Receptor
PDB id Resolution Class Description Source Keywords
5O0Z 1.28 Å NON-ENZYME: OTHER STRUCTURE OF LASPARTOMYCIN C IN COMPLEX WITH GERANYL-PHOSPHA STREPTOMYCES VIRIDOCHROMOGENES ANTIBIOTIC COMPLEX ANTIBIOTIC
Ref.: A HIGH-RESOLUTION CRYSTAL STRUCTURE THAT REVEALS MO DETAILS OF TARGET RECOGNITION BY THE CALCIUM-DEPEND LIPOPEPTIDE ANTIBIOTIC LASPARTOMYCIN C. ANGEW. CHEM. INT. ED. ENGL. V. 56 16546 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACY A:106;
B:104;
A:105;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
60.052 C2 H4 O2 CC(=O...
CA A:102;
A:103;
B:103;
B:102;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
40.078 Ca [Ca+2...
CL A:104;
Invalid;
none;
submit data
35.453 Cl [Cl-]
9GB A:101;
B:101;
Valid;
Valid;
none;
none;
submit data
194.165 C7 H15 O4 P CCC/C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5O0Z 1.28 Å NON-ENZYME: OTHER STRUCTURE OF LASPARTOMYCIN C IN COMPLEX WITH GERANYL-PHOSPHA STREPTOMYCES VIRIDOCHROMOGENES ANTIBIOTIC COMPLEX ANTIBIOTIC
Ref.: A HIGH-RESOLUTION CRYSTAL STRUCTURE THAT REVEALS MO DETAILS OF TARGET RECOGNITION BY THE CALCIUM-DEPEND LIPOPEPTIDE ANTIBIOTIC LASPARTOMYCIN C. ANGEW. CHEM. INT. ED. ENGL. V. 56 16546 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 5O0Z - 9GB C7 H15 O4 P CCC/C(=C/C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 5O0Z - 9GB C7 H15 O4 P CCC/C(=C/C....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 5O0Z - 9GB C7 H15 O4 P CCC/C(=C/C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: 9GB; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 9GB 1 1
2 0K3 0.55814 0.868421
3 DSL 0.55814 0.868421
4 FJP 0.55814 0.891892
5 4LR 0.542857 0.828571
6 GPP 0.42 0.846154
7 ZTP 0.415094 0.804878
8 FPP 0.415094 0.825
9 VTP 0.415094 0.804878
10 GRG 0.415094 0.825
11 OTP 0.415094 0.804878
12 10D 0.413043 0.75
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5O0Z; Ligand: 9GB; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5o0z.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5O0Z; Ligand: 9GB; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5o0z.bio1) has 7 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5O0Z; Ligand: 9GB; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 5o0z.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 5O0Z; Ligand: 9GB; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5o0z.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
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