Receptor
PDB id Resolution Class Description Source Keywords
5L3R 2.5 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE GTPASE HETERODIMER OF CHLOROPLAST SRP54 AND ARABIDOPSIS THALIANA ARABIDOPSIS THALIANA CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG D:401;
A:402;
C:401;
B:402;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
GCP A:401;
B:401;
D:402;
C:402;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
521.208 C11 H18 N5 O13 P3 c1nc2...
GOL B:403;
D:403;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5L3R 2.5 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE GTPASE HETERODIMER OF CHLOROPLAST SRP54 AND ARABIDOPSIS THALIANA ARABIDOPSIS THALIANA CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 263 families.
1 5L3R - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 196 families.
1 5L3R - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 171 families.
1 5L3R - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GCP; Similar ligands found: 136
No: Ligand ECFP6 Tc MDL keys Tc
1 GCP 1 1
2 GP3 0.8375 0.948718
3 GDP 0.82716 0.973684
4 GNH 0.817073 0.961039
5 GP2 0.804878 0.987013
6 GTP 0.797619 0.973684
7 G1R 0.788235 0.961039
8 GSP 0.77907 0.925
9 GNP 0.77907 0.948718
10 5GP 0.765432 0.960526
11 G 0.765432 0.960526
12 G2P 0.758621 0.987013
13 GMV 0.755814 0.948718
14 G2R 0.736264 0.961538
15 Y9Z 0.715789 0.903614
16 GDP MG 0.704545 0.9
17 GAV 0.703297 0.936709
18 G3A 0.701031 0.948718
19 GDC 0.697917 0.936709
20 GDD 0.697917 0.936709
21 GKE 0.697917 0.936709
22 GDP BEF 0.696629 0.878049
23 ALF 5GP 0.696629 0.86747
24 G5P 0.693878 0.948718
25 GPG 0.691489 0.936709
26 GDR 0.690722 0.936709
27 GTG 0.690722 0.91358
28 GFB 0.690722 0.936709
29 GDP AF3 0.688172 0.86747
30 YGP 0.6875 0.879518
31 GCP G 0.684783 0.935897
32 6CK 0.683673 0.91358
33 GTP MG 0.673913 0.9
34 BEF GDP 0.673913 0.86747
35 GKD 0.67 0.936709
36 JB2 0.67 0.936709
37 GDX 0.663366 0.948718
38 GPD 0.663366 0.925926
39 GDP ALF 0.652632 0.86747
40 JB3 0.632075 0.925
41 GMP 0.62963 0.857143
42 NGD 0.626168 0.936709
43 G G 0.616162 0.911392
44 G3D 0.610526 0.960526
45 2MD 0.609091 0.870588
46 G4P 0.597938 0.960526
47 U2G 0.59633 0.91358
48 FEG 0.59633 0.880952
49 GDP 7MG 0.596154 0.888889
50 CAG 0.59292 0.860465
51 MGD 0.59292 0.870588
52 ZGP 0.590909 0.870588
53 0O2 0.59 0.960526
54 CG2 0.585586 0.91358
55 PGD 0.57265 0.902439
56 MD1 0.57265 0.892857
57 3GP 0.566667 0.922078
58 TPG 0.563025 0.842697
59 DBG 0.563025 0.925
60 FE9 0.550847 0.760417
61 ACP 0.548387 0.922078
62 GH3 0.54 0.973684
63 I2C FE2 CMO CMO 0.533898 0.791209
64 2GP 0.532609 0.935065
65 G4M 0.53125 0.860465
66 U A G G 0.529915 0.911392
67 GPX 0.529412 0.922078
68 DGI 0.525773 0.924051
69 G A A A 0.521368 0.9
70 IDP 0.520833 0.947368
71 DGT 0.52 0.924051
72 P1G 0.510417 0.873418
73 G1G 0.504132 0.902439
74 BGO 0.5 0.901235
75 G1R G1R 0.5 0.901235
76 PGD O 0.496 0.831461
77 ACQ 0.494949 0.922078
78 G G U 0.491071 0.911392
79 P2G 0.489583 0.860759
80 GGM 0.487395 0.879518
81 MGP 0.485149 0.936709
82 6G0 0.480392 0.936709
83 DG 0.479167 0.911392
