121 CRYSTAL FORM HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PO4 A:702;
Invalid;
none;
submit data
94.971 O4 P [O-]P...
GDP A:701;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5KSP 2.16 Å EC: 3.6.5.- HMIRO1 C-DOMAIN GDP COMPLEX C2221 CRYSTAL FORM HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5KSP; Ligand: GDP; Similar sites found: 550
This union binding pocket(no: 1) in the query (biounit: 5ksp.bio1) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4WOP CTP 0.00002317 0.53425 None
2 3IIJ ADP 0.00001402 0.51949 None
3 1HTW ADP 0.0001015 0.49086 None
4 2BEK ATP 0.001299 0.47461 None
5 4FCW ADP 0.0004199 0.46262 None
6 5TIV A3P 0.003237 0.45999 None
7 4RZ3 ADP 0.001015 0.45237 None
8 4LJ9 ACP 0.0007307 0.44451 None
9 2ZTS ADP 0.01152 0.43179 None
10 1JBW ACQ 0.02703 0.40275 None
11 1SVK ALF GDP 0.000000913 0.62001 1.05263
12 1Y3A GDP 0.000001003 0.60412 1.05263
13 1TAD ALF 0.000003601 0.58878 1.05263
14 1TAD GDP 0.000003601 0.58878 1.05263
15 1BH2 GSP 0.000007189 0.57411 1.05263
16 2OM2 GDP 0.000002087 0.51321 1.05263
17 2IXE ATP 0.0008126 0.46324 1.05263
18 3NHB ADP 0.0001034 0.45004 1.05263
19 3Q9L ATP 0.000782 0.4237 1.05263
20 3W5J GDP 0.000001137 0.6243 1.57895
21 2HF9 GSP 0.000002176 0.59289 1.57895
22 5H56 TYD 0.0002125 0.50391 1.57895
23 5H56 ADP 0.0002125 0.50391 1.57895
24 5J1J ANP 0.0002199 0.4923 1.57895
25 4WEI GLC GAL 0.0006655 0.48414 1.57895
26 1F9V ADP 0.00001978 0.47982 1.57895
27 4FRZ ADP 0.00002955 0.47152 1.57895
28 2J5V PCA 0.03675 0.40094 1.57895
29 1ZD9 GDP 0.0000001762 0.63132 1.59574
30 1S8F GDP 0.00000001394 0.51881 1.69492
31 4BQS K2Q 0.001312 0.47194 1.70455
32 4BQS ADP 0.001312 0.47194 1.70455
33 1Z0J GTP 0.00000008192 0.66416 1.76471
34 1YVD GNP 0.00000005938 0.66832 1.77515
35 1U8Z GDP 0.00000005059 0.66609 1.78571
36 1O3Y GTP 0.0000002928 0.62967 1.80723
37 1J2J GTP 0.00000008758 0.53347 1.80723
38 4B47 GDP 0.00000003962 0.66847 2.10526
39 3ZS9 ADP ALF 0.00007442 0.52084 2.10526
40 3BOS CDP 0.00006737 0.48859 2.10526
41 2OBM ADP 0.0005419 0.48393 2.10526
42 3ZFD ANP 0.0001805 0.48222 2.10526
43 4MKG AP5 0.001147 0.47969 2.10526
44 1ZIN AP5 0.001456 0.47444 2.10526
45 4TMK T5A 0.001889 0.46148 2.10526
46 4IOK ADP 0.01181 0.44239 2.10526
47 4IOK XPO 0.0178 0.42866 2.10526
48 3BFX A3P 0.0004696 0.42585 2.10526
49 2WOJ ADP ALF 0.0001002 0.40581 2.10526
50 4E5N NAD 0.02705 0.40274 2.10526
51 3DKP ADP 0.001195 0.43493 2.44898
52 2C78 GNP 0.0000001191 0.64546 2.63158
53 2C77 GNP 0.0000001119 0.64373 2.63158
54 2BVN GNP 0.00000009859 0.63636 2.63158
55 4J0Q GDP 0.00000001547 0.63521 2.63158
56 1RE0 GDP 0.0000001681 0.59399 2.63158
57 3T1O GDP 0.000001625 0.57656 2.63158
58 3T12 GDP ALF 0.000004221 0.57182 2.63158
59 1NHX FTB 0.001836 0.47359 2.63158
60 1NHX PEP 0.001852 0.47238 2.63158
61 2ZE7 DST 0.001034 0.46545 2.63158
62 3VX3 ADP 0.0007154 0.4617 2.63158
