Receptor
PDB id Resolution Class Description Source Keywords
5KUT 1.69 Å EC: 3.6.5.- HMIRO2 C-TERMINAL GTPASE DOMAIN, GDP-BOUND HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG B:602;
A:602;
C:602;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GDP C:601;
A:601;
B:601;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5KUT 1.69 Å EC: 3.6.5.- HMIRO2 C-TERMINAL GTPASE DOMAIN, GDP-BOUND HOMO SAPIENS MIRO GTPASE PARKIN MITOCHONDRIA HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO PARKIN SUBSTRATE LYSINE TA FROM MINIMAL MIRO SUBSTRATES. SCI REP V. 6 33019 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 5KSP - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5KSO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5KSY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 5KUT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5KUT; Ligand: GDP; Similar sites found: 505
This union binding pocket(no: 1) in the query (biounit: 5kut.bio3) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3A1S GDP 0.000000007125 0.68103 None
2 1JJV ATP 0.00001387 0.56034 None
3 5MVR ADP 0.00001025 0.54406 None
4 1UPT GTP 0.0000001121 0.5383 None
5 2Y8E GNP 0.00000002122 0.52903 None
6 1YZQ GNP 0.00000001106 0.52524 None
7 2IL4 COA 0.003794 0.40192 None
8 1DAR GDP 0.0000001351 0.63234 1.5873
9 4MKF AP5 0.0002092 0.51831 1.5873
10 3UIE ANP 0.00001939 0.50999 1.5873
11 1VL0 NAI 0.01335 0.4115 1.5873
12 2O0J ADP 0.002699 0.41058 1.5873
13 1Z08 GNP 0.00000005198 0.53736 1.76471
14 1D5C GDP 0.000000002273 0.64176 1.85185
15 4YDS ATP 0.00001023 0.56086 2.1164
16 5H56 TYD 0.0000278 0.54724 2.1164
17 5H56 ADP 0.0000278 0.54724 2.1164
18 3RWO GDP 0.00000000999 0.53604 2.1164
19 3FWY ADP 0.000004083 0.51323 2.1164
20 4FCW ADP 0.0001464 0.48357 2.1164
21 4LJ9 ACP 0.0002336 0.4803 2.1164
22 4XGU ADP 0.00003626 0.47983 2.1164
23 3BER AMP 0.002249 0.4341 2.1164
24 2ZX2 RAM 0.006546 0.42813 2.1164
25 4DKX GDP 0.0000000008761 0.73509 2.6455
26 4LC1 GDP 0.00000001308 0.67996 2.6455
27 2XT3 ADP 0.0000005741 0.63809 2.6455
28 4PFO ADP 0.00003914 0.53235 2.6455
29 3BOS CDP 0.00004645 0.51324 2.6455
30 4ZNL BEF ADP 0.00006393 0.50005 2.6455
31 3ZFD ANP 0.00003826 0.49698 2.6455
32 5I34 GDP 0.00009082 0.49307 2.6455
33 4V03 ADP 0.00008339 0.48253 2.6455
34 3DZD ADP 0.0001318 0.4665 2.6455
35 5VGR GDP 0.00007957 0.46008 2.6455
36 4WEI GLC GAL 0.01233 0.41055 2.6455
37 2X77 GDP 0.000000008658 0.67716 3.1746
38 2VVG ADP 0.0000001458 0.67447 3.1746
39 2W58 ADP 0.0000002337 0.67151 3.1746
40 3H4S ADP 0.0000004286 0.64563 3.1746
41 1YRB GDP 0.000000007273 0.63936 3.1746
42 1F9V ADP 0.000001633 0.60794 3.1746
43 3W5J GDP 0.000003563 0.59763 3.1746
44 3COB ADP 0.0000003945 0.524 3.1746
45 4FRZ ADP 0.000002338 0.51223 3.1746
46 4E03 ADP 0.00005256 0.50395 3.1746
47 5LTJ ADP 0.0001733 0.48023 3.1746