84 DGP 0.479167 0.911392
85 GPC 0.47541 0.858824
86 G C 0.475 0.878049
87 4TC 0.470085 0.876543
88 IMP 0.46875 0.934211
89 GTA 0.464912 0.91358
90 G2Q 0.453704 0.961538
91 A2D 0.452632 0.871795
92 G G G C 0.452381 0.890244
93 G7M 0.44898 0.924051
94 APC G U 0.448 0.8875
95 U G A 0.445255 0.86747
96 SGP 0.444444 0.807229
97 BA3 0.443299 0.871795
98 G G G RPC 0.439024 0.853659
99 B4P 0.438776 0.871795
100 ADP 0.438776 0.896104
101 AP5 0.438776 0.871795
102 A G C C 0.4375 0.888889
103 ANP 0.436893 0.873418
104 G C C C 0.435115 0.901235
105 AN2 0.434343 0.884615
106 M33 0.43 0.860759
107 A12 0.428571 0.910256
108 AP2 0.428571 0.910256
109 A G U 0.427536 0.86747
110 PCG 0.427184 0.909091
111 35G 0.427184 0.909091
112 C2E 0.427184 0.897436
113 ATP 0.425743 0.896104
114 5GP 5GP 0.423077 0.860759
115 G U34 0.422764 0.86747
116 APR 0.421569 0.871795
117 AQP 0.421569 0.896104
118 AR6 0.421569 0.871795
119 5FA 0.421569 0.896104
120 SAP 0.417476 0.851852
121 AGS 0.417476 0.851852
122 AD9 0.417476 0.873418
123 UP5 0.416667 0.851852
124 CA0 0.415842 0.873418
125 ATF 0.415094 0.8625
126 A1R 0.409091 0.841463
127 01G 0.408696 0.880952
128 APC 0.407767 0.910256
129 DG DG 0.40708 0.86747
130 A4P 0.406504 0.848837
131 UCG 0.406015 0.888889
132 7DD 0.405941 0.883117
133 93A 0.405941 0.813953
134 6AD 0.40566 0.821429
135 ADX 0.401961 0.790698
136 AGO 0.401575 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5l3r.bio2) has 24 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found: 470
This union binding pocket(no: 2) in the query (biounit: 5l3r.bio2) has 25 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4QOS ADP 0.00007301 0.51105 2.64151
2 4PFO ADP 0.0008275 0.43426 2.73038
3 5M7P ADP 0.0006323 0.41553 2.73038
4 1YVD GNP 0.0000008537 0.55603 2.95858
5 2W58 ADP 0.000000399 0.42065 2.9703
6 2XTZ GSP 0.0000106 0.51143 2.99003
7 2FNA ADP 0.0001449 0.45197 2.99003
8 3DZD ADP 0.0000867 0.43684 2.99003
9 4LYA ATP 0.00006722 0.4274 2.99003
10 1TQ4 GDP 0.000004318 0.50439 3.07167
11 1WDT GTP 0.0000006633 0.52834 3.32226
12 4ZKD GDP 0.000006246 0.52297 3.32226
13 1XKV ATP 0.0001247 0.42922 3.32226
14 1OS1 ATP 0.001642 0.4269 3.32226
15 1OS1 PYR 0.001844 0.42628 3.32226
16 2FAH GDP 0.0007688 0.40624 3.32226
17 1KK1 GNP 0.0000001869 0.48658 3.41297
18 5KSZ GCP 0.00002934 0.45181 3.41297
19 2JLR ANP 0.0005313 0.41 3.41297
20 2PL3 ADP 0.000007459 0.44263 3.65448
21 1NHX FTB 0.002465 0.43641 3.65448
22 1NHX PEP 0.002337 0.43641 3.65448
23 2GMV UN8 0.001288 0.42971 3.65448
24 2Q2Y ADP 0.00295 0.42887 3.65448
25 2Q2Y MKR 0.00305 0.42715 3.65448
26 2GMV PEP 0.006356 0.40388 3.65448
27 2AWN ADP 0.0000006804 0.4034 3.65448
28 1Z06 GNP 0.000002032 0.5383 3.7037
29 1D5C GDP 0.000002335 0.49904 3.7037
30 5I34 GDP 0.0000001191 0.51256 3.75427
31 3ZFD ANP 0.00001656 0.4552 3.75427
32 1P9B GDP 0.002436 0.43354 3.75427
33 3IUY AMP 0.000342 0.40209 3.94737
34 3FKQ ATP 0.004529 0.42187 3.98671
35 5GJC ATP 0.00008344 0.41614 3.98671
36 2DPY ADP 0.00004317 0.55025 4.09556
37 1AZT GSP 0.000004017 0.53502 4.09556
