Receptor
PDB id Resolution Class Description Source Keywords
5L3V 2.3 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE CRENARCHAEAL SRP54 GTPASE BOUND TO GDP SULFOLOBUS SOLFATARICUS CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE SIGNALING PROTEIN PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 A:303;
A:302;
B:302;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
GDP B:301;
A:301;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5L3V 2.3 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE CRENARCHAEAL SRP54 GTPASE BOUND TO GDP SULFOLOBUS SOLFATARICUS CO-TRANSLATIONAL PROTEIN TARGETING SIGNAL RECOGNITION PARTIGTPASE SIGNALING PROTEIN PROTEIN TRANSPORT
Ref.: STRUCTURAL BASIS FOR CONSERVED REGULATION AND ADAPT THE SIGNAL RECOGNITION PARTICLE TARGETING COMPLEX. J.MOL.BIOL. V. 428 2880 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 263 families.
1 5L3V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 196 families.
1 5L3V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 171 families.
1 1O87 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 2NG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1NG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 2C03 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1JPJ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 2C04 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
7 1JPN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 5L3V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5L3V; Ligand: GDP; Similar sites found: 533
This union binding pocket(no: 1) in the query (biounit: 5l3v.bio1) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1S7N COA 0.01109 0.40364 1.64835
2 1P72 ADP 0.0001414 0.50988 1.67224
3 5GJC ATP 0.0001902 0.4582 1.67224
4 2F5X ASP 0.01248 0.41323 1.67224
5 3BD9 A3P 0.003066 0.41489 1.78571
6 5EP2 AZU 0.01198 0.40209 1.95312
7 4TMZ GSP 0.000009959 0.54932 2.00669
8 4NCN GTP 0.000009552 0.47544 2.00669
9 5WRJ A3P 0.001252 0.45316 2.00669
10 2X7I CIT 0.003045 0.40768 2.00669
11 3CV2 OXL 0.02077 0.40748 2.00669
12 1VKJ A3P 0.005949 0.41618 2.10526
13 4AG5 ADP 0.0000003306 0.64705 2.34114
14 1MKY GDP 0.0000001227 0.59446 2.34114
15 5TSH ANP 0.000003731 0.53003 2.34114
16 5K5Z ANP 0.00007642 0.51012 2.34114
17 4PFO ADP 0.0001134 0.50405 2.34114
18 5TSH ADP 0.000002613 0.49529 2.34114
19 3ZFD ANP 0.0001246 0.48368 2.34114
20 1NST A3P 0.0007376 0.45373 2.34114
21 5WRI A3P 0.001095 0.45216 2.34114
22 2ZJ5 ADP 0.002126 0.45018 2.34114
23 4K91 SIN 0.02112 0.40698 2.34114
24 1J99 AND 0.02096 0.40591 2.38908
25 2RCN GDP 0.0000000704 0.60334 2.67559
26 5GOE GDP 0.0000004243 0.59475 2.67559
27 2OBM ADP 0.00001396 0.56706 2.67559
28 3TBK ANP 0.00006507 0.52401 2.67559
29 4R43 GDP 0.0001606 0.49077 2.67559
30 2Q2Y ADP 0.0006176 0.48808 2.67559
31 2Q2Y MKR 0.0005951 0.48768 2.67559
32 4IDN GNP 0.0003697 0.41845 2.67559
33 2O0J ADP 0.000991 0.41752 2.67559