48 3DKP ADP 0.0003928 0.4697 3.1746
49 5LTJ BEF 0.001935 0.46613 3.1746
50 1W5T ADP 0.0001802 0.45029 3.1746
51 1YTM ATP 0.00007172 0.44876 3.1746
52 1W5T ANP 0.0001003 0.44482 3.1746
53 1X6V ADP 0.00005102 0.40419 3.1746
54 1Y63 ADP 0.00001762 0.53301 3.26087
55 3WYA GDP 0.000000001027 0.73185 3.7037
56 3WY9 GDP 0.000000002278 0.72826 3.7037
57 4R98 GNH 0.0000004132 0.60954 3.7037
58 2WIC GNP 0.0000003898 0.60146 3.7037
59 1LVG ADP 0.000007265 0.56822 3.7037
60 4WZ6 ATP 0.0000161 0.55803 3.7037
61 4HSE ADP 0.000004496 0.55284 3.7037
62 2ZFI ADP 0.00001164 0.54147 3.7037
63 3B5J 12D 0.00002827 0.53899 3.7037
64 1H65 GDP 0.0000001729 0.52847 3.7037
65 5BQ5 ADP BEF 0.00002409 0.50623 3.7037
66 2Y65 ADP 0.000001772 0.5011 3.7037
67 2GK6 ADP 0.0002276 0.49411 3.7037
68 1XKV ATP 0.00005719 0.49031 3.7037
69 2XTZ GSP 0.0000004519 0.49022 3.7037
70 2J5V PCA 0.01541 0.42388 3.7037
71 4P32 ADP 0.0002236 0.41661 3.7037
72 4OHY ANP 0.0002164 0.40404 3.7037
73 1NRJ GTP 0.000001569 0.51691 3.79747
74 1FZQ GDP 0.000000008949 0.6877 3.8674
75 2BEK ATP 0.0001408 0.43023 3.89105
76 2VB6 ADP BEF 0.00002098 0.4478 4.02685
77 1BO4 COA 0.009443 0.40476 4.16667
78 5FG3 GDP 0.000000001966 0.73135 4.2328
79 1F6B GDP 0.0000004925 0.59681 4.2328
80 5L3V GDP 0.0000006672 0.57435 4.2328
81 3DC4 ADP 0.000008462 0.56494 4.2328
82 4GOJ GNP 0.00000005718 0.54485 4.2328
83 1NJF ADP 0.00002291 0.53196 4.2328
84 1NJF AGS 0.00002942 0.53174 4.2328
85 3BFV ADP 0.0000253 0.52563 4.2328
86 2IS6 ADP 0.00003474 0.51917 4.2328
87 2D2F ADP 0.000127 0.51387 4.2328
88 5GVR LMR 0.0001227 0.50754 4.2328
89 5GJC ATP 0.00009221 0.49926 4.2328
90 2PL3 ADP 0.0001706 0.49328 4.2328
91 2D7D ADP 0.0001618 0.48779 4.2328
92 4ZKD GDP 0.0000002403 0.48458 4.2328
93 1FNN ADP 0.00002379 0.47368 4.2328
94 1U0J ADP 0.000456 0.4727 4.2328
95 2VF7 ADP 0.000275 0.47104 4.2328
96 3VX3 ADP 0.0000922 0.45288 4.2328
97 1FWV SGA MAG FUC 0.01318 0.41593 4.47761
98 2A5F GTP 0.00000003265 0.53744 4.57143
99 1SKQ GDP 0.00000002479 0.67829 4.7619
100 4U00 ADP 0.000001185 0.63132 4.7619
101 1G6H ADP 0.000001268 0.62984 4.7619
102 3E70 GDP 0.000001535 0.5742 4.7619
103 2DPY ADP 0.000009519 0.56241 4.7619
104 2C77 GNP 0.0000001228 0.54873 4.7619
105 2C78 GNP 0.00000005699 0.54622 4.7619
106 5LB3 ADP 0.00006025 0.51508 4.7619
107 3TBK ANP 0.0001113 0.5095 4.7619
108 5IRN ADP 0.0000109 0.50853 4.7619
109 1XX6 ADP 0.0001698 0.50717 4.7619
110 2C04 GCP 0.00006267 0.47261 4.7619
111 2FNA ADP 0.00001052 0.46575 4.7619
112 1D2N ANP 0.0004402 0.41764 4.7619
113 2WOJ ADP ALF 0.00005137 0.41507 4.7619
114 4QRH 0O2 0.001083 0.40069 4.7619
115 2ZEJ GDP 0.0000000432 0.50759 4.8913
116 3N5C GDP 0.00000003633 0.65913 4.93827
117 3BD9 A3P 0.006636 0.40767 5
118 5WDR GNP 0.000000004414 0.53662 5.26316
119 1MKY GDP 0.0000000002495 0.76071 5.29101
120 2HCJ GDP 0.000000001358 0.73909 5.29101