38 1V8K ANP 0.00009108 0.41803 4.09556
39 1YZQ GNP 0.000001937 0.5438 4.11765
40 5IRR GSP 0.000005418 0.53194 4.43686
41 1NY5 ADP 0.00008845 0.4431 4.43686
42 3DC4 ADP 0.00002099 0.42372 4.43686
43 1VHT BA3 0.0001273 0.42488 4.58716
44 5KSP GDP 0.00001296 0.4547 4.73684
45 3EZ2 ADP 0.00004103 0.54354 4.77816
46 3FVQ ATP 0.00109 0.41219 4.77816
47 1OYY AGS 0.0002021 0.40872 4.77816
48 1WF3 GNP 0.000001115 0.55364 4.98339
49 2C78 GNP 0.0000004484 0.54919 4.98339
50 2C77 GNP 0.0000004631 0.54064 4.98339
51 2RCN GDP 0.0000001137 0.5046 4.98339
52 4PJ3 ANP 0.0002116 0.42577 4.98339
53 4YS0 ADP 0.0005056 0.41708 4.98339
54 2F9L GDP 0.00001032 0.50344 5.02513
55 4DKX GDP 0.0000003839 0.63597 5.09259
56 1IWE IMP 0.00004409 0.55113 5.11945
57 4TTQ ATP 0.0000328 0.43048 5.11945
58 1NJF AGS 0.00005074 0.46985 5.2
59 1NJF ADP 0.00005963 0.4554 5.2
60 1OIX GDP 0.000003385 0.53164 5.2356
61 1OIV GDP 0.00001047 0.51164 5.2356
62 4M9Q GNP 0.0000007451 0.56827 5.28634
63 3DKP ADP 0.000006394 0.45224 5.30612
64 1S8F GDP 0.000005443 0.52753 5.31561
65 5K5Z ANP 0.00005155 0.48137 5.31561
66 3RLF ANP 0.001476 0.41742 5.40541
67 1CLU DBG 0.000003313 0.559 5.42169
68 1TAD ALF 0.000004117 0.53458 5.46075
69 1TAD GDP 0.000004117 0.53458 5.46075
70 5GOE GDP 0.000002026 0.48633 5.46075
71 1YQT ADP 0.0000176 0.41192 5.46075
72 1Z0F GDP 0.0000005058 0.49457 5.58659
73 4U5X GNP 0.000003341 0.50192 5.61798
74 2B8W ALF 5GP 0.00007091 0.47575 5.64784
75 2BIF SIN 0.001486 0.44497 5.64784
76 2BIF ANP 0.000833 0.44497 5.64784
77 1SVM ATP 0.01106 0.41049 5.64784
78 4LX0 BEF GDP 0.000002424 0.53982 5.64972
79 3DOE GTP 0.0000008388 0.54667 5.72917
80 2CHG ANP 0.000253 0.42641 5.75221
81 2A5J GDP 0.000001162 0.59538 5.75916
82 5JCZ GDP 0.000004189 0.4972 5.80205
83 3KJI ADP 0.0009022 0.44989 5.90551
84 1KSH GDP 0.00000062 0.53711 5.91398
85 1ZUI SKM 0.0002347 0.47103 5.95238
86 1G7S GDP 0.000005937 0.56959 5.98007
87 3Q72 GNP 0.0000001127 0.49418 6.0241
88 3B7G ANP 0.00001356 0.45076 6.08696
89 2J0V GDP 0.0000177 0.44715 6.13208
90 3WYA GDP 0.0000009619 0.4801 6.14334
91 1DAR GDP 0.000001152 0.47625 6.14334
92 3WY9 GDP 0.000001742 0.46585 6.14334
93 5IRN ADP 0.0000497 0.44548 6.14334
94 2Y8E GNP 0.000001975 0.52926 6.14525
95 4YMU ATP 0.00006076 0.40992 6.25
96 1R0X ATP 0.00009002 0.40088 6.29371
97 3FWY ADP 0.0000009091 0.51496 6.31229
98 4IEE AGS 0.0002875 0.5009 6.31229
99 4R43 GDP 0.0002519 0.49744 6.31229
100 1GOJ ADP 0.000004499 0.40418 6.31229
101 1Z0A GDP 0.000001044 0.49471 6.32184
102 4DSU GDP 0.000004405 0.52918 6.34921
103 2OZE AGS 0.01165 0.40595 6.37584
104 2WJG GDP 0.0000004958 0.48953 6.38298
105 3BFX A3P 0.006217 0.40941 6.41892
106 4ZG4 VO4 ADP 0.0001832 0.45361 6.48464
107 3RWO GDP 0.00001374 0.50683 6.48649
108 2QZ4 ADP 0.00002524 0.44827 6.48855
109 4RD0 GDP 0.000001403 0.53092 6.50602
110 4IOK ADP 0.01589 0.41099 6.61896
111 4IOK XPO 0.01428 0.40876 6.61896
112 2IXE ATP 0.001648 0.41054 6.64207
113 1D2E GDP 0.000004643 0.48299 6.64452
114 5I0H ADP BEF 0.00009482 0.45319 6.64452
115 3QKT ANP 0.003096 0.40922 6.64452
116 5G41 AP5 0.0009672 0.4552 6.72646