63 1Z83 AP5 0.00301 0.45143 2.63158
64 4XGU ADP 0.0003631 0.44505 2.63158
65 4PJ3 ANP 0.001696 0.4397 2.63158
66 3TBK ANP 0.0005347 0.43865 2.63158
67 2ZE7 AMP 0.006943 0.42382 2.63158
68 1D2N ANP 0.0004698 0.41695 2.63158
69 2GWH A3P 0.001543 0.41243 2.63158
70 2QG6 NMN 0.00003926 0.41031 2.63158
71 4KBF AMP 0.004887 0.40257 2.63158
72 1VHT BA3 0.001402 0.44116 2.75229
73 4QM7 GTP 0.00005286 0.49411 2.92398
74 4ZKD GDP 0.0000003897 0.63135 3.15789
75 1DAR GDP 0.0000004186 0.5892 3.15789
76 5GOE GDP 0.0000008065 0.571 3.15789
77 2XT3 ADP 0.00001225 0.56612 3.15789
78 3FWY ADP 0.00001795 0.53425 3.15789
79 4YDS ATP 0.00004666 0.52821 3.15789
80 3B5J 12D 0.000173 0.50002 3.15789
81 2QZ4 ADP 0.0001225 0.49 3.15789
82 2Y65 ADP 0.000003685 0.48952 3.15789
83 2VVG ADP 0.000001733 0.4842 3.15789
84 4D81 ADP 0.0001985 0.48297 3.15789
85 3BFV ADP 0.0002337 0.48029 3.15789
86 3COB ADP 0.000008636 0.47821 3.15789
87 3EWA ANP 0.0001645 0.47145 3.15789
88 1G3Q ADP 0.0002758 0.47098 3.15789
89 1ION ADP 0.0006087 0.45788 3.15789
90 3FKQ ATP 0.004368 0.45133 3.15789
91 3B7G ANP 0.0009447 0.44649 3.15789
92 2Z5F A3P 0.001886 0.44392 3.15789
93 4GBM A3P 0.0002886 0.41509 3.15789
94 1OYY AGS 0.008045 0.40804 3.15789
95 1QXA GLY GLY GLY 0.02505 0.40475 3.15789
96 4U5X GNP 0.000000006076 0.70005 3.37079
97 1TQ4 GDP 0.00000009061 0.64806 3.68421
98 1S9D GDP 0.0000009017 0.58478 3.68421
99 1JJ7 ADP 0.0000132 0.57453 3.68421
100 3E70 GDP 0.00005774 0.50208 3.68421
101 2RGX AP5 0.0005358 0.49874 3.68421
102 5WRI A3P 0.0003796 0.47896 3.68421
103 5WRJ A3P 0.0005673 0.47453 3.68421
104 2W58 ADP 0.000008473 0.45936 3.68421
105 1IHU AF3 0.00006641 0.43865 3.68421
106 4PX9 ADP 0.0009239 0.43155 3.68421
107 1IHU ADP 0.00007384 0.42939 3.68421
108 3BER AMP 0.005861 0.40573 3.68421
109 1Q3Q ANP 0.02049 0.40377 3.68421
110 2X77 GDP 0.00000005823 0.63926 3.7037
111 1NRJ GTP 0.000005756 0.56284 3.79747
112 1MR3 G3D 0.000001548 0.57404 3.8674
113 2KIN ADP 0.0000006422 0.4976 4
114 1FQJ GDP 0.000003031 0.58119 4.08163
115 1FQK GDP 0.00000709 0.47426 4.08163
116 2A9K GDP 0.00000001832 0.67399 4.21053
117 5CK5 GDP 0.0000007382 0.56885 4.21053
118 4XTR ATP 0.00003497 0.53044 4.21053
119 4XVU ATP 0.00003562 0.53006 4.21053
120 4XTR ADP 0.00002575 0.52957 4.21053
121 3ZQ6 ADP ALF 0.0002948 0.49187 4.21053
122 4E03 ADP 0.0002132 0.4761 4.21053
123 2ZR9 DTP 0.0002677 0.4636 4.21053
124 1P72 ADP 0.001638 0.46321 4.21053
125 4P32 ADP 0.001477 0.4509 4.21053
126 3H86 AP5 0.003648 0.44853 4.21053
127 2JAQ DCP 0.002422 0.4425 4.21053
128 1YTM ATP 0.0001126 0.44009 4.21053
129 1XPJ TLA 0.0117 0.43499 4.21053
130 1U0J ADP 0.001585 0.42204 4.21053
131 1J99 AND 0.02927 0.40214 4.21053
132 2IYL GDP 0.00007117 0.49167 4.22535
133 5BQ5 ADP BEF 0.0002317 0.46373 4.2328
134 1Y63 ADP 0.0002613 0.46321 4.34783
135 3P4X ADP 0.0004063 0.44961 4.35835
136 1KO8 6PG 0.0006222 0.46455 4.57143