34 1X8J A3P 0.02549 0.40883 2.67559
35 4R5M NAP 0.01812 0.40542 2.67559
36 2VB6 ADP BEF 0.0001006 0.50244 2.68456
37 4DKX GDP 0.0000002049 0.62763 2.77778
38 3ZS9 ADP ALF 0.0000573 0.51999 3.01003
39 5MZN ADP 0.0001278 0.5094 3.01003
40 5KSZ GCP 0.00004383 0.5041 3.01003
41 3COB ADP 0.000001583 0.4915 3.01003
42 1F9V ADP 0.000005678 0.48667 3.01003
43 4FRZ ADP 0.000006077 0.48517 3.01003
44 2AWN ADP 0.0000002517 0.47649 3.01003
45 5M7P ADP 0.0004227 0.46706 3.01003
46 2WOJ ADP ALF 0.00006481 0.4242 3.01003
47 4DID GDP 0.000006483 0.53159 3.10881
48 1FP6 ADP 0.000008419 0.53943 3.11419
49 1A4R GNH 0.0000178 0.49695 3.14136
50 1A4R GDP 0.0000288 0.48087 3.14136
51 4Q1A UDP 0.005744 0.48773 3.21429
52 4Q1A 2XZ 0.005744 0.48773 3.21429
53 4WEI GLC GAL 0.002125 0.46151 3.2491
54 4YC7 GNP 0.00006198 0.51005 3.31492
55 3EC1 GDP 0.000001185 0.56386 3.34448
56 1XKV ATP 0.00001695 0.52266 3.34448
57 1OS1 PYR 0.0001061 0.51266 3.34448
58 1OS1 ATP 0.00009767 0.51266 3.34448
59 2WKQ GTP 0.00007041 0.50968 3.34448
60 2D7D ADP 0.00001174 0.50871 3.34448
61 1NHX PEP 0.0007899 0.48617 3.34448
62 1NHX FTB 0.0008298 0.48617 3.34448
63 4HSE ADP 0.00008093 0.48406 3.34448
64 2I4I AMP 0.00009878 0.46885 3.34448
65 2GMV UN8 0.0002561 0.40008 3.34448
66 2PL3 ADP 0.00001264 0.55097 3.38983
67 2NGR GDP 0.00002033 0.52596 3.4188
68 5X40 ACP 0.0003175 0.47915 3.42466
69 4WZ6 ATP 0.00002458 0.55072 3.44828
70 1YZQ GNP 0.00000446 0.4598 3.52941
71 1T8U A3P 0.006574 0.41417 3.67647
72 5IRN ADP 0.00003037 0.51417 3.67893
73 4PJ3 ANP 0.0001452 0.47086 3.67893
74 2Y65 ADP 0.000007497 0.46834 3.67893
75 4GOX A3P 0.0006096 0.46593 3.67893
76 1NY5 ADP 0.0004211 0.46483 3.67893
77 4IHQ ADP 0.007531 0.42382 3.67893
78 3QKT ANP 0.0002329 0.41174 3.67893
79 2GQT FAD 0.03865 0.40911 3.73134
80 4PX9 ADP 0.000001473 0.5357 3.76712
81 2J0V GDP 0.000006511 0.53182 3.77358
82 3DEF GDP 0.0000003612 0.6014 3.81679
83 5JCP GDP ALF 0.00003551 0.48685 3.81862
84 2GCN GDP 0.0000317 0.52357 3.9801
85 2GCO GNP 0.00004007 0.51144 3.9801
86 1NJF AGS 0.00001961 0.53325 4
87 1NJF ADP 0.00002001 0.52786 4
88 1YQT ADP 0.000005785 0.58322 4.01338
89 1WDT GTP 0.000001762 0.57629 4.01338
90 1SKQ GDP 0.0000003258 0.56426 4.01338
91 2ODE ALF GDP 0.00000915 0.56176 4.01338
92 1SVK ALF GDP 0.00001128 0.55932 4.01338
93 3VMF GTP 0.00000932 0.5552 4.01338
94 3WXM GTP 0.00001928 0.54032 4.01338
95 1OXV ANP 0.00002833 0.48067 4.01338
96 1GOJ ADP 0.000001667 0.47448 4.01338
97 4KBF AMP 0.0000597 0.47264 4.01338
98 5IRR GSP 0.00001574 0.46898 4.01338
99 1R6B ADP 0.0002393 0.46418 4.01338
100 1YTM ATP 0.00007759 0.45675 4.01338
101 4A4Z ANP 0.001317 0.44755 4.01338
102 1AZT GSP 0.000007033 0.44084 4.01338
103 2ZPT A3P 0.02633 0.41778 4.0678
104 2ZFI ADP 0.00006157 0.48043 4.09836
105 1SVI GDP 0.0000006189 0.61455 4.10256
106 1U0J ADP 0.0002849 0.44226 4.11985
107 1YVD GNP 0.000001987 0.58682 4.14201
108 1OW3 GDP 0.0000406 0.51118 4.14508