117 2CJW GDP 0.00000007001 0.51311 6.77083
118 3PCR GTP 0.000001855 0.53333 6.79012
119 4E03 ADP 0.000003924 0.47186 6.79612
120 1FQK GDP 0.00002044 0.50254 6.80272
121 1FQK ALF 0.003494 0.45494 6.80272
122 2WKQ GTP 0.00001584 0.49651 6.82594
123 1ZCB GDP 0.00009908 0.47185 6.82594
124 1YTM ATP 0.0003133 0.46196 6.82594
125 3IO3 ADP 0.009472 0.40989 6.82594
126 4FCW ADP 0.0005444 0.40169 6.82594
127 3CNL GNP 0.00000008623 0.49392 6.87023
128 5KUT GDP 0.000005714 0.46213 6.87831
129 4MKF AP5 0.001085 0.44874 6.91244
130 3SBD GNP 0.00002548 0.4959 6.95187
131 4XGU ADP 0.0001844 0.43384 6.97674
132 5N69 ADP 0.0003539 0.41272 7.03518
133 1H65 GDP 0.00001755 0.48816 7.03704
134 3ZS9 ADP ALF 0.0000237 0.49923 7.16724
135 2WOJ ADP ALF 0.00002873 0.4958 7.16724
136 1X6V ADP 0.0006244 0.44429 7.16724
137 2VF7 ADP 0.0001862 0.41152 7.16724
138 1SVI GDP 0.000001911 0.46697 7.17949
139 2WJH GDP 0.0000003692 0.50511 7.22892
140 2WJH FLC 0.000002424 0.486 7.22892
141 1YZG GDP 0.0000001771 0.51167 7.26257
142 3WXM GTP 0.000003885 0.5292 7.30897
143 1SKQ GDP 0.0000005047 0.47595 7.30897
144 4HSE ADP 0.0000325 0.43453 7.30897
145 2VB6 ADP BEF 0.001153 0.42199 7.38255
146 3N5C GDP 0.0000002082 0.50062 7.40741
147 3TNF GNP 0.00000109 0.5563 7.47126
148 1ZJ6 G3D 0.006023 0.40992 7.48663
149 3WYF GTP 0.000005434 0.52756 7.50853
150 2EFE GNH 0.000004249 0.4845 7.50853
151 3P4X ADP 0.000002156 0.46242 7.50853
152 4KBF AMP 0.0000524 0.41784 7.50853
153 2FSH ANP 0.0000729 0.41518 7.50853
154 5IRC GDP 0.000255 0.41589 7.52688
155 4QM7 GTP 0.00004682 0.42374 7.60234
156 4J0Q GDP 0.0000003152 0.48113 7.6412
157 4OHY ANP 0.00005326 0.48079 7.6412
158 5FG3 GDP 0.000001796 0.46405 7.6412
159 1G7C 5GP 0.00003288 0.43645 7.6412
160 1R6B ADP 0.0001746 0.41533 7.6412
161 3GJ0 GDP 0.000001579 0.60577 7.69231
162 4KAX GTP 0.0000004823 0.54872 7.69231
163 3RAB GNP 0.000003219 0.53253 7.69231
164 3GJ8 GDP 0.000001574 0.48107 7.69231
165 3GJ5 GDP 0.000001964 0.47841 7.69231
166 3GJ4 GDP 0.000001312 0.47657 7.69231
167 3GJ3 GDP 0.000001547 0.47411 7.69231
168 3AB3 GDP 0.00002838 0.47348 7.72358
169 1Z2A GDP 0.00001339 0.51013 7.7381
170 2ODE ALF GDP 0.000007887 0.52289 7.80142
171 1IBR GNP 0.000004582 0.52848 7.87037
172 3CX8 GSP 0.00001022 0.51823 7.88177
173 2ZFI ADP 0.00009096 0.41922 7.9235
174 2YJP CYS 0.003838 0.45183 7.97342
175 5IFS ADP 0.00003006 0.44652 7.97342
176 1LVG ADP 0.000003465 0.44167 8.08081
177 2XTN GTP 0.000005291 0.51515 8.11966
178 3U6B GDP 0.0000004796 0.64097 8.19113
179 2FFQ GSP 0.000001038 0.55491 8.19113
180 2EW1 GNP 0.0000008052 0.54739 8.19113
181 2BVN GNP 0.0000001391 0.53348 8.19113
182 5JBQ GDP 0.0000004864 0.48614 8.19113
183 4G5G GDP 0.000000798 0.48065 8.19113
184 1D8T GDP 0.0000008769 0.48021 8.19113
185 3U6K GDP 0.000001821 0.47253 8.19113
186 3EC1 GDP 0.000003469 0.47246 8.19113
187 4IDN GNP 0.0002556 0.44174 8.19113
188 1GOT GDP 0.00004274 0.47381 8.21918
189 5JCP GDP ALF 0.000005267 0.55079 8.30565
190 2BCG GDP 0.000006067 0.54169 8.30565
191 5M04 GDP 0.0000003498 0.48057 8.30565