137 1M2O GNP 0.000000234 0.6396 4.73684
138 1ZCB GDP 0.0000008915 0.61157 4.73684
139 1D2E GDP 0.0000000405 0.60855 4.73684
140 3AB3 GDP 0.000001759 0.58718 4.73684
141 1GOT GDP 0.000002221 0.58507 4.73684
142 5L3V GDP 0.00001594 0.53083 4.73684
143 5G41 AP5 0.0002939 0.51539 4.73684
144 2FAH GDP 0.00005173 0.51009 4.73684
145 5KDO GDP 0.000002887 0.50892 4.73684
146 5N69 ADP 0.0000614 0.50663 4.73684
147 5IRN ADP 0.00007277 0.5032 4.73684
148 1NJF AGS 0.0001261 0.50171 4.73684
149 1NJF ADP 0.0001377 0.49534 4.73684
150 5M7P ADP 0.0001481 0.49386 4.73684
151 1GP2 GDP 0.000003171 0.48967 4.73684
152 5TSH ANP 0.000106 0.48015 4.73684
153 3FB4 AP5 0.001723 0.47074 4.73684
154 5LB3 ADP 0.0001392 0.46929 4.73684
155 5GJC ATP 0.0003853 0.45501 4.73684
156 5L3R GCP 0.00001296 0.4547 4.73684
157 5TSH ADP 0.0001247 0.45004 4.73684
158 5X40 ACP 0.001784 0.44885 4.73684
159 4YMU ATP 0.00038 0.44734 4.73684
160 5VGR GDP 0.0002657 0.44099 4.73684
161 4A4Z ANP 0.005549 0.41564 4.73684
162 5MZN ADP 0.001772 0.41327 4.73684
163 3ZL8 ADP 0.0123 0.40531 4.73684
164 3MKH FAD 0.035 0.40136 4.73684
165 5K5Z ANP 0.0002133 0.49492 5.09554
166 4QRH 0O2 0.001653 0.44663 5.2381
167 3WY9 GDP 0.000000008803 0.69996 5.26316
168 2QN6 GDP 0.00000001051 0.69625 5.26316
169 3U6B GDP 0.0000000138 0.69055 5.26316
170 3WYA GDP 0.00000001616 0.6496 5.26316
171 2HCJ GDP 0.000000009954 0.64313 5.26316
172 5JBQ GDP 0.00000002777 0.6395 5.26316
173 4G5G GDP 0.00000002868 0.63892 5.26316
174 4RD0 GDP 0.0000001838 0.6365 5.26316
175 1D8T GDP 0.0000000377 0.63373 5.26316
176 3U6K GDP 0.00000003857 0.63362 5.26316
177 2RCN GDP 0.00000007841 0.62141 5.26316
178 3EC1 GDP 0.000001368 0.5765 5.26316
179 4R98 GNH 0.0000009641 0.57292 5.26316
180 2OFW ADX 0.0002317 0.51356 5.26316
181 4R43 GDP 0.00006458 0.50652 5.26316
182 4AG5 ADP 0.0001698 0.50523 5.26316
183 2DPY ADP 0.0001445 0.50388 5.26316
184 1FP6 ADP 0.0000714 0.50359 5.26316
185 2CHG ANP 0.0001752 0.48801 5.26316
186 1IN4 ADP 0.0002035 0.48737 5.26316
187 4OI4 ATP 0.0003494 0.48269 5.26316
188 5HR5 ADP 0.0002751 0.47886 5.26316
189 4R2I ANP 0.0000851 0.47294 5.26316
190 2Q2Y ADP 0.001565 0.47285 5.26316
191 2Q2Y MKR 0.001554 0.47187 5.26316
192 1R0X ATP 0.0001318 0.46647 5.26316
193 1T8U A3P 0.0006954 0.46442 5.26316
194 5I34 GDP 0.0004274 0.46227 5.26316
195 2VF7 ADP 0.0005076 0.45885 5.26316
196 5HR5 FLC 0.004229 0.44282 5.26316
197 1G6H ADP 0.00002916 0.44186 5.26316
198 3KJI ADP 0.00842 0.4348 5.26316
199 5MEX PAP 0.003794 0.42762 5.26316
200 5MEX SZZ 0.01138 0.42714 5.26316
201 1X8J A3P 0.0152 0.42374 5.26316
202 2B8T THM 0.009139 0.4132 5.26316
203 1ZJ6 G3D 0.0000001504 0.62039 5.34759
204 4KVG GTP 0.0000000524 0.67094 5.35714
205 1ZUI SKM 0.004056 0.44743 5.35714
206 3X1Z GNP 0.0000001067 0.66106 5.38922
207 4HDQ GNP 0.0000001341 0.6538 5.38922
208 4HDO GNP 0.0000001037 0.50289 5.38922
