Receptor
PDB id Resolution Class Description Source Keywords
5L6G 1.79 Å EC: 1.1.3.- XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA COMPLEX WITH XYLOSE MYCELIOPHTHORA THERMOPHILA (STRAIN ATCBCRC 31852 / DSM 1799) FAD CAZY OLIGOSACCHARIDE XYLOSE XYLAN OXIDOREDUCTASE
Ref.: DISCOVERY OF A XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA C1. J.BIOL.CHEM. V. 291 23709 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAG NAG A:504;
A:502;
Invalid;
Invalid;
none;
none;
submit data
408.404 n/a O=C(N...
XYS A:512;
Valid;
none;
submit data
150.13 C5 H10 O5 C1[C@...
FAD A:501;
Invalid;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
XYP A:511;
A:509;
A:510;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
150.13 C5 H10 O5 C1[C@...
NAG A:508;
A:506;
A:507;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5L6G 1.79 Å EC: 1.1.3.- XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA COMPLEX WITH XYLOSE MYCELIOPHTHORA THERMOPHILA (STRAIN ATCBCRC 31852 / DSM 1799) FAD CAZY OLIGOSACCHARIDE XYLOSE XYLAN OXIDOREDUCTASE
Ref.: DISCOVERY OF A XYLOOLIGOSACCHARIDE OXIDASE FROM MYCELIOPHTHORA THERMOPHILA C1. J.BIOL.CHEM. V. 291 23709 2016
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 5L6F - BXP C10 H18 O9 C1[C@H]([C....
2 5L6G - XYS C5 H10 O5 C1[C@H]([C....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 5L6F - BXP C10 H18 O9 C1[C@H]([C....
2 5L6G - XYS C5 H10 O5 C1[C@H]([C....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5L6F - BXP C10 H18 O9 C1[C@H]([C....
2 5L6G - XYS C5 H10 O5 C1[C@H]([C....
3 2AXR - ABL C12 H21 N O10 C([C@@H]1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: XYS; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 RIP 1 1
2 XYS 1 1
3 ARB 1 1
4 HSY 1 1
5 ARA 1 1
6 XYP 1 1
7 LXC 1 1
8 0MK 1 1
9 XYP XYS 0.414634 0.84375
10 BXP 0.414634 0.84375
11 XYS XYP 0.414634 0.84375
12 FU4 0.4 0.896552
Ligand no: 2; Ligand: XYP; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 RIP 1 1
2 XYS 1 1
3 ARB 1 1
4 HSY 1 1
5 ARA 1 1
6 XYP 1 1
7 LXC 1 1
8 0MK 1 1
9 XYP XYS 0.414634 0.84375
10 BXP 0.414634 0.84375
11 XYS XYP 0.414634 0.84375
12 FU4 0.4 0.896552
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5L6G; Ligand: XYS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5l6g.bio1) has 4 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5L6G; Ligand: XYP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5l6g.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5L6G; Ligand: XYP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 5l6g.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 5L6G; Ligand: XYP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5l6g.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
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