121 3U6B GDP 0.000000001774 0.7335 5.29101
122 2J0V GDP 0.0000000006975 0.72724 5.29101
123 4J0Q GDP 0.000000002758 0.72426 5.29101
124 2QN6 GDP 0.000000003898 0.71701 5.29101
125 5JBQ GDP 0.000000003732 0.70554 5.29101
126 1D8T GDP 0.000000003932 0.70447 5.29101
127 4G5G GDP 0.000000003948 0.70439 5.29101
128 3U6K GDP 0.000000007989 0.69001 5.29101
129 1OW3 GDP 0.000000009878 0.68653 5.29101
130 4P3Y GDP 0.000000002036 0.67054 5.29101
131 4PC3 GDP 0.00000002389 0.62195 5.29101
132 2BVN GNP 0.00000002367 0.6186 5.29101
133 5JCP GDP ALF 0.00000002098 0.60507 5.29101
134 4KFU ACP 0.00000887 0.5705 5.29101
135 4RD0 GDP 0.00000002326 0.55839 5.29101
136 4LYA ATP 0.00001155 0.53408 5.29101
137 1FP6 ADP 0.000005492 0.52009 5.29101
138 2HF9 GSP 0.0000002131 0.5086 5.29101
139 2Q2Y ADP 0.0003366 0.50662 5.29101
140 2Q2Y MKR 0.0003311 0.50574 5.29101
141 4PX9 ADP 0.0001205 0.50057 5.29101
142 1BG2 ADP 0.0000005408 0.50055 5.29101
143 1Z6T ADP 0.000009164 0.49804 5.29101
144 2ZR9 DTP 0.0001027 0.49706 5.29101
145 4R2I ANP 0.0002005 0.49684 5.29101
146 5IFS ADP 0.00004297 0.49543 5.29101
147 5N69 ADP 0.00002446 0.49386 5.29101
148 1G3Q ADP 0.00009167 0.49288 5.29101
149 5X40 ACP 0.0003124 0.48501 5.29101
150 2ZPA ADP 0.00001536 0.48002 5.29101
151 1NY5 ADP 0.00006381 0.47301 5.29101
152 1ION ADP 0.0001596 0.47054 5.29101
153 2ZE7 DST 0.001444 0.45844 5.29101
154 1VHT BA3 0.0003303 0.45773 5.29101
155 5I0H ADP BEF 0.0000687 0.44403 5.29101
156 5K5Z ANP 0.00006964 0.43057 5.29101
157 2ZE7 AMP 0.005659 0.42811 5.29101
158 3RC3 ANP 0.008762 0.41073 5.29101
159 2GWH A3P 0.002868 0.40226 5.29101
160 5IRC GDP 0.00000002926 0.63312 5.37634
161 5HPY GDP 0.000000009704 0.61821 5.40541
162 1KMQ GNP 0.00000001948 0.55223 5.43478
163 3KTA AP5 0.00005017 0.47925 5.49451
164 4XSH GSP 0.000000009661 0.60335 5.58659
165 4U5X GNP 0.000000002512 0.62361 5.61798
166 1TX4 ALF GDP 0.00000004157 0.5436 5.64972
167 1M7G AV2 0.00002614 0.53256 5.6872
168 1KO8 6PG 0.00005116 0.46125 5.71429
169 4WOP CTP 0.00003572 0.45984 5.77778
170 1SVI GDP 0.0000000005601 0.75763 5.82011
171 3TK1 GDP 0.000000001319 0.75355 5.82011
172 1GWN GTP 0.00000001064 0.69203 5.82011
173 5UWT GNP 0.00000009432 0.6612 5.82011
174 1T5C ADP 0.000001174 0.62983 5.82011
175 5GOE GDP 0.00000009666 0.61061 5.82011
176 1PUJ GNP 0.00000004427 0.60892 5.82011
177 2PZE ATP 0.000003262 0.60128 5.82011
178 4AG5 ADP 0.000002349 0.60111 5.82011
179 1M7B GTP 0.000000005942 0.59411 5.82011
180 5TSH ADP 0.000004643 0.58552 5.82011
181 2WHX ADP 0.00002044 0.55329 5.82011
182 5TSH ANP 0.00001319 0.53891 5.82011
183 2OBM ADP 0.00008144 0.52655 5.82011
184 3P4X ADP 0.00001439 0.50848 5.82011
185 1R6B ADP 0.00004502 0.50702 5.82011
186 5DIF GNP 0.00000006393 0.50653 5.82011
187 5UWU GNP 0.0000000693 0.5058 5.82011
188 5UWI GNP 0.00000007038 0.50574 5.82011