109 5UQW GDP 0.000002804 0.57743 4.2328
110 5KUT GDP 0.0000006672 0.57435 4.2328
111 4DSU GDP 0.000001836 0.47089 4.2328
112 1KSH GDP 0.000000708 0.5974 4.30108
113 5TB5 GDP 0.000001145 0.57535 4.32432
114 5TAR GDP 0.000001817 0.55227 4.32432
115 5HPY GDP 0.00002311 0.52234 4.32432
116 3U6B GDP 0.0000003429 0.627 4.34783
117 5JBQ GDP 0.0000002758 0.57965 4.34783
118 1D8T GDP 0.0000002919 0.57879 4.34783
119 4G5G GDP 0.0000003902 0.57357 4.34783
120 4P3Y GDP 0.0000002079 0.57247 4.34783
121 4PC3 GDP 0.0000006316 0.57216 4.34783
122 2HCJ GDP 0.0000002511 0.56953 4.34783
123 2BVN GNP 0.000002667 0.56205 4.34783
124 2DPY ADP 0.0000114 0.56173 4.34783
125 3U6K GDP 0.0000008078 0.5614 4.34783
126 2ZPA ADP 0.00002392 0.52431 4.34783
127 1KMQ GNP 0.00006749 0.51054 4.34783
128 2VVG ADP 0.000002145 0.47174 4.34783
129 2VF7 ADP 0.0001848 0.46831 4.34783
130 4XGU ADP 0.0001296 0.46305 4.34783
131 3NTA FAD 0.01477 0.41974 4.34783
132 3NTD FAD 0.01777 0.41573 4.34783
133 3NT6 FAD 0.01802 0.41543 4.34783
134 4J36 1HR 0.03964 0.40257 4.34783
135 4J36 FAD 0.02847 0.40257 4.34783
136 2D2F ADP 0.0001762 0.40143 4.4
137 4M9Q GNP 0.0000006577 0.52127 4.40529
138 4RZ3 ADP 0.00002822 0.51838 4.40678
139 3T5G GDP 0.000002799 0.55788 4.41989
140 1UKZ ADP 0.0005518 0.48274 4.4335
141 1H65 GDP 0.0000007522 0.51774 4.44444
142 4XOI GTP 0.00005597 0.51646 4.44444
143 3H4S ADP 0.00000195 0.48692 4.44444
144 1CS4 GSP 0.00001527 0.43825 4.44444
145 4U5X GNP 0.00002422 0.52406 4.49438
146 4U00 ADP 0.0000007168 0.48218 4.5082
147 3PQC GDP 0.00001349 0.52713 4.61538
148 3Q9L ATP 0.00007423 0.47246 4.61538
149 5XCO GDP 0.000001159 0.57846 4.67836
150 5WDR GNP 0.00000669 0.56415 4.67836
151 4WZA ADP 0.0001622 0.5356 4.68227
152 4WZA ACP 0.0001914 0.53188 4.68227
153 2FAH GDP 0.0006365 0.44335 4.68227
154 2OZE AGS 0.008112 0.43563 4.69799
155 3KJI ADP 0.0005522 0.48928 4.72441
156 5KSP GDP 0.00001594 0.53083 4.73684
157 1M7G AV2 0.000002996 0.5231 4.73934
158 1M7G ADX 0.00007361 0.52195 4.73934
159 1M7G ADP 0.0002124 0.49654 4.73934
160 2X77 GDP 0.0000005792 0.59722 4.7619
161 4P32 ADP 0.0002832 0.42109 4.81928
162 1VG0 GDP 0.0000004459 0.59725 4.83092
163 1VG8 GNP 0.000001728 0.59199 4.83092
164 2IL4 COA 0.003976 0.41819 4.85437
165 5DI3 GNP 0.0000005881 0.52443 4.86486
166 2BD0 NAP 0.02626 0.40111 4.91803
167 5SZH GNP 0.00000267 0.58304 4.92611
168 1RYH GNP 0.00001277 0.52821 4.92611
169 3CPJ GDP 0.000001439 0.5742 4.93274
170 2EW1 GNP 0.00000331 0.57164 4.97512
171 5IRC GDP 0.0001263 0.48341 4.97512
172 5HCN GCP 0.0000002846 0.61145 4.98084
173 4YMU ATP 0.00001915 0.48765 5
174 1JWY GDP 0.0000001721 0.61599 5.01672
175 5M04 GDP 0.0000001066 0.58233 5.01672
176 3DC4 ADP 0.00001307 0.48304 5.01672
177 4YS0 ADP 0.00004868 0.47986 5.01672
178 1JWY ADP 0.000135 0.47364 5.01672
179 1BG2 ADP 0.000002361 0.46915 5.01672
180 3IO3 ADP 0.004633 0.4478 5.01672
181 5MEX SZZ 0.0244 0.40691 5.01672
