Receptor
PDB id Resolution Class Description Source Keywords
5VGR 2.1 Å NON-ENZYME: OTHER HUMAN ATLASTIN-3, GDP-BOUND HOMO SAPIENS G PROTEINS GTPASE MEMBRANE FUSION HYDROLASE
Ref.: TIMING AND RESET MECHANISM OF GTP HYDROLYSIS-DRIVEN CONFORMATIONAL CHANGES OF ATLASTIN. STRUCTURE V. 25 997 2017
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP B:501;
A:501;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5VGR 2.1 Å NON-ENZYME: OTHER HUMAN ATLASTIN-3, GDP-BOUND HOMO SAPIENS G PROTEINS GTPASE MEMBRANE FUSION HYDROLASE
Ref.: TIMING AND RESET MECHANISM OF GTP HYDROLYSIS-DRIVEN CONFORMATIONAL CHANGES OF ATLASTIN. STRUCTURE V. 25 997 2017
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4IDN Kd = 5.77 uM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 4IDQ - GDP ALF n/a n/a
4 4IDO - GDP ALF n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 5VGR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 4IDN Kd = 5.77 uM GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 4IDQ - GDP ALF n/a n/a
4 4IDO - GDP ALF n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5VGR; Ligand: GDP; Similar sites found: 452
This union binding pocket(no: 1) in the query (biounit: 5vgr.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1W5T ANP 0.001892 0.43059 0.928074
2 1W5T ADP 0.004606 0.40959 0.928074
3 1VG8 GNP 0.0004313 0.46858 0.966184
4 1VG1 GDP 0.0001609 0.44976 1.08108
5 4IEE AGS 0.0003915 0.48358 1.16009
6 1KK1 GNP 0.00009698 0.44383 1.21951
7 1X6V ADP 0.002296 0.43872 1.39211
8 1TQ4 GDP 0.0007024 0.44958 1.45278
9 1IHU ADP 0.0002733 0.47187 1.62413
10 1IHU AF3 0.0003742 0.46377 1.62413
11 5TSH ANP 0.00005885 0.45642 1.62413
12 1SKQ GDP 0.00004007 0.45542 1.62413
13 5TSH ADP 0.00002263 0.4386 1.62413
14 3NHB ADP 0.00008751 0.42318 1.63399
15 1XP8 AGS 0.04302 0.42034 1.63934
16 5KSZ GCP 0.0002007 0.45422 1.65094
17 2I4I AMP 0.00289 0.41842 1.67866
18 3BFX A3P 0.0003914 0.45859 1.68919
19 2QEN ADP 0.0001517 0.47422 1.71429
20 1F9V ADP 0.00003438 0.44006 1.72911
21 1AZT GSP 0.0002665 0.4815 1.74129
22 3DC4 ADP 0.00002429 0.45285 1.74419
23 2IYL GDP 0.00006569 0.45819 1.76056
24 4TTQ ATP 0.0001323 0.44684 1.86047
25 3COB ADP 0.00001342 0.44098 1.89702
26 3DEF GDP 0.0003832 0.44934 1.9084
27 2RCN GDP 0.00008891 0.45167 1.95531
28 4BAS GNP 0.0005949 0.45483 2.01005
29 1D2E GDP 0.0001721 0.46427 2.01511
30 1D8T GDP 0.00008029 0.45303 2.03562
31 2BVN GNP 0.0003712 0.45071 2.03562
32 1G3M PCQ 0.002804 0.44621 2.04082
33 1G3M A3P 0.002804 0.44621 2.04082
34 1SVM ATP 0.003127 0.45201 2.08817
35 1XKV ATP 0.0005492 0.43708 2.08817
36 1YQT ADP 0.00004659 0.42969 2.08817
37 1QHG ATP 0.002254 0.41792 2.08817
38 2VF7 ADP 0.001292 0.41467 2.08817
39 4YS0 ADP 0.004746 0.40902 2.08817
40 3TK1 GDP 0.00003032 0.44905 2.12121
41 4Q1A UDP 0.0128 0.46117 2.14286
42 4Q1A 2XZ 0.0128 0.46117 2.14286
43 3DZD ADP 0.001647 0.42311 2.17391
44 4R98 GNH 0.00002313 0.47219 2.21402
45 1YZG GDP 0.00005 0.47217 2.23464
46 4QOS ADP 0.0004098 0.46537 2.26415
47 2ZR9 DTP 0.00001156 0.48509 2.29226
48 2DPY ADP 0.00006863 0.5283 2.32019
49 2FAH GDP 0.00008214 0.47867 2.32019
50 4DCT GDP 0.00007656 0.463 2.32019
51 1MKY GDP 0.00004237 0.46213 2.32019
52 1X8J A3P 0.002522 0.45057 2.32019
53 1G6H ADP 0.0000193 0.41994 2.33463
54 5MZN ADP 0.00105 0.40167 2.4032
55 2J5V PCA 0.01661 0.42045 2.45232
56 4HSE ADP 0.0002454 0.44152 2.51889
57 2PL3 ADP 0.0002198 0.43663 2.54237
58 4AG5 ADP 0.00002834 0.55378 2.55102