192 2J5V PCA 0.04599 0.40652 8.30565
193 4KVG GTP 0.000001977 0.54116 8.33333
194 1A4R GDP 0.000031 0.46836 8.37696
195 1A4R GNH 0.00002984 0.46033 8.37696
196 4ITR GDP 0.000121 0.44446 8.37696
197 2NGR GDP 0.00003081 0.43939 8.37696
198 4ZNL BEF ADP 0.00006022 0.42724 8.39416
199 3E5H GNP 0.01044 0.41639 8.42697
200 1J2J GTP 0.000001791 0.54624 8.43373
201 2J59 GTP 0.00000131 0.53915 8.43373
202 1O3Y GTP 0.000001329 0.53906 8.43373
203 2CBZ ATP 0.000001177 0.65257 8.43882
204 4WOP CTP 0.00002151 0.47981 8.44444
205 4TMK T5A 0.007284 0.40523 8.4507
206 1W0J ADP 0.00001583 0.46384 8.45588
207 1W0J ADP BEF 0.0005179 0.41974 8.45588
208 3Q9L ATP 0.00001369 0.47083 8.46154
209 4R98 GNH 0.00001598 0.44776 8.48709
210 4TMZ GSP 0.00000229 0.52931 8.53242
211 4NCN GTP 0.000002935 0.52511 8.53242
212 1S9D GDP 0.0000004891 0.62164 8.53659
213 1RE0 GDP 0.0000002244 0.48987 8.53659
214 1F6B GDP 0.0000009097 0.49125 8.58586
215 3ZQ6 ADP ALF 0.00001032 0.51404 8.63787
216 1IHU ADP 0.00001098 0.50182 8.63787
217 1IHU AF3 0.000008954 0.49813 8.63787
218 3AQ4 GDP 0.0000001898 0.5109 8.69565
219 1UPT GTP 0.0000003662 0.5536 8.77193
220 1KY3 GDP 0.0000008688 0.50608 8.79121
221 4P32 ADP 0.002451 0.40398 8.83534
222 4YC7 GNP 0.00002504 0.48286 8.83978
223 1GRN GDP 0.0001446 0.43595 8.86699
224 1SQ5 ADP 0.00004832 0.52588 8.87372
225 2BEK ATP 0.000505 0.45948 8.94942
226 4V03 ADP 0.00001365 0.45604 8.94942
227 1P72 ADP 0.0004267 0.45577 8.9701
228 1OXV ANP 0.00007526 0.40688 8.9701
229 4HDQ GNP 0.000002595 0.5386 8.98204
230 4HDO GNP 0.000003039 0.53579 8.98204
231 5DI3 GNP 0.0000009261 0.56429 9.12547
232 1JI0 ATP 0.00005073 0.54662 9.16667
233 1VG8 GNP 0.000001095 0.55396 9.17874
234 4LHW GNP 0.000003699 0.51867 9.1954
235 1JJV ATP 0.000001689 0.43895 9.2233
236 5H56 TYD 0.0004544 0.45159 9.23077
237 5H56 ADP 0.0004544 0.45159 9.23077
238 4YLG GDP 0.0000007145 0.51902 9.24856
239 3TMK T5A 0.002038 0.42301 9.25926
240 4Q1A UDP 0.006143 0.46251 9.28571
241 4Q1A 2XZ 0.006143 0.46251 9.28571
242 3VMF GTP 0.000003032 0.53359 9.30233
243 1VG0 GDP 0.000001721 0.49648 9.30233
244 5VGR GDP 0.0001081 0.49191 9.30233
245 3TBK ANP 0.0000532 0.41242 9.30233
246 2GK6 ADP 0.0000544 0.40489 9.30233
247 2WIC GNP 0.0000003392 0.50319 9.3633
248 4V0K GDP 0.00001236 0.50651 9.46746
249 1M2O GNP 0.00000174 0.54342 9.47368
250 2I4I AMP 0.0003221 0.42446 9.55631
251 2QTV GNP 0.000001839 0.54006 9.58084
252 3A4M ADP 0.0000006998 0.46062 9.61539
253 3CV2 OXL 0.03825 0.40594 9.63455
254 1WA5 GTP 0.000004654 0.47748 9.65909
255 1SVK ALF GDP 0.00001112 0.51862 9.89761
256 5KDO GDP 0.00002846 0.50677 9.89761
257 4PX9 ADP 0.000001751 0.45565 9.89761
258 4A4Z ANP 0.0001291 0.41912 9.89761
259 4PC3 GDP 0.000002106 0.49365 9.92908
260 1JWY GDP 0.0000003954 0.51676 9.96678
261 5HR5 ADP 0.0001267 0.43427 9.96678
262 1JWY ADP 0.0003048 0.40325 9.96678
263 5LTJ ADP 0.0003552 0.40317 9.96678
264 1Z08 GNP 0.000005392 0.51492 10
265 3GJ7 GDP 0.00000118 0.47657 10.2041
266 4B47 GDP 0.0000008213 0.47238 10.2389
267 1VG1 GDP 0.0000003683 0.49981 10.2703
