Receptor
PDB id Resolution Class Description Source Keywords
5M5V 1.96 Å NON-ENZYME: OTHER CLATHRIN HEAVY CHAIN N-TERMINAL DOMAIN BOUND TO A CLATHRIN-B FROM HEPATITIS D VIRUS LARGE ANTIGEN (CLADE 2) BOS TAURUS ENDOCYTOSIS HEPATITIS DELTA VIRUS HDAG-L
Ref.: CELLULAR AND VIRAL PEPTIDES BIND MULTIPLE SITES ON N-TERMINAL DOMAIN OF CLATHRIN. TRAFFIC V. 18 44 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SER PRO ARG LEU PRO LEU LEU GLU SER I:4;
H:2;
J:4;
G:2;
F:4;
E:4;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Atoms found LESS than expected: % Diff = 0.606;
Atoms found LESS than expected: % Diff = 0.31;
Atoms found LESS than expected: % Diff = 0.606;
Atoms found LESS than expected: % Diff = 0.31;
Atoms found LESS than expected: % Diff = 0.394;
Atoms found LESS than expected: % Diff = 0.394;
submit data
n/a n/a
GOL A:401;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1UTC 2.3 Å NON-ENZYME: OTHER CLATHRIN TERMINAL DOMAIN COMPLEXED WITH TLPWDLWTT BOS TAURUS ENDOCYTOSIS CLATHRIN CYTOSKELETON
Ref.: TWO DISTINCT INTERACTION MOTIFS IN AMPHIPHYSIN BIND INDEPENDENT SITES ON THE CLATHRIN TERMINAL DOMAIN BETA-PROPELLER. NAT. STRUCT. MOL. BIOL. V. 11 242 2004
Members (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 5M5S - GLU THR LEU LEU ASP LEU ASP PHE ASP PRO n/a n/a
2 5M5R - CYS GLY ASP LEU LEU ASN LEU ASP LEU GLY n/a n/a
3 5M5T - GLU THR LEU LEU ASP LEU ASP PHE LEU GLU n/a n/a
4 5M5V - SER PRO ARG LEU PRO LEU LEU GLU SER n/a n/a
5 6E4L - HRS C10 H7 Br N2 O4 S2 c1cc(ccc1N....
6 2XZG - VH1 C19 H13 N2 O5 S c1cc2cc(cc....
7 4G55 - VH2 C20 H15 Br N2 O3 S2 c1ccc2c(c1....
8 5M5U - SER ASP ILE LEU PHE PRO ALA ASP SER n/a n/a
9 1UTC Kd = 28 uM THR LEU PRO TRP ASP LEU TRP THR THR n/a n/a
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 5M5S - GLU THR LEU LEU ASP LEU ASP PHE ASP PRO n/a n/a
2 5M5R - CYS GLY ASP LEU LEU ASN LEU ASP LEU GLY n/a n/a
3 5M5T - GLU THR LEU LEU ASP LEU ASP PHE LEU GLU n/a n/a
4 5M5V - SER PRO ARG LEU PRO LEU LEU GLU SER n/a n/a
5 6E4L - HRS C10 H7 Br N2 O4 S2 c1cc(ccc1N....
6 2XZG - VH1 C19 H13 N2 O5 S c1cc2cc(cc....
7 4G55 - VH2 C20 H15 Br N2 O3 S2 c1ccc2c(c1....
8 5M5U - SER ASP ILE LEU PHE PRO ALA ASP SER n/a n/a
9 1UTC Kd = 28 uM THR LEU PRO TRP ASP LEU TRP THR THR n/a n/a
50% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 5M5S - GLU THR LEU LEU ASP LEU ASP PHE ASP PRO n/a n/a
2 5M5R - CYS GLY ASP LEU LEU ASN LEU ASP LEU GLY n/a n/a
3 5M5T - GLU THR LEU LEU ASP LEU ASP PHE LEU GLU n/a n/a
4 5M5V - SER PRO ARG LEU PRO LEU LEU GLU SER n/a n/a
5 6E4L - HRS C10 H7 Br N2 O4 S2 c1cc(ccc1N....
6 2XZG - VH1 C19 H13 N2 O5 S c1cc2cc(cc....
7 4G55 - VH2 C20 H15 Br N2 O3 S2 c1ccc2c(c1....
8 5M5U - SER ASP ILE LEU PHE PRO ALA ASP SER n/a n/a
9 1UTC Kd = 28 uM THR LEU PRO TRP ASP LEU TRP THR THR n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: SER PRO ARG LEU PRO LEU LEU GLU SER; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: SER PRO ARG LEU PRO LEU LEU GLU SER; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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