189 5UWJ GNP 0.00000007199 0.50543 5.82011
190 5UWO GNP 0.00000007432 0.50509 5.82011
191 5UWW GNP 0.00000007525 0.5047 5.82011
192 5DHF GNP 0.00000008724 0.50341 5.82011
193 3M1I GTP 0.00000009526 0.50303 5.82011
194 5UWH GNP 0.00000009706 0.50262 5.82011
195 3VMF GTP 0.0000002051 0.49778 5.82011
196 5UWP GNP 0.00000007653 0.49573 5.82011
197 5DI9 GNP 0.00000009944 0.49342 5.82011
198 3WYF GTP 0.0000001159 0.49147 5.82011
199 5UWS GNP 0.0000001196 0.49111 5.82011
200 5FTB ANP 0.0001592 0.47032 5.82011
201 4JLV ADP 0.0008838 0.45884 5.82011
202 2JLR ANP 0.0003035 0.44708 5.82011
203 5FHD ADP ALF 0.00009343 0.43936 5.82011
204 3FVQ ATP 0.0001316 0.43411 5.82011
205 1AQU A3P 0.004568 0.42181 5.82011
206 2IXE ATP 0.0002156 0.41737 5.82011
207 1CLU DBG 0.0000000007558 0.45501 6.0241
208 3WYG GTP 0.0000003291 0.47972 6.04396
209 3T1O GDP 0.0000002193 0.59633 6.06061
210 5E95 GDP 0.00000000008727 0.69776 6.34921
211 2CBZ ATP 0.0000002683 0.66749 6.34921
212 3KUD GDP 0.0000000009834 0.62173 6.34921
213 2UZI GTP 0.0000000007601 0.57195 6.34921
214 1JI0 ATP 0.000007003 0.56901 6.34921
215 4K81 GTP 0.0000000002249 0.56837 6.34921
216 1YQT ADP 0.00001047 0.56796 6.34921
217 2C5L GTP 0.00000000112 0.55483 6.34921
218 4XOI GTP 0.00000002294 0.53886 6.34921
219 2OG2 MLI 0.00002949 0.52672 6.34921
220 5IRR GSP 0.0000004464 0.52031 6.34921
221 3B9Q MLI 0.00007264 0.5135 6.34921
222 4D81 ADP 0.00002137 0.49626 6.34921
223 1B7T ADP 0.000111 0.47719 6.34921
224 3CX8 GSP 0.0000004422 0.47023 6.34921
225 4PJ3 ANP 0.0004525 0.4455 6.34921
226 1OYY AGS 0.002858 0.4292 6.34921
227 3BFX A3P 0.001249 0.41079 6.34921
228 4UXU MLK 0.01585 0.40716 6.34921
229 2GMV UN8 0.0001955 0.40529 6.34921
230 2GJ8 ALF GDP 0.0000001087 0.49368 6.39535
231 1KK8 BEF ADP 0.00007069 0.4624 6.47482
232 4TTQ ATP 0.0001306 0.49216 6.51163
233 3T12 GDP ALF 0.0000004687 0.51744 6.61765
234 4ZI2 GNP 0.00000006127 0.54391 6.76692
235 2AWN ADP 0.0000001099 0.69569 6.87831
236 3LRE ADP 0.000000135 0.67737 6.87831
237 1JJ7 ADP 0.0000008585 0.63958 6.87831
238 1WQ1 GDP 0.000000003182 0.57907 6.87831
239 3DEF GDP 0.0000002351 0.57769 6.87831
240 1JWY GDP 0.0000003522 0.57515 6.87831
241 1LFD GNP 0.000000002107 0.55641 6.87831
242 1UKZ ADP 0.0002192 0.50789 6.87831
243 1JWY ADP 0.00005459 0.50319 6.87831
244 5MZN ADP 0.0007311 0.469 6.87831
245 3T34 GDP 0.00001151 0.46537 6.87831
246 1IN4 ADP 0.00003592 0.46459 6.87831
247 5L3R GCP 0.000005714 0.46213 6.87831
248 1WQ1 AF3 0.004417 0.44047 6.87831
249 4ZG4 VO4 ADP 0.00004085 0.43512 6.87831
250 2W68 SIA GAL BGC 0.01734 0.4033 6.87831
251 4B47 GDP 0.00000000325 0.72082 6.88705
252 4KVG GTP 0.000000001297 0.5638 7.14286
253 3T5G GDP 0.000000002319 0.68042 7.18232
254 1KAO GDP 0.00000000186 0.64478 7.18563
255 4HDO GNP 0.000000003902 0.53813 7.18563