182 5MEX PAP 0.01114 0.40173 5.01672
183 4BAS GNP 0.0000006338 0.60244 5.02513
184 1UJ2 ADP 0.01159 0.43762 5.15873
185 1UJ2 C5P 0.02856 0.41732 5.15873
186 2ZTS ADP 0.005448 0.44428 5.17928
187 4KFU ACP 0.000006541 0.48449 5.18868
188 1OE0 TTP 0.004385 0.43076 5.21739
189 1R0X ATP 0.0001954 0.45197 5.24476
190 1G7C 5GP 0.000007095 0.55484 5.31915
191 4WOP CTP 0.00007703 0.50339 5.33333
192 3SBD GNP 0.00009791 0.42349 5.34759
193 4D0N GDP 0.000003249 0.53423 5.35117
194 4ITR GDP 0.00002382 0.52439 5.35117
195 1V8K ANP 0.00004554 0.51666 5.35117
196 3RLF ANP 0.0005263 0.46891 5.35117
197 2CE7 ADP 0.01249 0.42028 5.35117
198 1VG1 GDP 0.0000002254 0.59516 5.40541
199 1VG9 GDP 0.000000257 0.59283 5.40541
200 3RWO GDP 0.000001934 0.58738 5.40541
201 1YZN GNP 0.000003817 0.46095 5.40541
202 1G6H ADP 0.0000005511 0.48627 5.44747
203 1NF3 GNP 0.00007104 0.4233 5.46875
204 1KY3 GDP 0.0000005392 0.59351 5.49451
205 2F9L GDP 0.000001607 0.49815 5.52764
206 4XTR ATP 0.00005139 0.51606 5.52995
207 4XTR ADP 0.00003709 0.51556 5.52995
208 4XVU ATP 0.00006471 0.51139 5.52995
209 2G77 GDP 0.000001198 0.58097 5.55556
210 5JCZ GDP 0.000001064 0.53635 5.58659
211 5J1J ANP 0.00001919 0.53602 5.61404
212 2WIC GNP 0.04007 0.4076 5.61798
213 4TMK T5A 0.003301 0.44504 5.6338
214 4LX0 BEF GDP 0.000003796 0.5758 5.64972
215 3B7G ANP 0.00003819 0.49942 5.65217
216 4QOS ADP 0.0001802 0.47646 5.66038
217 4J0Q GDP 0.0000001295 0.57923 5.68562
218 1TAD ALF 0.00001025 0.55941 5.68562
219 1TAD GDP 0.00001025 0.55941 5.68562
220 1X6V ADP 0.00009268 0.51374 5.68562
221 3EZ2 ADP 0.0001094 0.50547 5.68562
222 3IUY AMP 0.0003356 0.45056 5.70175
223 3H86 AP5 0.0003355 0.49464 5.72917
224 4LHW GNP 0.000004447 0.46585 5.74713
225 3B5J 12D 0.00003367 0.53829 5.76132
226 1JJ7 ADP 0.0000004491 0.65232 5.76923
227 1Z06 GNP 0.000003436 0.5733 5.82011
228 2B8T THM 0.005807 0.41847 5.8296
229 1TU3 GNP 0.000003099 0.57773 5.84795
230 3W5J GDP 0.000001003 0.6281 5.88235
231 1R2Q GNP 0.000005423 0.58184 5.88235
232 2A9K GDP 0.000003081 0.56226 5.88235
233 5O2T GSP 0.000004495 0.45926 5.88235
234 1D2N ANP 0.0006568 0.4169 5.88235
235 4R98 GNH 0.000005787 0.52532 5.90406
236 2W58 ADP 0.0000004886 0.48732 5.94059
237 1NRJ GTP 0.000001071 0.5891 5.9633
238 4D81 ADP 0.0002603 0.47189 6.00707
239 3FWY ADP 0.00000075 0.59025 6.02007
240 4ZKD GDP 0.000004482 0.57239 6.02007
241 1SVM ATP 0.001389 0.47795 6.02007
242 1XX6 ADP 0.0002027 0.42619 6.02007
243 3KTA AP5 0.00008534 0.49384 6.04396
244 1F6B GDP 0.0000006108 0.57668 6.06061
245 1YZG GDP 0.0000001428 0.60394 6.14525
246 5MVR ADP 0.00005954 0.48117 6.17284
247 3A1S GDP 0.00000296 0.5475 6.20155
248 4ZNL BEF ADP 0.00002905 0.50251 6.20438
249 1S8F GDP 0.00000351 0.45586 6.21469
250 2BEK ATP 0.001058 0.47415 6.22568
251 5H67 ATP 0.002054 0.42186 6.25
252 2IXE ATP 0.0002114 0.48531 6.27306
253 1IWE IMP 0.000008646 0.62668 6.35452
254 4LC1 GDP 0.0000001227 0.59467 6.35452
