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Receptor
PDB id Resolution Class Description Source Keywords
5T46 1.53 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF THE HUMAN EIF4E-EIF4G COMPLEX HOMO SAPIENS TRANSLATION GENE REGULATION CAP BINDING PROTEIN 4E-BINDINPROTEIN TRANSLATION INITIATION EIF4F
Ref.: THE STRUCTURES OF EIF4E-EIF4G COMPLEXES REVEAL AN E INTERFACE TO REGULATE TRANSLATION INITIATION. MOL.CELL V. 64 467 2016
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL C:304;
C:305;
C:303;
C:306;
C:302;
A:303;
A:302;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
MGP C:301;
A:301;
Valid;
Valid;
none;
none;
submit data
538.215 C11 H19 N5 O14 P3 C[n+]...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5T46 1.53 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF THE HUMAN EIF4E-EIF4G COMPLEX HOMO SAPIENS TRANSLATION GENE REGULATION CAP BINDING PROTEIN 4E-BINDINPROTEIN TRANSLATION INITIATION EIF4F
Ref.: THE STRUCTURES OF EIF4E-EIF4G COMPLEXES REVEAL AN E INTERFACE TO REGULATE TRANSLATION INITIATION. MOL.CELL V. 64 467 2016
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 5T46 - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 5T46 - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5T46 - MGP C11 H19 N5 O14 P3 C[n+]1cn(c....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MGP; Similar ligands found: 81
No: Ligand ECFP6 Tc MDL keys Tc
1 MGP 1 1
2 6G0 0.986667 1
3 G7M 0.794872 0.987013
4 GTG 0.741935 0.974684
5 GTA 0.71875 0.974684
6 MG7 0.653846 0.884615
7 GTP 0.619565 0.961039
8 MGO 0.619565 0.901235
9 GDP 7MG 0.592233 0.949367
10 GP3 0.55914 0.936709
11 GDP 0.553191 0.961039
12 GSP 0.525253 0.91358
13 MGQ 0.514852 0.925
14 G1R 0.5 0.948718
15 MGV 0.5 0.880952
16 GAV 0.5 0.925
17 GNH 0.5 0.948718
18 01G 0.495327 0.870588
19 9GM 0.49505 0.936709
20 GNP 0.49505 0.936709
21 HFD 0.494845 0.841463
22 HEJ 0.494737 0.884615
23 ATP 0.494737 0.884615
24 AQP 0.489583 0.884615
25 5FA 0.489583 0.884615
26 GCP 0.485149 0.936709
27 G5P 0.477477 0.936709
28 7DT 0.474227 0.871795
29 G2R 0.471698 0.925
30 5GP 0.46875 0.948052
31 G 0.46875 0.948052
32 ITT 0.46875 0.835443
33 G3A 0.468468 0.936709
34 0O2 0.46729 0.948052
35 AJQ 0.466102 0.926829
36 GKE 0.463636 0.925
37 GDC 0.463636 0.925
38 GDD 0.463636 0.925
39 Y9Z 0.463636 0.892857
40 GMV 0.460784 0.936709
41 GFB 0.459459 0.949367
42 GDR 0.459459 0.949367
43 DGT 0.456311 0.888889
44 GPD 0.45614 0.914634
45 6CK 0.455357 0.902439
46 G2P 0.451923 0.925
47 AP5 0.447917 0.860759
48 B4P 0.447917 0.860759
49 GKD 0.447368 0.925
50 JB2 0.447368 0.949367
51 8GT 0.445545 0.843373
52 NGD 0.445378 0.949367
53 GPG 0.440367 0.925
54 BA3 0.4375 0.860759
55 GH3 0.433962 0.935897
56 ADP 0.43299 0.884615
57 6YZ 0.432692 0.8625
58 GP2 0.431373 0.925
59 GDX 0.431034 0.936709
60 YGP 0.428571 0.891566
61 MGT 0.428571 0.837209
62 RGT 0.428571 0.875
63 IDP 0.425743 0.935065
64 JB3 0.425 0.9375
65 A4P 0.425 0.83908
66 CAG 0.424 0.894118
67 25L 0.423423 0.873418
68 A2D 0.416667 0.860759
69 7DD 0.414141 0.871795
70 6AD 0.413462 0.855422
71 SAP 0.411765 0.841463