209 2PEZ GGZ 0.0001294 0.51771 5.58659
210 2PEZ DAT 0.0001294 0.51771 5.58659
211 4NON GDP 0.0000002137 0.6464 5.78947
212 1VG8 GNP 0.0000002185 0.64352 5.78947
213 2J59 GTP 0.0000001594 0.64229 5.78947
214 3VMF GTP 0.0000004717 0.62491 5.78947
215 3WXM GTP 0.0000004809 0.62451 5.78947
216 1KK1 GNP 0.00000006726 0.6098 5.78947
217 1G7C 5GP 0.000005015 0.55864 5.78947
218 2FNA ADP 0.00002636 0.53401 5.78947
219 4HSE ADP 0.00001407 0.53015 5.78947
220 3IO3 ADP 0.0009442 0.48731 5.78947
221 3A4M ADP 0.00002166 0.48664 5.78947
222 2BIF SIN 0.001145 0.48303 5.78947
223 2BIF ANP 0.0006949 0.48303 5.78947
224 4NU0 AP5 0.0009551 0.48134 5.78947
225 1T5C ADP 0.000002195 0.47802 5.78947
226 5IFS ADP 0.0002371 0.47677 5.78947
227 2IS6 ADP 0.0002121 0.46662 5.78947
228 1OXV ANP 0.0001784 0.46068 5.78947
229 1JJV ATP 0.00005289 0.4602 5.78947
230 3DC4 ADP 0.0001187 0.4579 5.78947
231 2WHX ADP 0.00007765 0.45194 5.78947
232 3QKT ANP 0.001739 0.45116 5.78947
233 1YQT ADP 0.0002122 0.43929 5.78947
234 1XX6 ADP 0.0002314 0.43348 5.78947
235 2FSH ANP 0.00115 0.42994 5.78947
236 1EK0 GNP 0.0000002784 0.49561 5.88235
237 3H4S ADP 0.000005226 0.48319 5.92593
238 1VG1 GDP 0.00000005412 0.64072 5.94595
239 1YZG GDP 0.0000002033 0.6144 6.14525
240 5MVR ADP 0.00005392 0.49324 6.17284
241 3F8K COA 0.01854 0.40164 6.25
242 2CBZ ATP 0.000002223 0.61804 6.31579
243 1G7S GDP 0.0000001825 0.61655 6.31579
244 4Q1A 2XZ 0.0005944 0.54839 6.31579
245 4Q1A UDP 0.0005944 0.54839 6.31579
246 5L3S GNP 0.00002373 0.54071 6.31579
247 5L3W GDP 0.00006585 0.50242 6.31579
248 1BG2 ADP 0.0000006952 0.49517 6.31579
249 1F5N GNP 0.000346 0.4885 6.31579
250 2B8W ALF 5GP 0.0004395 0.47985 6.31579
251 2GDJ ANP 0.0001311 0.47597 6.31579
252 1R6B ADP 0.0002197 0.4755 6.31579
253 3FYH ADP 0.0005848 0.47389 6.31579
254 1IWE IMP 0.008154 0.4693 6.31579
255 2C04 GCP 0.0004784 0.46764 6.31579
256 5IRR GSP 0.00001811 0.46687 6.31579
257 5LTJ ADP 0.0003601 0.46568 6.31579
258 4TTQ ATP 0.0002428 0.4655 6.31579
259 3DZD ADP 0.0001638 0.46083 6.31579
260 2JLR ANP 0.0009911 0.45054 6.31579
261 1UPT GTP 0.0000005394 0.61428 6.43275
262 1R4A GNP 0.0000002225 0.63806 6.66667
263 2Y8E GNP 0.0000000634 0.51694 6.70391
264 1OFU GDP 0.004182 0.42755 6.72269
265 3E5H GNP 0.00521 0.45816 6.74157
266 3TK1 GDP 0.0000001033 0.58743 6.84211
267 4PPF FLC 0.000005006 0.5853 6.84211
268 2QEN ADP 0.000005979 0.55656 6.84211
269 2XTN GTP 0.00001949 0.54257 6.84211
270 4PFO ADP 0.00007849 0.51778 6.84211
271 4GOX A3P 0.00008861 0.51115 6.84211
272 1AZT GSP 0.000003205 0.44568 6.84211
273 2OZE AGS 0.01268 0.42965 6.84211
274 2GJ8 ALF GDP 0.0000007014 0.47569 6.97674
275 1MKY GDP 0.00000000739 0.66455 7.36842
276 3CNL GNP 0.0000000843 0.60622 7.36842
277 3CX8 GSP 0.000005288 0.58063 7.36842
278 4WZ6 ATP 0.00004732 0.53462 7.36842
279 4ZNL BEF ADP 0.00003731 0.51076 7.36842