255 3WYA GDP 0.0000005177 0.56955 6.35452
256 1G7S GDP 0.000003357 0.56203 6.35452
257 5FTB ANP 0.00006532 0.4963 6.35452
258 5I0H ADP BEF 0.0002349 0.48103 6.35452
259 3NHB ADP 0.00001265 0.47308 6.35452
260 3FVQ ATP 0.0005251 0.4649 6.35452
261 5FHD ADP ALF 0.00007381 0.45231 6.35452
262 4IOK XPO 0.02951 0.41378 6.35452
263 4IOK ADP 0.03538 0.41378 6.35452
264 1GRN GDP 0.00003753 0.51273 6.40394
265 1VHT BA3 0.0001446 0.48076 6.42202
266 4MKF AP5 0.000757 0.48486 6.45161
267 3CNL GNP 0.00000008869 0.58464 6.48855
268 2ZEJ GDP 0.0000002066 0.49581 6.52174
269 1LVG ADP 0.000005101 0.50117 6.56566
270 1TX4 ALF GDP 0.0001082 0.4372 6.56566
271 3Q72 GNP 0.0000002056 0.57285 6.62651
272 4R2I ANP 0.0009181 0.42406 6.66667
273 4QRH 0O2 0.005762 0.41682 6.66667
274 4B47 GDP 0.0000003551 0.62626 6.68896
275 2XT3 ADP 0.00000195 0.61292 6.68896
276 2C78 GNP 0.000002767 0.57273 6.68896
277 2C77 GNP 0.000003271 0.56672 6.68896
278 5FG3 GDP 0.0000005463 0.55664 6.68896
279 5IFS ADP 0.00009279 0.48944 6.68896
280 5LB3 ADP 0.00002733 0.4891 6.68896
281 3EWA ANP 0.00003917 0.48749 6.68896
282 2B8W ALF 5GP 0.0002361 0.48714 6.68896
283 2QEN ADP 0.0001646 0.48345 6.68896
284 5N69 ADP 0.0001947 0.4776 6.68896
285 2JLR ANP 0.0006131 0.45502 6.68896
286 2WHX ADP 0.00004599 0.45156 6.68896
287 2Z5F A3P 0.004879 0.42017 6.71141
288 5G41 AP5 0.0009135 0.48512 6.72646
289 2XTZ GSP 0.0000117 0.45366 6.77966
290 3GJ0 GDP 0.0000003568 0.61624 6.78733
291 3GJ5 GDP 0.0000005969 0.59662 6.78733
292 3GJ8 GDP 0.0000005041 0.57998 6.78733
293 3GJ3 GDP 0.0000003519 0.57503 6.78733
294 3GJ4 GDP 0.000000528 0.5684 6.78733
295 1L2T ATP 0.0003553 0.47881 6.80851
296 3NKV GNP 0.00000375 0.46965 6.85714
297 4MKG AP5 0.0008864 0.48032 6.91244
298 1ZD9 GDP 0.0000002556 0.61478 6.91489
299 5BXQ GDP 0.0000003028 0.58965 6.94444
300 1IBR GNP 0.000003473 0.57763 6.94444
301 3TNF GNP 0.000002228 0.58895 7.02341
302 3TKL GTP 0.000001956 0.58478 7.02341
303 3SFV GDP 0.000002848 0.5695 7.02341
304 1P9B GDP 0.0003172 0.50361 7.02341
305 1IN4 ADP 0.0001539 0.4872 7.02341
306 4ITM ATP 0.002528 0.4405 7.02341
307 1Z08 GNP 0.000009013 0.55134 7.05882
308 3AQ4 GDP 0.0000001307 0.60517 7.06522
309 1Y63 ADP 0.000002011 0.54125 7.06522
310 4E03 ADP 0.000001825 0.55594 7.28155
311 1WF3 GNP 0.000001834 0.59076 7.35786
312 1D2E GDP 0.00000178 0.55315 7.35786
313 1SQ5 ADP 0.00003366 0.51586 7.35786
314 5HR5 ADP 0.00006402 0.50215 7.35786
315 1OYY AGS 0.0005911 0.46401 7.35786
316 4OHY ANP 0.000215 0.41107 7.35786
317 5HR5 FLC 0.02529 0.40078 7.35786
318 3PCR GTP 0.000001102 0.59393 7.40741
319 4C4P GNP 0.000003015 0.58054 7.47664
320 2ZE7 DST 0.003786 0.43379 7.50988
321 2ZE7 AMP 0.003531 0.43365 7.50988
322 2ZFZ ARG 0.0241 0.41523 7.59494
323 1YRB GDP 0.0000009468 0.58243 7.63359
324 3Q85 GNP 0.0000000997 0.59756 7.69231
325 3GJX GTP 0.000004409 0.57272 7.69231
326 3CX8 GSP 0.0000109 0.55814 7.69231