268 1VG9 GDP 0.0000006312 0.49455 10.2703
269 1D2N ANP 0.0004312 0.42853 10.2941
270 3COB ADP 0.00001498 0.40494 10.299
271 1KK8 BEF ADP 0.0009398 0.40478 10.3896
272 2OFW ADX 0.0004059 0.4648 10.5769
273 1R2Q GNP 0.000002055 0.55669 10.5882
274 3MJH GTP 0.000001968 0.52931 10.7143
275 3X1Z GNP 0.000003277 0.5366 10.7784
276 3W5J GDP 0.000000429 0.44332 10.7843
277 1QF9 ADP 0.00258 0.42797 10.8247
278 1QF9 ALF 0.00258 0.42797 10.8247
279 1QF9 C5P 0.00258 0.42797 10.8247
280 5FTB ANP 0.0000502 0.51868 10.9635
281 5FHD ADP ALF 0.0002425 0.46674 10.9635
282 3KTA AP5 0.0002393 0.42432 10.9827
283 4P3Y GDP 0.0000003443 0.48104 10.989
284 4ZI2 GNP 0.0000009862 0.53669 11.0526
285 3DEF GDP 0.000002462 0.48839 11.0687
286 4GOJ GNP 0.0000008345 0.53945 11.1111
287 1GUA GNP 0.000002397 0.517 11.1111
288 3IIJ ADP 0.00000359 0.46069 11.1111
289 1ZD9 GDP 0.000004101 0.49674 11.1702
290 2PEZ DAT 0.0007482 0.44553 11.1732
291 2PEZ GGZ 0.0007482 0.44553 11.1732
292 3PQC GDP 0.00004008 0.44306 11.2821
293 1KO8 6PG 0.00004435 0.45898 11.2957
294 4OI4 ATP 0.0002207 0.45026 11.2957
295 1UKZ ADP 0.002807 0.42272 11.33
296 1F2U ATP 0.006021 0.4006 11.4094
297 2ZEJ GDP 0.000007563 0.51956 11.413
298 2ZR9 DTP 0.0001946 0.4047 11.4613
299 3FB4 AP5 0.0007205 0.45528 11.5741
300 3ZIA ADP 0.00006715 0.44162 11.5942
301 3ZIA ATP 0.00004093 0.43667 11.5942
302 1DAK DPU 0.006797 0.44306 11.6071
303 1DAK ADP 0.006797 0.44306 11.6071
304 5LB3 ADP 0.00002452 0.42878 11.6279
305 5MZN ADP 0.0001022 0.40372 11.6279
306 5BXQ GDP 0.000001305 0.48354 11.811
307 2BME GNP 0.000002259 0.5388 11.828
308 2QN6 GDP 0.0000005293 0.47724 11.828
309 1FQJ GDP 0.00001659 0.49534 11.9048
310 1Z6T ADP 0.00003178 0.45727 11.9454
311 2ZPA ADP 0.0001554 0.439 11.9454
312 4NU0 AP5 0.0009697 0.44735 11.9816
313 4MKG AP5 0.001138 0.44672 11.9816
314 1S3G AP5 0.001483 0.44175 11.9816
315 4D81 ADP 0.0001198 0.43253 12.0141
316 2QG6 NMN 0.001576 0.4261 12.0603
317 2HT6 GDP 0.0000000563 0.50555 12.069
318 4JLV ADP 0.00002694 0.41678 12.2677
319 4RZ3 ADP 0.00001432 0.47354 12.2867
320 1IN4 ADP 0.0001735 0.43705 12.2924
321 4GOX A3P 0.00231 0.40993 12.2924
322 2GCO GNP 0.000004509 0.49067 12.4378
323 2GCN GDP 0.00006974 0.46516 12.4378
324 3H86 AP5 0.0006613 0.45057 12.5
325 3UIE ANP 0.0000404 0.44534 12.5
326 1NVU GTP 0.000006325 0.52274 12.628
327 4NON GDP 0.00003962 0.49201 12.6923
328 5UQW GDP 0.000008686 0.51272 12.6984
329 1M7G ADX 0.001484 0.43165 12.7962
330 1M7G AV2 0.00002221 0.42935 12.7962
331 1M7G ADP 0.003101 0.41545 12.7962
332 1FP6 ADP 0.000004454 0.47872 12.8028
333 4XTR ATP 0.0000188 0.49297 12.9032
334 4XVU ATP 0.00002067 0.49138 12.9032
335 4XTR ADP 0.00002235 0.46941 12.9032
336 1OW3 GDP 0.00009656 0.44202 12.9534
337 5TAR GDP 0.000002559 0.57189 12.973
338 5TB5 GDP 0.000001541 0.48823 12.973
339 5HCN GCP 0.0000004082 0.50794 13.0268
340 1KMQ GNP 0.00002269 0.49009 13.0435
341 4C4P GNP 0.000005225 0.52614 13.0841
342 3TKL GTP 0.000001005 0.55069 13.2653
343 3BFV ADP 0.000001097 0.47501 13.2841
344 1W5T ANP 0.0003031 0.43504 13.289
345 1W5T ADP 0.0007099 0.41078 13.289