280 2ZPA ADP 0.0001383 0.49525 7.36842
281 2ZFI ADP 0.00007118 0.48849 7.36842
282 3EZ2 ADP 0.000498 0.47085 7.36842
283 1S3G AP5 0.002147 0.46591 7.36842
284 5J1S ATP 0.001201 0.45888 7.36842
285 2PZE ATP 0.00002389 0.45755 7.36842
286 4V03 ADP 0.000648 0.45662 7.36842
287 4IEE AGS 0.00236 0.43826 7.36842
288 1F2U ATP 0.002698 0.44526 7.38255
289 1GUA GNP 0.00000009895 0.50331 7.40741
290 2WJG GDP 0.00000014 0.60991 7.44681
291 1VG0 GDP 0.0000000566 0.64755 7.89474
292 1VG9 GDP 0.00000005766 0.63946 7.89474
293 3GJ7 GDP 0.0000006992 0.59882 7.89474
294 3GJ8 GDP 0.000001343 0.57686 7.89474
295 3GJ4 GDP 0.0000008265 0.57574 7.89474
296 1JI0 ATP 0.0001403 0.50452 7.89474
297 1X6V ADP 0.0002957 0.49524 7.89474
298 3RLF ANP 0.0005352 0.47384 7.89474
299 2AWN ADP 0.000009716 0.44427 7.89474
300 1NST A3P 0.001897 0.43967 7.89474
301 1AQU A3P 0.002603 0.43324 7.89474
302 4YS0 ADP 0.001063 0.41956 7.89474
303 5EE5 GTP 0.000001345 0.59542 7.98122
304 3QF7 ANP 0.0008132 0.45909 8
305 3KTA AP5 0.0002603 0.47751 8.09249
306 3M1I GTP 0.000002249 0.59446 8.42105
307 3WYF GTP 0.000002558 0.59393 8.42105
308 1SQ5 ADP 0.000001752 0.57157 8.42105
309 4HI0 GDP 0.000003776 0.5715 8.42105
310 4BAS GNP 0.000004553 0.57026 8.42105
311 4LYA ATP 0.00008971 0.49331 8.42105
312 5I0H ADP BEF 0.0004999 0.47119 8.42105
313 5FTB ANP 0.0002419 0.4619 8.42105
314 1XKV ATP 0.0005013 0.46177 8.42105
315 1L2T ATP 0.001066 0.46137 8.42105
316 2CE7 ADP 0.005932 0.44031 8.42105
317 5FHD ADP ALF 0.0004299 0.41627 8.42105
318 2WJH GDP 0.0000003425 0.60403 8.43373
319 2WJH FLC 0.00001771 0.52872 8.43373
320 2WIC GNP 0.04731 0.40695 8.61423
321 3WYG GTP 0.000004513 0.45009 8.79121
322 1G16 GDP 0.0000005957 0.61223 8.82353
323 1ZC3 GNP 0.00000004964 0.6747 8.84956
324 3RAB GNP 0.00000004827 0.67266 8.87574
325 4PC3 GDP 0.0000001615 0.62641 8.94737
326 1JWY GDP 0.0000007678 0.59498 8.94737
327 2ODE ALF GDP 0.000003945 0.58684 8.94737
328 3DEF GDP 0.0000102 0.54283 8.94737
329 1WDT GTP 0.0000471 0.51724 8.94737
330 1JWY ADP 0.0001805 0.47942 8.94737
331 1H65 GDP 0.000005904 0.47607 8.94737
332 1LVG ADP 0.00005789 0.47102 8.94737
333 4QOS ADP 0.000207 0.4651 8.94737
334 1CS4 GSP 0.000007306 0.44438 8.94737
335 3BD9 A3P 0.003507 0.42038 8.94737
336 2VB6 ADP BEF 0.00008425 0.5122 9.39597
337 1PUJ GNP 0.0000001032 0.63543 9.47368
338 1SKQ GDP 0.00000002329 0.62752 9.47368
339 3UIE ANP 0.0001209 0.49025 9.47368
340 1W5T ANP 0.0003507 0.47847 9.47368
341 1W5T ADP 0.0003389 0.47463 9.47368
342 3T34 GDP 0.00002315 0.45334 9.47368
343 4JLV ADP 0.0008392 0.43346 9.47368
344 3ZIA ATP 0.00001117 0.53473 9.52381
345 3ZIA ADP 0.00001538 0.53454 9.52381
346 1B7T ADP 0.0004163 0.45182 9.61539
347 4NCN GTP 0.0000001873 0.63894 10
348 4TMZ GSP 0.0000003123 0.62833 10
349 3GJ0 GDP 0.0000006826 0.59931 10
350 4HAT GNP 0.000001992 0.59922 10
351 1IBR GNP 0.000001954 0.59742 10