327 3AB3 GDP 0.000007609 0.5498 7.69231
328 1ZCB GDP 0.00002157 0.53802 7.69231
329 4LYA ATP 0.00002098 0.52533 7.69231
330 4V0K GDP 0.0000004528 0.507 7.69231
331 1B7T ADP 0.0003068 0.46606 7.69231
332 1O3Y GTP 0.0000009389 0.59718 7.83133
333 2J59 GTP 0.000001242 0.59151 7.83133
334 3E5H GNP 0.00001461 0.4522 7.86517
335 2W83 GTP 0.000001471 0.58808 7.87879
336 1S9D GDP 0.0000002531 0.6138 7.92683
337 1RE0 GDP 0.0000001031 0.58469 7.92683
338 2HF9 GSP 0.000007588 0.5594 7.9646
339 3N5C GDP 0.0000001357 0.59206 8.02469
340 2FNA ADP 0.00005192 0.51362 8.02676
341 2IS6 ADP 0.00002072 0.49862 8.02676
342 2BME GNP 0.000002743 0.58022 8.06452
343 4KAX GTP 0.0000007138 0.60004 8.07453
344 5VGR GDP 0.0001212 0.46301 8.12065
345 1Z0K GTP 0.000002164 0.49411 8.13953
346 3GJ7 GDP 0.0000004259 0.61261 8.16327
347 2OFW ADX 0.000115 0.52289 8.17308
348 1UPT GTP 0.0000002854 0.61852 8.18713
349 5EE5 GTP 0.0000002994 0.61756 8.18713
350 4QM7 GTP 0.00001744 0.53637 8.18713
351 3P4X ADP 0.00001018 0.50826 8.3612
352 3FKQ ATP 0.004807 0.445 8.3612
353 1QHG ATP 0.001729 0.43461 8.3612
354 5BQ5 ADP BEF 0.0001121 0.48574 8.46561
355 3R96 AMP 0.03116 0.40161 8.51064
356 3R96 ACO 0.03116 0.40161 8.51064
357 1KK8 BEF ADP 0.0001461 0.45951 8.63309
358 3ZQ6 ADP ALF 0.00002879 0.53414 8.64198
359 4XSH GSP 0.00002896 0.5205 8.6758
360 1DAR GDP 0.0000003714 0.57426 8.69565
361 1W0J ADP 0.000002797 0.56111 8.69565
362 1W0J ADP BEF 0.000557 0.46156 8.69565
363 1WA5 GTP 0.000005418 0.43159 8.69565
364 3REF GDP 0.00002102 0.46603 8.76289
365 3VX3 ADP 0.00007719 0.50095 8.87097
366 2CK3 ADP 0.0003942 0.47477 8.90411
367 2CK3 ANP 0.0006336 0.45899 8.90411
368 2KIN ADP 0.00000199 0.47026 9
369 1TQ4 GDP 0.0000001083 0.63505 9.0301
370 1Z6T ADP 0.00003033 0.51695 9.0301
371 2FSH ANP 0.00001702 0.49403 9.0301
372 5XDR ADP 0.0001037 0.49334 9.0301
373 3T12 GDP ALF 0.000006698 0.55491 9.09091
374 3T1O GDP 0.000004922 0.54684 9.09091
375 3DOE GTP 0.0000009782 0.50649 9.09091
376 1AQU A3P 0.005558 0.41367 9.09091
377 1KO8 6PG 0.00006235 0.50521 9.14286
378 1JI0 ATP 0.00001089 0.56273 9.16667
379 4NON GDP 0.000003286 0.58092 9.23077
380 2JAQ DCP 0.002345 0.43861 9.26829
381 2EFE GNH 0.0000006397 0.59015 9.3633
382 3RC3 ANP 0.006349 0.41981 9.36455
383 4CVN ADP 0.000001596 0.60432 9.42408
384 1OIX GDP 0.000002074 0.58595 9.42408
385 1OIV GDP 0.000003048 0.57807 9.42408
386 1M2O GNP 0.000001861 0.58816 9.47368
387 1Z0F GDP 0.0000006316 0.59548 9.49721
388 2PEZ DAT 0.0001318 0.51136 9.49721
389 2PEZ GGZ 0.0001318 0.51136 9.49721
390 1FQK GDP 0.000009731 0.47389 9.52381
391 1Z83 AP5 0.000844 0.47379 9.69388
392 1T5C ADP 0.000002939 0.46524 9.699
393 2CJW GDP 0.00000003775 0.66237 9.89583
394 3LXR GDP 0.00001072 0.53163 9.89583
395 3UIE ANP 0.00001196 0.52949 10
396 2QN6 GDP 0.0000003511 0.6265 10.0334
397 4RD0 GDP 0.000002052 0.57876 10.0334
398 2BIF ANP 0.0001147 0.51584 10.0334
399 2BIF SIN 0.0002009 0.51584 10.0334