256 1GUA GNP 0.000000004621 0.53666 7.18563
257 4HDQ GNP 0.00000000559 0.53513 7.18563
258 3X1Z GNP 0.000000005602 0.52392 7.18563
259 4LPS GDP 0.0000000002986 0.74411 7.40741
260 3CNL GNP 0.000000008224 0.70139 7.40741
261 4PPF FLC 0.000002861 0.60978 7.40741
262 4H1V GNP 0.0000005309 0.55206 7.40741
263 4R43 GDP 0.00001513 0.53612 7.40741
264 4XTR ADP 0.00001303 0.48382 7.40741
265 2XAU ADP 0.0002626 0.46028 7.40741
266 4XVU ATP 0.00001725 0.45202 7.40741
267 4XTR ATP 0.00001866 0.45114 7.40741
268 5J1J ANP 0.00004522 0.44151 7.40741
269 4YS0 ADP 0.0004698 0.43303 7.40741
270 3RLF ANP 0.0001292 0.41853 7.40741
271 1NST A3P 0.001735 0.41095 7.40741
272 4NON GDP 0.00000001983 0.50981 7.69231
273 2RCN GDP 0.00000000102 0.73198 7.93651
274 3GJ3 GDP 0.000000007341 0.69174 7.93651
275 3GJ0 GDP 0.000000007876 0.6903 7.93651
276 3GJ4 GDP 0.00000001115 0.68321 7.93651
277 4DCT GDP 0.000000008789 0.67686 7.93651
278 5BXQ GDP 0.00000001259 0.66972 7.93651
279 5EE5 GTP 0.00000006454 0.54622 7.93651
280 1IBR GNP 0.00000007706 0.5045 7.93651
281 4HAT GNP 0.00000009823 0.49324 7.93651
282 2FAH GDP 0.00004011 0.48645 7.93651
283 1WDT GTP 0.00001347 0.48539 7.93651
284 3B7G ANP 0.0001795 0.47952 7.93651
285 1WA5 GTP 0.0000001039 0.46909 7.93651
286 3KJI ADP 0.001947 0.46693 7.93651
287 4TMK T5A 0.001636 0.46458 7.93651
288 1R0X ATP 0.0002154 0.45886 7.93651
289 2ZPT A3P 0.01227 0.43864 7.93651
290 4OI4 ATP 0.0004859 0.40254 7.93651
291 1KK1 GNP 0.00000003022 0.67414 8.46561
292 3CPJ GDP 0.000000001558 0.66743 8.46561
293 3NHB ADP 0.000007226 0.57602 8.46561
294 1SQ5 ADP 0.000002101 0.56796 8.46561
295 3EWA ANP 0.00005368 0.51029 8.46561
296 1M2O GNP 0.0000002723 0.49928 8.46561
297 2FSH ANP 0.0004385 0.47352 8.46561
298 5XDR ADP 0.0002754 0.47101 8.46561
299 3CV2 OXL 0.01074 0.40546 8.46561
300 5AHO TLA 0.01481 0.40335 8.46561
301 1R4A GNP 0.000000004168 0.56388 8.48485
302 1EK0 GNP 0.00000005309 0.51386 8.82353
303 3IIJ ADP 0.000001257 0.58685 8.88889
304 1S9D GDP 0.00000001678 0.664 8.99471
305 3GJX GTP 0.0000001384 0.65313 8.99471
306 1RE0 GDP 0.00000001757 0.63333 8.99471
307 3WXM GTP 0.0000003261 0.63264 8.99471
308 3AB3 GDP 0.0000008654 0.60174 8.99471
309 1ZCB GDP 0.00000009159 0.51681 8.99471
310 2XTN GTP 0.0000003502 0.51248 8.99471
311 2GDJ ANP 0.0001723 0.48651 8.99471
312 4A4Z ANP 0.003669 0.4241 8.99471
313 3FYH ADP 0.0001765 0.40602 8.99471
314 5CK5 GDP 0.000000007899 0.70223 9.52381
315 1GOJ ADP 0.0000002005 0.66811 9.52381
316 1D2E GDP 0.00000001367 0.6278 9.52381
317 4QOS ADP 0.00008785 0.48105 9.52381
318 4GOX A3P 0.0000989 0.4291 9.52381
319 4KVA GTP 0.0000004506 0.41471 9.52381
320 4Z7X 3CX 0.02247 0.40598 9.52381
321 4GBM A3P 0.0004827 0.40504 9.52381
322 5L3W GDP 0.000002375 0.55167 10.0529
323 3IO3 ADP 0.000007606 0.52842 10.0529
324 2QEN ADP 0.000002546 0.52228 10.0529