352 4LC1 GDP 0.0000002652 0.59635 10
353 5BXQ GDP 0.0000008499 0.58596 10
354 3GJ3 GDP 0.0000005551 0.58291 10
355 4H1V GNP 0.000001856 0.5803 10
356 4WZA ACP 0.0007749 0.50561 10
357 4WZA ADP 0.0007749 0.50561 10
358 1NY5 ADP 0.00013 0.49407 10
359 1OS1 ATP 0.000389 0.48942 10
360 1OS1 PYR 0.0004195 0.48942 10
361 1OE0 TTP 0.0005445 0.47896 10
362 4KAX GTP 0.0000009068 0.60356 10.0592
363 2FH5 GTP 0.00000004972 0.56582 10.2703
364 3LRE ADP 0.00000455 0.59522 10.4225
365 1Z0K GTP 0.00000009641 0.53164 10.4651
366 3BC1 GNP 0.00000006689 0.66582 10.5263
367 2PL3 ADP 0.000526 0.46971 10.5263
368 3FVQ ATP 0.0007685 0.46236 10.5263
369 1F6B GDP 0.0000015 0.57466 10.6061
370 5H67 ATP 0.006227 0.40894 10.6383
371 1KK8 BEF ADP 0.0004573 0.43096 10.7914
372 1SVM ATP 0.001501 0.48102 11.0526
373 2ZPT A3P 0.007715 0.44922 11.0526
374 4U00 ADP 0.00004497 0.4374 11.0526
375 5XDR ADP 0.002237 0.42934 11.0526
376 3PCR GTP 0.0000008406 0.60779 11.1111
377 5DIF GNP 0.00000134 0.60536 11.5789
378 5UWU GNP 0.000001425 0.60407 11.5789
379 5UWP GNP 0.0000017 0.60257 11.5789
380 5UWI GNP 0.00000159 0.60176 11.5789
381 5UWR GNP 0.000001843 0.59866 11.5789
382 5DI9 GNP 0.000002076 0.59835 11.5789
383 5UWT GNP 0.000002131 0.5956 11.5789
384 5DHF GNP 0.000002136 0.59555 11.5789
385 3GJX GTP 0.000002364 0.59342 11.5789
386 5UWS GNP 0.000002683 0.59293 11.5789
387 1M7G ADX 0.0001879 0.50814 11.5789
388 1M7G ADP 0.0001712 0.50684 11.5789
389 1M7G AV2 0.00003029 0.49357 11.5789
390 5UWJ GNP 0.000001467 0.4709 11.5789
391 5UWQ GNP 0.000001634 0.47012 11.5789
392 5UWW GNP 0.000001694 0.4699 11.5789
393 5UWO GNP 0.000001813 0.46861 11.5789
394 5UWH GNP 0.000002398 0.46696 11.5789
395 4CLI 5P8 0.03636 0.40606 11.5789
396 1Z08 GNP 0.0000002635 0.63185 11.7647
397 1KAO GDP 0.00000009224 0.6412 11.976
398 1V8K ANP 0.0001126 0.49518 12.1053
399 3RC3 ANP 0.007724 0.41338 12.1053
400 4YLG GDP 0.0000002659 0.61972 12.1387
401 4DKX GDP 0.00000000708 0.69248 12.6316
402 2XTZ GSP 0.00000128 0.60401 12.6316
403 1UJ2 ADP 0.005985 0.45653 12.6316
404 1UJ2 C5P 0.006042 0.45631 12.6316
405 1OFH ADP 0.04269 0.41136 12.6437
406 1UKZ ADP 0.003785 0.44648 12.8079
407 1KSH GDP 0.00000008257 0.64997 13.1579
408 4KFU ACP 0.00001105 0.48829 13.1579
409 1TU3 GNP 0.00000008459 0.6609 13.4503
410 1R2Q GNP 0.00000009517 0.67671 13.5294
411 3AQ4 GDP 0.000000646 0.59141 13.587
412 5FG3 GDP 0.00000001049 0.64167 13.6842
413 4ZG4 VO4 ADP 0.0001551 0.49954 13.6842
414 3MJH GTP 0.00000002665 0.52706 13.6905
415 1YZQ GNP 0.00000005424 0.67284 14.1176
416 1UAD GNP 0.00000003047 0.68229 14.1414
417 1FNN ADP 0.00006986 0.5092 14.2105
418 4D0G GTP 0.00000004186 0.66704 14.2857
419 2XAU ADP 0.0008322 0.45161 14.7368
420 3MGB PAP 0.007959 0.4143 14.7368
421 4DCT GDP 0.00000004731 0.64339 15.2632
422 1W0J ADP 0.00001752 0.53192 15.2632
423 1Z6T ADP 0.00006534 0.50803 15.2632