346 1NRJ GTP 0.0000003468 0.54596 13.2911
347 4XOI GTP 0.00002535 0.49386 13.3333
348 1ZIN AP5 0.0006632 0.45683 13.3641
349 4WZA ADP 0.00003562 0.53181 13.4058
350 4WZA ACP 0.00003562 0.53181 13.4058
351 1YZN GNP 0.00000173 0.52231 13.5135
352 4D0N GDP 0.000005688 0.45383 13.5135
353 5HPY GDP 0.0000737 0.44619 13.5135
354 3LXR GDP 0.00004303 0.44424 13.5135
355 1Y63 ADP 0.000007292 0.45099 13.587
356 4BQS ADP 0.000381 0.46208 13.6364
357 4BQS K2Q 0.000381 0.46208 13.6364
358 5BQ5 ADP BEF 0.00008699 0.50748 13.7566
359 4DID GDP 0.00002382 0.44286 13.8158
360 2C5L GTP 0.000002602 0.53855 13.8728
361 2QEN ADP 0.00006912 0.4491 13.9535
362 4XSH GSP 0.000007072 0.49112 13.9665
363 3QF7 ANP 0.0007105 0.41508 14
364 5XCO GDP 0.000002292 0.49181 14.0351
365 5X40 ACP 0.003209 0.40409 14.0411
366 4HI0 GDP 0.000002578 0.5142 14.0704
367 1TX4 ALF GDP 0.00002417 0.49953 14.1243
368 5O2T GSP 0.000003163 0.53508 14.2012
369 5E95 GDP 0.000006103 0.54791 14.2857
370 2D7C GTP 0.000003963 0.52885 14.2857
371 4OPC FDA 0.04179 0.40823 14.2857
372 3SFV GDP 0.00001547 0.48335 14.3646
373 3T5G GDP 0.000004614 0.47285 14.3646
374 1LFD GNP 0.000002174 0.53948 14.3713
375 2UZI GTP 0.000002181 0.53942 14.4231
376 5UFQ GNP 0.0000006111 0.56195 14.4578
377 1NVV GNP 0.000002666 0.53812 14.4578
378 3DDC GNP 0.000004238 0.52987 14.4578
379 1WQ1 GDP 0.00001881 0.49294 14.4578
380 3KUD GDP 0.00001331 0.48575 14.4578
381 4D0G GTP 0.00000159 0.52872 14.4928
382 4LC1 GDP 0.000000213 0.50004 14.6758
383 5UWH GNP 0.000002674 0.53807 14.6853
384 5DIF GNP 0.000003072 0.5356 14.6853
385 5DHF GNP 0.000003126 0.53529 14.6853
386 5UWO GNP 0.000003136 0.53523 14.6853
387 5UWP GNP 0.000003657 0.53464 14.6853
388 5UWI GNP 0.000003849 0.53159 14.6853
389 5DI9 GNP 0.000004398 0.53134 14.6853
390 5UWU GNP 0.000004127 0.53034 14.6853
391 5UWJ GNP 0.000004083 0.50852 14.6853
392 5MVR ADP 0.0001015 0.41455 14.8148
393 4LPS GDP 0.000005455 0.46415 14.876
394 4HAT GNP 0.000003985 0.53311 15
395 5WDR GNP 0.000003957 0.53109 15.2047
396 3T12 GDP ALF 0.000004406 0.51278 15.3584
397 3TK1 GDP 0.0000001013 0.48746 15.3584
398 3T1O GDP 0.000004832 0.47453 15.3584
399 4X8O AP5 0.00248 0.43727 15.4206
400 1CS4 GSP 0.000004687 0.49835 15.5556
401 1NF3 GNP 0.00004591 0.48547 15.625
402 3CPJ GDP 0.000002534 0.49 15.6951
403 2PZE ATP 0.0000121 0.40302 15.7205
404 2X77 GDP 0.000002876 0.47628 15.873
405 3WYG GTP 0.00000659 0.5241 15.9341
406 3T34 GDP 0.00001725 0.50559 15.9468
407 2GJ8 ALF GDP 0.0000014 0.52559 16.2791
408 3FYH ADP 0.002598 0.41232 16.3823
409 1CXZ GSP 0.00001142 0.49583 16.4835
410 2G77 GDP 0.000003414 0.49205 16.6113
411 4H1V GNP 0.0000166 0.47341 16.6113
412 5J1J ANP 0.0000006768 0.5502 16.8421
413 1GP2 GDP 0.00004254 0.48938 16.9014
414 1MKY GDP 0.0000002337 0.49799 16.9435
415 3REF GDP 0.00002784 0.50198 17.0103
416 5TSH ANP 0.00001696 0.43799 17.0648
417 1YRB GDP 0.0000003903 0.51977 17.1756
418 4KFU ACP 0.00006323 0.40181 17.4061
419 2RGX AP5 0.003125 0.4299 17.9612
420 2V7Q ATP 0.00001529 0.45486 18
421 2CK3 ADP 0.0005605 0.43442 18