325 4IEE AGS 0.0002489 0.48537 10.0529
326 4RZ3 ADP 0.00004997 0.47253 10.0529
327 5L3S GNP 0.000002985 0.47205 10.0529
328 5M7P ADP 0.00007677 0.45455 10.0529
329 4KBF AMP 0.001686 0.44532 10.0529
330 5E5U MLI 0.007049 0.44313 10.0529
331 3IUY AMP 0.004639 0.4193 10.0529
332 5L3S G 0.01457 0.40878 10.0529
333 4KAX GTP 0.0000002417 0.5269 10.0592
334 1J2J GTP 0.00000003944 0.54386 10.241
335 2J59 GTP 0.00000009716 0.53188 10.241
336 1O3Y GTP 0.0000001069 0.53133 10.241
337 2W83 GTP 0.0000001127 0.53053 10.303
338 4LHW GNP 0.000000001208 0.56527 10.3448
339 3QBT GNP 0.000000002762 0.55194 10.3448
340 3TNF GNP 0.000000002634 0.53155 10.3448
341 1TQ4 GDP 0.000000001739 0.61506 10.582
342 3ZIA ATP 0.00002218 0.5211 10.582
343 3ZIA ADP 0.00001715 0.50017 10.582
344 1AZT GSP 0.0000003212 0.47199 10.582
345 1CS4 GSP 0.000003725 0.4516 10.582
346 2ZJ5 ADP 0.01862 0.4025 10.582
347 2ODE ALF GDP 0.0000002866 0.47288 10.6383
348 3PQC GDP 0.000000004607 0.66791 11.1111
349 3EC1 GDP 0.00000006392 0.63741 11.1111
350 2IYL GDP 0.00000143 0.58423 11.1111
351 4UZI IMD 0.001416 0.47521 11.1111
352 3ZQ6 ADP ALF 0.00004108 0.42048 11.1111
353 2BME GNP 0.000000004812 0.54604 11.2903
354 1G7C 5GP 0.000001806 0.57947 11.6402
355 1NVV GNP 0.000000002076 0.54599 11.6402
356 1NVU GTP 0.000000002342 0.54482 11.6402
357 3PCR GTP 0.0000001392 0.52623 11.6402
358 2CHG ANP 0.00003771 0.47527 11.6402
359 5WRI A3P 0.0008924 0.40297 11.6402
360 3AQ4 GDP 0.0000000111 0.67221 11.9565
361 2FH5 GTP 0.000000008445 0.58954 12.1693
362 3Q9L ATP 0.00007419 0.46495 12.1693
363 4YMU ATP 0.00002847 0.53077 12.6984
364 1SVK ALF GDP 0.0000001413 0.47692 12.7479
365 3GJ8 GDP 0.00000001859 0.66197 13.0435
366 1OXV ANP 0.00001983 0.53834 13.2275
367 3EZ2 ADP 0.00005593 0.51663 13.2275
368 4YLG GDP 0.00000000585 0.62582 13.2948
369 1V8K ANP 0.00003108 0.52143 13.7566
370 2QZ4 ADP 0.00002198 0.50809 13.7566
371 1Z0K GTP 0.000000003704 0.57268 13.9535
372 4QM7 GTP 0.00001265 0.53977 14.0351
373 3DDC GNP 0.00000000227 0.54607 14.1104
374 4CVN ADP 0.000001286 0.60547 14.2857
375 4BQS ADP 0.000009359 0.54591 15.3409
376 3QF7 ANP 0.000205 0.43586 15.873
377 2WJG GDP 0.00000003646 0.65905 15.9574
378 1G7S GDP 0.0000000397 0.64688 16.4021
379 4NCN GTP 0.0000001097 0.52623 16.4021
380 4TMZ GSP 0.0000001705 0.52113 16.4021
381 1IHU AF3 0.000006634 0.47403 16.4021
382 1IHU ADP 0.000007464 0.4634 16.4021
383 5HR5 ADP 0.0001037 0.45491 16.4021
384 4HI0 GDP 0.0000001149 0.55707 17.9894
385 1TAD GDP 0.0000003488 0.47112 17.9894
386 1TAD ALF 0.0000003488 0.47112 17.9894
387 2WJH GDP 0.0000003092 0.60606 18.0723
388 2WJH FLC 0.000008292 0.54392 18.0723
389 5UWQ GNP 0.00000007328 0.5048 18.1818
390 4BAS GNP 0.0000008785 0.60421 18.5185
391 5UWR GNP 0.00000007688 0.50487 18.5185
392 1YZG GDP 0.00000001866 0.66189 18.9944
393 5H67 ATP 0.001979 0.43178 19.0476