400 1IHU AF3 0.000003271 0.49329 10.0334
401 1IHU ADP 0.000003273 0.484 10.0334
402 1ZJ6 G3D 0.0000001619 0.62275 10.1604
403 1Z0J GTP 0.000002057 0.5884 10.1695
404 3FB4 AP5 0.0005401 0.49096 10.1852
405 1JJV ATP 0.000003788 0.59117 10.1942
406 4LPS GDP 0.000001194 0.56359 10.3306
407 4OI4 ATP 0.0008957 0.45813 10.4348
408 2PZE ATP 0.000004135 0.47527 10.4803
409 4NU0 AP5 0.000507 0.48986 10.5991
410 2V7Q ATP 0.000002507 0.56002 10.6061
411 2V7Q ADP 0.0002894 0.45236 10.6061
412 2WJG GDP 0.0000006616 0.56513 10.6383
413 2XTN GTP 0.0000002124 0.62729 10.6838
414 4TTQ ATP 0.00001344 0.50814 10.6977
415 3BFV ADP 0.00000121 0.59116 10.7011
416 5I34 GDP 0.00000005893 0.62011 10.7023
417 2FJU GSP 0.00004154 0.51577 10.7023
418 5H56 ADP 0.00002094 0.54645 10.7692
419 5H56 TYD 0.00002094 0.54645 10.7692
420 2QTV GNP 0.00000119 0.59489 10.7784
421 2HT6 GDP 0.00000004804 0.5973 10.9195
422 4YLG GDP 0.0000002231 0.61427 10.9827
423 3LRE ADP 0.000001632 0.61962 11.0368
424 2OM2 GDP 0.00001131 0.48971 11.1111
425 2BCG GDP 0.00000228 0.5236 11.165
426 1GP2 GDP 0.00001757 0.46648 11.2676
427 1Z2A GDP 0.000003451 0.48657 11.3095
428 5LTJ ADP 0.0001223 0.4754 11.3712
429 5UFQ GNP 0.000002083 0.58586 11.4754
430 1CXZ GSP 0.00004688 0.51568 11.6279
431 2GJ8 ALF GDP 0.000002789 0.46521 11.6279
432 4BQS ADP 0.00007492 0.52783 11.9318
433 4BQS K2Q 0.00007492 0.52783 11.9318
434 2CHG ANP 0.0002246 0.47729 11.9469
435 2WJH GDP 0.000001414 0.56138 12.0482
436 2WJH FLC 0.00001965 0.51978 12.0482
437 4PPF FLC 0.0000003026 0.67094 12.2857
438 2Y8E GNP 0.00000574 0.46395 12.2905
439 1KK1 GNP 0.0000002186 0.57131 12.3746
440 5G5G MCN 0.02378 0.40746 12.3746
441 2A5F GTP 0.0000009836 0.59877 12.5714
442 3X1Z GNP 0.000008634 0.56097 12.5749
443 4HDQ GNP 0.00001205 0.55206 12.5749
444 4HDO GNP 0.000007173 0.45284 12.5749
445 3ZIA ADP 0.00001116 0.53387 12.6984
446 3ZIA ATP 0.000009499 0.52468 12.6984
447 3MGB PAP 0.008708 0.40851 12.709
448 2FFQ GSP 0.000004318 0.57315 12.8655
449 1ZIN AP5 0.0003107 0.50285 12.9032
450 4D0G GTP 0.00000138 0.58675 13.0435
451 4DCT GDP 0.000001238 0.58201 13.0435
452 5E5U MLI 0.01022 0.43043 13.0653
453 4KVG GTP 0.000004749 0.56899 13.0769
454 1UAD GNP 0.000007646 0.55925 13.1313
455 1NVU GTP 0.0000097 0.55651 13.253
456 4LJ9 ACP 0.002979 0.43077 13.2743
457 2W2X GSP 0.000029 0.52297 13.5135
458 5KDO GDP 0.0000228 0.47903 13.5135
459 1GOT GDP 0.0000171 0.53602 13.6986
460 2QZ4 ADP 0.0001876 0.47568 13.7405
461 3DKP ADP 0.00001783 0.50423 13.8776
462 1HTW ADP 0.00008776 0.48236 13.9241
463 4ZG4 VO4 ADP 0.0001348 0.49652 14.0468
464 3BER AMP 0.0002779 0.45438 14.0562
465 1FQJ GDP 0.000006611 0.55762 14.2857
466 3QBT GNP 0.000002961 0.47222 14.2857
467 3WYF GTP 0.000002866 0.58375 14.3813
468 5UWS GNP 0.000003168 0.58168 14.3813
469 5UWP GNP 0.000003181 0.58159 14.3813
470 5DHF GNP 0.000003208 0.57926 14.3813
471 5UWI GNP 0.000003295 0.57871 14.3813