422 2CK3 ANP 0.00044 0.42242 18
423 2V7Q ADP 0.0000973 0.41071 18
424 2GDJ ANP 0.000298 0.40303 18.1818
425 1RYH GNP 0.000002142 0.48763 18.2266
426 2FJU GSP 0.00001229 0.48868 18.2724
427 4AG5 ADP 0.000006799 0.59769 18.6047
428 3A1S GDP 0.000005552 0.46357 18.6047
429 2A5F GTP 0.000001069 0.54962 18.6528
430 1Z83 AP5 0.003875 0.41681 18.8776
431 3Q85 GNP 0.0000001509 0.50106 18.9349
432 2OM2 GDP 0.00001853 0.51479 19.4444
433 2IS6 ADP 0.00002687 0.4303 19.4539
434 2F5X ASP 0.026 0.40607 19.4539
435 2W83 GTP 0.000001136 0.54169 19.4805
436 1R4A GNP 0.0000002937 0.57236 19.6078
437 3QBT GNP 0.000001496 0.53393 20
438 1L2T ATP 0.004503 0.40261 20
439 2W2X GSP 0.000003918 0.50686 20.1613
440 1Z0K GTP 0.000002703 0.52674 20.2899
441 2XT3 ADP 0.00001337 0.40391 20.4778
442 3EWA ANP 0.000122 0.41085 20.4969
443 4BAS GNP 0.000000479 0.54928 20.603
444 5EE5 GTP 0.0000003689 0.55336 21.1268
445 5TIV A3P 0.006673 0.41653 21.5017
446 2HCJ GDP 0.0000006047 0.47587 21.6216
447 5SZH GNP 0.000001798 0.54513 22.2222
448 3H4S ADP 0.00001613 0.40139 22.963
449 2HF9 GSP 0.00002725 0.49471 23.0089
450 2HV8 GTP 0.000004444 0.52682 23.4375
451 5J1S ATP 0.0006849 0.43581 23.5772
452 4DCT GDP 0.00000084 0.49118 23.588
453 3GJX GTP 0.000006599 0.52199 23.6111
454 1EK0 GNP 0.000002007 0.54089 24.1176
455 3VX3 ADP 0.0001315 0.44342 24.1935
456 1HTW ADP 0.0002405 0.41059 24.6835
457 3NKV GNP 0.00000175 0.54332 25.1429
458 1UAD GNP 0.000004362 0.52715 25.1429
459 1Z0J GTP 0.0000007207 0.56141 25.4237
460 5UWT GNP 0.000003557 0.53299 26.087
461 1TU3 GNP 0.00000136 0.54778 27.8481
462 2A9K GDP 0.000006654 0.48224 28.3422
463 5UWW GNP 0.000004024 0.5308 28.5714
464 5UWR GNP 0.000003511 0.53322 29.6296
465 3BC1 GNP 0.000001479 0.5463 32.2034
466 4CVN ADP 0.000005573 0.59627 33.5766
467 5UWS GNP 0.000004272 0.53186 36.3636
468 5UWQ GNP 0.000003666 0.5102 36.3636
469 1QHH ATP 0.003691 0.43545 40.1198
470 2D7D ADP 0.0001189 0.41231 47.5
Pocket No.: 3; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found: 18
This union binding pocket(no: 3) in the query (biounit: 5l3r.bio1) has 24 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5EP2 AZU 0.00202 0.41027 2.73438
2 3BOS CDP 0.0003593 0.40126 3.30579
3 2WHX ADP 0.00004966 0.40223 3.41297
4 2VVG ADP 0.000008471 0.40663 4.98339
5 3NHB ADP 0.00006322 0.40245 4.98339
6 3LRE ADP 0.000008019 0.40469 7.16724
7 1JJ7 ADP 0.00001028 0.40103 7.69231
8 1Q8S MAN MMA 0.02548 0.40678 9.12698
9 2XAU ADP 0.0009166 0.40053 9.63455
10 4FRZ ADP 0.00005127 0.40573 9.89761
11 1B7T ADP 0.0007456 0.40388 10.2564
12 4WZ6 ATP 0.00004192 0.40746 12.069
13 2WPF FAD 0.04259 0.40887 12.2867
14 3BER AMP 0.0003767 0.40501 13.253
15 1F9V ADP 0.00005233 0.40435 15.2824
16 2OBM ADP 0.00002059 0.40267 17.7474
17 1QHG ATP 0.001342 0.40247 21.5947
18 4YDS ATP 0.00007913 0.4065 28.5088
Pocket No.: 4; Query (leader) PDB : 5L3R; Ligand: GCP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5l3r.bio1) has 24 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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