Receptor
PDB id Resolution Class Description Source Keywords
5MUJ 1.37 Å EC: 7.-.-.- BT0996 RGII CHAIN B COMPLEX BACTEROIDES THETAIOTAOMICRON (STRAIN A/ DSM 2079 / NCTC 10582 / E50 / VPI-5482) GLYCOSIDE HYDROLASE ARABINOFURANOSIDASE PLANT PECTIN RGIIHYDROLASE
Ref.: COMPLEX PECTIN METABOLISM BY GUT BACTERIA REVEALS N CATALYTIC FUNCTIONS. NATURE V. 544 65 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACT A:409;
Invalid;
none;
submit data
59.044 C2 H3 O2 CC(=O...
RAM ARA RAM 8OQ RAM GAL XXM 8PK A:404;
Valid;
none;
submit data
1246.15 n/a O=C([...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5MUJ 1.37 Å EC: 7.-.-.- BT0996 RGII CHAIN B COMPLEX BACTEROIDES THETAIOTAOMICRON (STRAIN A/ DSM 2079 / NCTC 10582 / E50 / VPI-5482) GLYCOSIDE HYDROLASE ARABINOFURANOSIDASE PLANT PECTIN RGIIHYDROLASE
Ref.: COMPLEX PECTIN METABOLISM BY GUT BACTERIA REVEALS N CATALYTIC FUNCTIONS. NATURE V. 544 65 2017
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 293 families.
1 5MUJ - RAM ARA RAM 8OQ RAM GAL XXM 8PK n/a n/a
2 5MUI - FUB RAM ARA RAM GAL 8PK 8OQ RAM n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 250 families.
1 5MUJ - RAM ARA RAM 8OQ RAM GAL XXM 8PK n/a n/a
2 5MUI - FUB RAM ARA RAM GAL 8PK 8OQ RAM n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 5MUJ - RAM ARA RAM 8OQ RAM GAL XXM 8PK n/a n/a
2 5MUI - FUB RAM ARA RAM GAL 8PK 8OQ RAM n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RAM ARA RAM 8OQ RAM GAL XXM 8PK; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 RAM ARA RAM 8OQ RAM GAL XXM 8PK 1 1
2 FUB RAM ARA RAM GAL 8PK 8OQ RAM 0.739437 1
3 RAM ARA GAL 8PK 8OQ RAM 0.554795 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5MUJ; Ligand: RAM ARA RAM 8OQ RAM GAL XXM 8PK; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5muj.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
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