424 2CK3 ADP 0.0001988 0.49439 15.2632
425 1W0J ADP BEF 0.000227 0.48514 15.2632
426 2CK3 ANP 0.0002456 0.48353 15.2632
427 2D7D ADP 0.0009819 0.43956 15.2632
428 4CVN ADP 0.00002761 0.53949 15.3285
429 3SFV GDP 0.00000002979 0.6709 15.4696
430 3TKL GTP 0.00000007554 0.66058 15.7895
431 5SZH GNP 0.000000241 0.64146 15.7895
432 1Z0F GDP 0.000000006477 0.68293 16.2011
433 1G3M PCQ 0.004849 0.44692 16.3158
434 1G3M A3P 0.004849 0.44692 16.3158
435 4LPS GDP 0.00000002693 0.65459 16.8421
436 1ZRH A3P 0.004209 0.42742 16.8421
437 1QSM ACO 0.02056 0.40234 17.1053
438 3NKV GNP 0.00000007109 0.51509 17.1429
439 3GJ5 GDP 0.000001253 0.57824 17.6471
440 1D5C GDP 0.00000002869 0.6649 17.9012
441 1X1R GDP 0.00000008573 0.50494 17.9775
442 1YZN GNP 0.0000001454 0.49737 18.3784
443 1Z0A GDP 0.000000008699 0.6813 18.3908
444 4P3Y GDP 0.00000002074 0.63058 18.6813
445 3A1S GDP 0.0000001009 0.62833 18.9474
446 5JCP GDP ALF 0.000000009877 0.61628 18.9474
447 1YRB GDP 0.0000003014 0.61383 19.4737
448 2EFE GNH 0.00000007254 0.64254 20.442
449 3T5G GDP 0.000000005722 0.68969 20.9945
450 2A5F GTP 0.0000002525 0.63542 21.1429
451 1XTQ GDP 0.00000002404 0.68153 21.4689
452 4MKF AP5 0.001082 0.4821 21.659
453 2W83 GTP 0.0000001873 0.63893 21.8182
454 3TNF GNP 0.0000001244 0.65782 22.4138
455 4LHW GNP 0.00000004103 0.52283 22.4138
456 3QBT GNP 0.00000007785 0.51375 22.4138
457 2A5J GDP 0.00000001933 0.64171 22.6316
458 3N5C GDP 0.0000002211 0.60072 22.8395
459 3REF GDP 0.00000000811 0.57479 23.1579
460 2GK6 ADP 0.004276 0.40332 23.1579
461 2EW1 GNP 0.0000001171 0.64869 23.3831
462 2V7Q ATP 0.00001818 0.5282 23.6842
463 2V7Q ADP 0.00007035 0.48941 23.6842
464 3RWO GDP 0.0000001064 0.6561 24.3243
465 1GRN GDP 0.000000005514 0.69836 24.7368
466 2NGR GDP 0.000000005325 0.68682 24.7368
467 4ITR GDP 0.00000002468 0.67144 24.7368
468 4DID GDP 0.00000001616 0.66475 24.7368
469 1A4R GNH 0.00000002342 0.60308 24.7368
470 1A4R GDP 0.00000001794 0.59232 24.7368
471 1NF3 GNP 0.00000002582 0.52516 24.7368
472 2FFQ GSP 0.00000004876 0.67508 25.731
473 2J0V GDP 0.000000006588 0.68259 25.7895
474 1WA5 GTP 0.000002043 0.43986 25.7895
475 4YC7 GNP 0.00000001029 0.696 25.9669
476 1I4D GDP 0.000000001674 0.73471 26.8421
477 1E96 GTP 0.00000001421 0.69828 26.8421
478 1GWN GTP 0.000000001757 0.729 27.3684
479 1OW3 GDP 0.000000006357 0.69547 27.3684
480 2W2X GSP 0.000000009653 0.69403 27.3684
481 1DS6 GDP 0.000000002882 0.68296 27.3684
482 5DI3 GNP 0.0000003667 0.52472 27.3684
483 4M9Q GNP 0.0000003179 0.52343 27.3684
484 1GOJ ADP 0.00000279 0.47694 27.3684
485 1MH1 GNP 0.000000004707 0.72427 27.4194
486 5IRC GDP 0.000000008963 0.6807 27.4194
487 3LXR GDP 0.000000004064 0.69654 27.5676
488 5HPY GDP 0.000000006512 0.69498 27.5676
489 4D0N GDP 0.000000001951 0.6895 27.5676
490 1KMQ GNP 0.00000001053 0.69866 27.7174
491 1G4U GDP 0.00000001836 0.59287 27.7174