72 AGS 0.411765 0.841463
73 G3D 0.411215 0.948052
74 G2Q 0.409091 0.925
75 ALF 5GP 0.40566 0.879518
76 TPG 0.40458 0.853933
77 ACQ 0.403846 0.8625
78 ANP 0.403846 0.8625
79 G4P 0.40367 0.948052
80 C1Z 0.401786 0.948052
81 2MD 0.4 0.860465
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5T46; Ligand: MGP; Similar sites found with APoc: 100
This union binding pocket(no: 1) in the query (biounit: 5t46.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 4MN7 SME 2.01342
2 3HIW C2X 2.27273
3 2Z8G GLC GLC BGC 2.72727
4 2OBD 2OB 3.18182
5 1GET NAP 3.63636
6 1GET FAD 3.63636
7 3WDM ADN 4.09091
8 4OCT AKG 4.09091
9 4HXY NDP 4.54545
10 1Q1R FAD 4.54545
11 1P1C SAH 4.54545
12 1XCL SAH 4.54545
13 5A04 NDP 5
14 5A04 BGC 5
15 3SAO NKN 5
16 4DRJ RAP 5.10204
17 5VN0 NAI 5.45455
18 2DW7 SRT 5.45455
19 5VN0 FAD 5.45455
20 1QCI ADE 5.45455
21 4NMC FAD 5.90909
22 1N7G NDP 5.90909
23 3COW 52H 5.90909
24 1MO9 KPC 6.06061
25 1MO9 FAD 6.06061
26 5KMS NAD 6.06061
27 2P0D I3P 6.06061
28 5KMS FAD 6.06061
29 3IA4 NDP 6.79012
30 3MMH SME 7.18563
31 4EIL NDP 7.57576
32 2FY3 CHT 7.57576
33 4I2D APC 7.57576
34 4QT2 RAP 8.39695
35 2WPF FAD 9.09091
36 2WPF WPF 9.09091
37 2X3F APC 9.09091
38 5WM2 SAL 9.09091
39 5WM2 AMP 9.09091
40 1J3I NDP 9.09091
41 1FEC FAD 9.09091
42 5JWC FAD 9.09091
43 5G3U ITW 9.09091
44 4DP3 NDP 9.09091
45 1YID ATP 9.09091
46 3EM0 CHD 9.42029
47 2YVJ FAD 10.0917
48 2QUN FUD 10.3448
49 5ESO TDP 10.6061
50 5ESO ISC 10.6061
51 2C6Q NDP 10.6061
52 5NA1 FAD 10.6061
53 1PJS NAD 10.6061
54 5KVA SAM 10.6061
55 3RG9 NDP 10.6061
56 5LUN OGA 10.6061
57 4HK8 XYP XYP XYP XYP XYP XYP 10.6061
58 5ML3 DL3 10.7383
59 3O84 HTJ 12.1212
60 5MGD GLC GAL GAL 12.1212
61 5NEA 8V8 12.1212
62 5U8U FAD 12.1212
63 3C2O NTM 12.1212
64 4LAY I63 12.1212
65 5C3R AKG 12.1212
66 5C3R HMU 12.1212
67 4LAX FK5 12.1212
68 2Q8Z NUP 12.1212
69 3FW9 SLX 12.1212
70 4AZW SAM 12.1212
71 4U03 TLL 13.6364
72 4U03 GTP 13.6364
73 4X7G 3Y8 13.6364
74 1SJD NPG 13.6364
75 3PQB VGP 13.6364
76 1JG9 GLC 15.1515
77 5C1P ADP 15.1515
78 5O9W AKG 16.6667
79 5DNL 5DL 16.6667
80 3HB5 NAP 18.1818
81 5VZ0 2BA 18.1818
82 1NVT NAP 18.1818
83 2W9S NDP 18.1818
84 1MDB AMP DBH 18.1818
85 2CDU FAD 19.697
86 2FV5 541 21.2121
87 6ENO BJ8 21.2121
88 1BOB ACO 21.2121
89 2RAB NAD 22.7273
90 4EMJ FAD 24.2424
91 4EMI NAD 24.2424
92 1F76 FMN 24.2424
93 2F5Z FAD 24.2424
94 4EMI FAD 24.2424
95 3RNM FAD 24.2424
96 3T7S SAM 25.7576
97 5UCD NAP 25.7576
98 1T90 NAD 28.7879
99 5KWY C3S 28.7879
100 2Z3U CRR 36.3636
Pocket No.: 2; Query (leader) PDB : 5T46; Ligand: MGP; Similar sites found with APoc: 17
This union binding pocket(no: 2) in the query (biounit: 5t46.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 2WOX NDP 2.27273
2 5IN4 NAP 3.63636
3 5IN4 GDP 3.63636
4 5IN4 6CK 3.63636
5 1XNK XS2 4.08163
6 3ICR FAD 4.54545
7 4Y7U 2KH 5
8 2TPS TPS 5.45455
9 5X8G S0N 6.06061
10 1JQ9 PHE LEU SER TYR LYS 6.61157
11 6FP4 E1T 9.09091
12 1J3I WRA 9.09091
13 4M52 FAD 10.6061
14 2QE0 NAP 10.6061
15 1YZX GSF 10.6061
16 1YQZ FAD 13.6364
17 1R4W GSH 19.697
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