394 3H86 AP5 0.0009576 0.47747 19.5767
395 1HTW ADP 0.00001167 0.53387 19.6203
396 2X7I CIT 0.001802 0.43862 20.1058
397 3GJ7 GDP 0.000000008548 0.68863 20.4082
398 2KIN ADP 0.0000003725 0.65561 21
399 3A4M ADP 0.000002303 0.59294 21.6931
400 2V7Q ATP 0.000007121 0.52916 21.6931
401 2V7Q ADP 0.00002495 0.52592 21.6931
402 1W0J ADP 0.00002296 0.49604 21.6931
403 1W0J ADP BEF 0.00005352 0.45958 21.6931
404 2CK3 ANP 0.00006368 0.45741 21.6931
405 2CK3 ADP 0.00004101 0.43953 21.6931
406 2EFE GNH 0.000000001971 0.66436 22.0994
407 1YVD GNP 0.000000002306 0.55526 23.0769
408 1GOT GDP 0.0000002758 0.53238 23.2804
409 1WF3 GNP 0.0000001653 0.48894 23.2804
410 2FFQ GSP 0.00000001505 0.52213 23.3918
411 1Z0J GTP 0.000000004413 0.53811 23.5294
412 2G77 GDP 0.000000006465 0.62325 23.8095
413 2OM2 GDP 0.000000282 0.54246 23.8095
414 5KDO GDP 0.0000004887 0.5351 23.8095
415 1Y3A GDP 0.0000001157 0.53394 23.8095
416 1GP2 GDP 0.000000419 0.51531 23.8095
417 1BH2 GSP 0.0000007789 0.46311 23.8095
418 2G77 AF3 0.02093 0.40093 23.8095
419 2GCN GDP 0.00000001428 0.68924 24.3386
420 2GCO GNP 0.00000001047 0.61768 24.3386
421 1FQJ GDP 0.0000002752 0.51783 24.3386
422 1FQK GDP 0.0000006918 0.50662 24.3386
423 4D0N GDP 0.0000000008778 0.70442 24.8649
424 3LXR GDP 0.000000001911 0.68424 24.8649
425 2NGR GDP 0.000000002837 0.69934 24.8677
426 1GRN GDP 0.000000004887 0.62908 24.8677
427 1A4R GNH 0.000000006267 0.6252 24.8677
428 1A4R GDP 0.000000005422 0.61082 24.8677
429 4ITR GDP 0.00000001594 0.59421 24.8677
430 1NF3 GNP 0.00000002856 0.52318 24.8677
431 4DID GDP 0.000000004904 0.68846 24.8705
432 1CXZ GSP 0.00000001524 0.56984 25.2747
433 1DS6 GDP 0.0000000004494 0.7487 25.3968
434 1RYH GNP 0.000000002309 0.68055 25.3968
435 3RAB GNP 0.000000009618 0.70645 25.4438
436 4V0K GDP 0.00000003231 0.5302 25.4438
437 3MJH GTP 0.000000006275 0.54322 25.5952
438 1I4D GDP 0.0000000002017 0.77901 25.9259
439 1VG8 GNP 0.000000004729 0.72417 25.9259
440 1VG0 GDP 0.0000000007956 0.67861 25.9259
441 1E96 GTP 0.00000001128 0.53731 25.9259
442 2W2X GSP 0.00000000497 0.59846 25.9459
443 1ZD9 GDP 0.00000005416 0.57959 26.0638
444 1ZJ6 G3D 0.00000001891 0.66163 26.2032
445 1TU3 GNP 0.00000001016 0.53608 26.3158
446 3ZS9 ADP ALF 0.00005348 0.4152 26.3158
447 1R2Q GNP 0.000000004285 0.47752 26.4706
448 1MH1 GNP 0.000000006117 0.53348 26.8817
449 3REF GDP 0.000000004372 0.5825 26.9841
450 3DOE GTP 0.00000006677 0.53646 26.9841
451 1G4U GDP 0.000000009096 0.604 27.1739
452 2BCG GDP 0.000000002564 0.62277 27.5132
453 2WKQ GTP 0.000000006282 0.56689 27.5132
454 2FJU GSP 0.000000006786 0.5915 27.5281
455 3SBD GNP 0.000000008569 0.54055 27.8075
456 1HE1 GDP 0.000000005394 0.59438 27.8409
457 2CJW GDP 0.00000000006679 0.78758 28.0423
458 1OIV GDP 0.000000002312 0.73631 28.0423
459 2A5J GDP 0.0000000006806 0.70324 28.0423