472 5UWR GNP 0.000003472 0.57764 14.3813
473 5UWT GNP 0.000003508 0.57742 14.3813
474 5DI9 GNP 0.000004027 0.57672 14.3813
475 4HAT GNP 0.000004605 0.57395 14.3813
476 2ZR9 DTP 0.00002257 0.49601 14.3813
477 5UWO GNP 0.000002346 0.46771 14.3813
478 5UWH GNP 0.000002731 0.46618 14.3813
479 5UWQ GNP 0.000002815 0.46539 14.3813
480 5DIF GNP 0.000003094 0.46393 14.3813
481 5UWJ GNP 0.000003555 0.4632 14.3813
482 5UWW GNP 0.000003507 0.46296 14.3813
483 3WYG GTP 0.000006671 0.44769 14.3813
484 4FCW ADP 0.001647 0.42821 14.4695
485 3A4M ADP 0.000001399 0.52073 14.6154
486 3TK1 GDP 0.00000001833 0.59882 14.7157
487 2GK6 ADP 0.00003317 0.47185 14.7157
488 4V03 ADP 0.00004855 0.5021 14.786
489 3BOS CDP 0.0001199 0.49677 14.876
490 4YDS ATP 0.00002009 0.54946 15.3509
491 2A5J GDP 0.000001066 0.57674 15.3846
492 5J1S ATP 0.0002874 0.4135 15.8451
493 3QF7 ANP 0.0001922 0.48277 16
494 1QHH ATP 0.004744 0.41672 16.1677
495 4JLV ADP 0.00005487 0.4722 16.3569
496 3T34 GDP 0.000001797 0.49567 16.7224
497 3RAB GNP 0.000006974 0.56113 17.1598
498 3MJH GTP 0.000004368 0.46776 17.6471
499 1NN5 2DT 0.03936 0.41498 17.6744
500 1NN5 ANP 0.03936 0.41498 17.6744
501 1EK0 GNP 0.000008245 0.45925 18.2353
502 1D5C GDP 0.0000009132 0.5518 18.5185
503 2HV8 GTP 0.000003381 0.57595 18.75
504 1R4A GNP 0.0000001673 0.52057 18.7879
505 2C5L GTP 0.000005678 0.45686 19.0751
506 5E95 GDP 0.000002931 0.53159 19.6429
507 1W5T ANP 0.00124 0.44767 19.7324
508 1W5T ADP 0.001493 0.43975 19.7324
509 1LFD GNP 0.000005753 0.56507 19.7605
510 1CLU DBG 0.00001201 0.57551 19.8795
511 2UZI GTP 0.000004187 0.57157 19.8795
512 1WQ1 GDP 0.000004661 0.5647 19.8795
513 3DDC GNP 0.00001129 0.55339 19.8795
514 1NVV GNP 0.000008728 0.45091 19.8795
515 3IIJ ADP 0.000006083 0.558 21.1111
516 4IEE AGS 0.00007734 0.51278 21.7391
517 3DZD ADP 0.0004262 0.45043 22.7425
518 2CBZ ATP 0.00000188 0.6222 24.4726
519 3FYH ADP 0.0002043 0.49009 25.0836
520 4HI0 GDP 0.000001852 0.57812 25.1256
521 4H1V GNP 0.0000007955 0.58908 26.087
522 2XAU ADP 0.0002332 0.47142 26.087
523 2D7C GTP 0.000002395 0.58301 26.1905
524 1Z0A GDP 0.0000009959 0.57807 27.0115
525 4ZI2 GNP 0.0000009747 0.59376 27.8947
526 4GOJ GNP 0.0000008425 0.5967 28.0423
527 2GDJ ANP 0.0001539 0.46467 28.4091
528 5UWU GNP 0.000003127 0.57979 30
529 3BC1 GNP 0.000002732 0.58031 30.5085
530 1J2J GTP 0.000001175 0.50267 31.1111
531 1GUA GNP 0.000005962 0.45451 33.3333
532 3KUD GDP 0.000004499 0.56033 34.5679
533 3WY9 GDP 0.0000007705 0.60993 43.75
Pocket No.: 2; Query (leader) PDB : 5L3V; Ligand: GDP; Similar sites found: 5
This union binding pocket(no: 2) in the query (biounit: 5l3v.bio2) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4GID 0GH 0.02354 0.41957 2.34114
2 1PN0 FAD 0.04178 0.40375 2.34114
3 1PN0 IPH 0.04319 0.40375 2.34114
4 1G6O ADP 0.0266 0.41892 4.34783
5 1Q19 APC 0.01268 0.40266 4.34783
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