492 3SBD GNP 0.00000001406 0.53328 27.8075
493 2GCO GNP 0.000000007135 0.69313 27.8947
494 2GCN GDP 0.00000001206 0.69272 27.8947
495 2ZEJ GDP 0.000008338 0.56689 27.8947
496 2BCG GDP 0.0000001142 0.56553 27.8947
497 1CXZ GSP 0.000000007186 0.70341 28.022
498 1M7B GTP 0.000000001809 0.72841 28.2609
499 4XOI GTP 0.000000007557 0.70858 28.3333
500 4V0K GDP 0.0000004978 0.49616 28.4024
501 2WKQ GTP 0.000000008271 0.70367 28.4211
502 1RYH GNP 0.00000001081 0.67694 28.4211
503 1VKJ A3P 0.001354 0.45073 28.4211
504 4XSH GSP 0.00000001031 0.68926 28.4916
505 2FJU GSP 0.00000001683 0.68262 28.6517
506 1TX4 ALF GDP 0.00000002188 0.55005 28.8136
507 1HE1 GDP 0.00000001516 0.58069 28.9773
508 5TB5 GDP 0.00000001141 0.67587 29.7297
509 5TAR GDP 0.00000001395 0.63109 29.7297
510 4DSU GDP 0.00000006127 0.67027 30
511 3PQC GDP 0.00000001939 0.66525 30
512 4ZI2 GNP 0.0000003173 0.62523 30
513 1WF3 GNP 0.000001408 0.60432 30
514 4GOJ GNP 0.0000002718 0.62843 30.1587
515 3Q85 GNP 0.00000003842 0.63342 30.7692
516 1KY3 GDP 0.0000004753 0.60465 30.7692
517 2G77 GDP 0.00000002706 0.66608 31.0526
518 3CPJ GDP 0.00000011 0.63415 31.0526
519 2F9L GDP 0.00000005267 0.5377 31.0526
520 2BME GNP 0.00000007016 0.66482 31.1828
521 1FZQ GDP 0.00000008853 0.61819 31.4917
522 1Z2A GDP 0.0000003137 0.51961 31.5476
523 2CJW GDP 0.00000005866 0.64936 31.5789
524 1SVI GDP 0.000000001642 0.67801 32.1053
525 5XCO GDP 0.0000000192 0.66934 32.1637
526 3Q72 GNP 0.00000000973 0.64533 32.5301
527 5O2T GSP 0.00000008407 0.50459 32.5444
528 5UFQ GNP 0.00000004641 0.67348 33.1325
529 1OIV GDP 0.00000002643 0.68527 33.1579
530 1OIX GDP 0.0000001062 0.65614 33.1579
531 1Z06 GNP 0.00000005208 0.66833 34.7368
532 2HT6 GDP 0.00000002475 0.6277 35.0575
533 5JCZ GDP 0.0000003174 0.54569 35.1955
534 4LX0 BEF GDP 0.00000008057 0.66451 35.5932
535 4C4P GNP 0.0000001183 0.65643 36.4162
536 2C5L GTP 0.00000005611 0.50915 36.4162
537 2HV8 GTP 0.00000004912 0.67229 36.6279
538 4K81 GTP 0.0000000569 0.67435 36.8421
539 2D7C GTP 0.0000001028 0.65682 37.1257
540 5E95 GDP 0.00000004775 0.59402 37.5
541 1LFD GNP 0.0000001176 0.654 37.7246
542 1CLU DBG 0.00000006224 0.69884 37.9518
543 2UZI GTP 0.00000004042 0.67638 37.9518
544 3KUD GDP 0.00000003108 0.67003 37.9518
545 3DDC GNP 0.0000001152 0.65699 37.9518
546 1NVU GTP 0.0000001224 0.65572 37.9518
547 1NVV GNP 0.0000001306 0.65434 37.9518
548 1WQ1 GDP 0.0000001102 0.64994 37.9518
549 5WDR GNP 0.00000006951 0.66762 39.7661
550 3DOE GTP 0.00000007362 0.53751 40.1042
Pocket No.: 2; Query (leader) PDB : 5KSP; Ligand: GDP; Similar sites found: 4
This union binding pocket(no: 2) in the query (biounit: 5ksp.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2D2I NAP 0.03894 0.41215 2.10526
2 3IUY AMP 0.008059 0.4038 7.89474
3 1P9B GDP 0.04175 0.4012 7.89474
4 3CH5 GDP 0.04933 0.41609 10
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