460 1Z06 GNP 0.000000007073 0.55233 28.5714
461 1OIX GDP 0.000000006135 0.54321 28.7958
462 3Q85 GNP 0.0000000004061 0.75077 28.9941
463 3E5H GNP 0.0000002695 0.49607 29.2135
464 1KSH GDP 0.00000002485 0.67462 29.5699
465 1Z0F GDP 0.0000000001803 0.75415 29.6089
466 5JCZ GDP 0.00000002013 0.58798 29.6089
467 3BC1 GNP 0.000000001936 0.55709 29.6296
468 4DSU GDP 0.000000001087 0.55287 29.6296
469 4YC7 GNP 0.00000001442 0.68904 29.8343
470 4LX0 BEF GDP 0.00000000523 0.72205 29.9435
471 2A9K GDP 0.000000001208 0.65231 29.9465
472 5TB5 GDP 0.0000000002153 0.72542 30.2703
473 5TAR GDP 0.0000000003269 0.6952 30.2703
474 1ZC3 GNP 0.0000000003361 0.56714 30.2857
475 2EW1 GNP 0.000000004582 0.71592 30.3483
476 1Z0A GDP 0.0000000004641 0.71098 30.4598
477 4C4P GNP 0.000000006675 0.53146 30.6358
478 2HV8 GTP 0.000000003946 0.5483 30.814
479 1UAD GNP 0.000000002313 0.55562 30.8571
480 2D7C GTP 0.00000001015 0.53681 31.1377
481 3TKL GTP 0.00000000231 0.56636 31.2169
482 4M9Q GNP 0.00000008762 0.53945 31.2169
483 5DI3 GNP 0.000000118 0.53671 31.2169
484 4D0G GTP 0.000000001046 0.60396 31.4286
485 1U8Z GDP 0.000000000377 0.60595 31.5476
486 2HT6 GDP 0.0000000004404 0.76267 31.6092
487 1YZN GNP 0.00000000429 0.53606 31.8919
488 1X1R GDP 0.000000002547 0.54272 32.0225
489 5SZH GNP 0.000000004106 0.53622 32.2751
490 3GJ5 GDP 0.00000001923 0.66129 32.3529
491 3SFV GDP 0.000000001126 0.73814 32.5967
492 5XCO GDP 0.0000000002601 0.69875 32.7485
493 5O2T GSP 0.000000001045 0.55573 33.1361
494 1MR3 G3D 0.000000006317 0.68343 33.1492
495 2F9L GDP 0.00000001109 0.5589 33.3333
496 5UFQ GNP 0.000000001415 0.56247 33.7349
497 1VG9 GDP 0.0000000009212 0.72171 34.0541
498 1VG1 GDP 0.0000000009262 0.7216 34.0541
499 1S8F GDP 0.000000001072 0.54418 34.4633
500 1Z2A GDP 0.00000008606 0.53454 34.5238
501 3NKV GNP 0.000000002312 0.55416 34.8571
502 1KY3 GDP 0.00000001113 0.63141 35.1648
503 3Q72 GNP 0.00000000024 0.77537 35.5422
504 1G16 GDP 0.00000001588 0.56419 37.0588
505 1XTQ GDP 0.00000001368 0.55511 39.548
Pocket No.: 2; Query (leader) PDB : 5KUT; Ligand: GDP; Similar sites found: 4
This union binding pocket(no: 2) in the query (biounit: 5kut.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2WOX NDP 0.02593 0.40695 3.1746
2 3TMK T5A 0.00003757 0.40607 5.29101
3 3QKT ANP 0.0002908 0.40057 5.82011
4 2RHO GSP 0.01555 0.40683 6.34921
Pocket No.: 3; Query (leader) PDB : 5KUT; Ligand: GDP; Similar sites found: 7
This union binding pocket(no: 3) in the query (biounit: 5kut.bio2) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1L2T ATP 0.0001394 0.40168 None
2 3ZL8 ADP 0.0113 0.4111 3.1746
3 1QHH ATP 0.005254 0.40699 3.5503
4 3R96 ACO 0.03955 0.40302 4.25532
5 3R96 AMP 0.03955 0.40302 4.25532
6 1RRC ADP 0.03558 0.4148 6.34921
7 1GHE ACO 0.01867 0.40528 7.34463
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