59 4H1V GNP 0.002448 0.42157 2.5522
60 5H56 ADP 0.0006854 0.4643 2.5641
61 5H56 TYD 0.0006854 0.4643 2.5641
62 1QF9 ALF 0.006725 0.42603 2.57732
63 1QF9 ADP 0.006725 0.42603 2.57732
64 1QF9 C5P 0.006725 0.42603 2.57732
65 2WIC GNP 0.00006696 0.46514 2.62172
66 5UQW GDP 0.000289 0.47275 2.6455
67 5KUT GDP 0.00007957 0.46008 2.6455
68 3P4X ADP 0.0001915 0.43464 2.66344
69 2B8T THM 0.00817 0.40426 2.69058
70 1FP6 ADP 0.000258 0.45688 2.76817
71 3FYH ADP 0.0005207 0.46128 2.79503
72 1X1R GDP 0.0008598 0.45499 2.80899
73 1GOJ ADP 0.000006171 0.43732 2.8169
74 4BFW ZVW 0.001762 0.45689 2.83019
75 4U00 ADP 0.00002149 0.41905 2.86885
76 3BOS CDP 0.00002561 0.47576 2.89256
77 2RGX AP5 0.003564 0.44445 2.91262
78 1D2N ANP 0.001104 0.44092 2.94118
79 3BFV ADP 0.0002007 0.44016 2.95203
80 3RAB GNP 0.0002258 0.47947 2.95858
81 1U8Z GDP 0.000973 0.44726 2.97619
82 2QG6 NMN 0.000325 0.47588 3.01508
83 4R43 GDP 0.0001398 0.49887 3.01624
84 2IS6 ADP 0.00001844 0.47547 3.01624
85 4DSU GDP 0.0003228 0.47427 3.01624
86 5XCO GDP 0.0001033 0.47385 3.01624
87 2ZPA ADP 0.0002603 0.46636 3.01624
88 1NST A3P 0.0007526 0.44391 3.01624
89 4P32 ADP 0.003053 0.42328 3.01624
90 3B7G ANP 0.00009987 0.46073 3.04348
91 2A5F GTP 0.0004758 0.46304 3.10881
92 3KJI ADP 0.01717 0.40885 3.14961
93 5BQ5 ADP BEF 0.0003642 0.46771 3.1746
94 3QKT ANP 0.000883 0.45099 3.24484
95 5GJC ATP 0.000216 0.43997 3.24826
96 4A4Z ANP 0.0002878 0.43737 3.24826
97 1OS1 ATP 0.003007 0.43336 3.24826
98 1OS1 PYR 0.003231 0.43336 3.24826
99 1MR3 G3D 0.00006493 0.46707 3.31492
100 1E2K TMC 0.002485 0.4498 3.32326
101 1RJ9 GCP 0.001605 0.46205 3.33333
102 3FVQ ATP 0.001837 0.43115 3.34262
103 2C04 GCP 0.003893 0.41278 3.367
104 4FRZ ADP 0.00002792 0.44147 3.36788
105 3ZQ6 ADP ALF 0.0002498 0.47932 3.39506
106 2GDJ ANP 0.0001973 0.44517 3.40909
107 4OI4 ATP 0.000238 0.47455 3.47826
108 4NCN GTP 0.0008037 0.45096 3.48028
109 1VKJ A3P 0.00581 0.40905 3.50877
110 1ZC3 GNP 0.0004275 0.46875 3.53982
111 2HCJ GDP 0.00004214 0.45506 3.58209
112 3BER AMP 0.001607 0.40856 3.61446
113 1S9D GDP 0.0001484 0.49139 3.65854
114 4CVN ADP 0.00005928 0.43686 3.66492
115 2AWN ADP 0.000006377 0.4186 3.67454
116 2GWH A3P 0.000666 0.44622 3.69128
117 1YTM ATP 0.0002787 0.44617 3.7123
118 2WJG GDP 0.00001725 0.47639 3.7234
119 2A9K GDP 0.0007873 0.44305 3.74332
120 1YZN GNP 0.0005773 0.46283 3.78378
121 2Q2Y ADP 0.002623 0.44868 3.81471
122 2Q2Y MKR 0.002595 0.4478 3.81471
123 3A4M ADP 0.00004207 0.44432 3.84615
124 4D81 ADP 0.0002915 0.45497 3.88693
125 1PUJ GNP 0.0002507 0.45748 3.90071
126 1NJF AGS 0.00005055 0.50235 3.94432
127 1NJF ADP 0.00009206 0.48616 3.94432
128 4PJ3 ANP 0.001019 0.43245 3.94432
129 5LB3 ADP 0.0005601 0.41757 3.94432
130 5TIV A3P 0.004648 0.43992 3.95257
131 2WOJ ADP ALF 0.0002195 0.48187 3.9548
132 3ZS9 ADP ALF 0.0003046 0.47542 3.9548
133 1S8F GDP 0.02922 0.41196 3.9548
134 1SVK ALF GDP 0.000208 0.48808 3.96601
135 1OXV ANP 0.0001576 0.43359 3.96601
136 4BQS ADP 0.004766 0.43192 3.97727
137 4BQS K2Q 0.004766 0.43192 3.97727
138 2VVG ADP 0.00000675 0.43564 4
139 5N69 ADP 0.0004885 0.4454 4.0201
140 3VX3 ADP 0.000452 0.45585 4.03226
141 1UPT GTP 0.0006327 0.45364 4.09357
142 5X40 ACP 0.0006135 0.4562 4.10959
143 5CK5 GDP 0.00003237 0.4586 4.11392
144 1R2Q GNP 0.0004854 0.47703 4.11765
145 3REF GDP 0.0005253 0.45723 4.12371
146 4HA6 FAD 0.0248 0.40663 4.13386
147 1NY5 ADP 0.001682 0.42868 4.13437
148 3Q85 GNP 0.00005651 0.45788 4.14201
149 3MJH GTP 0.0003259 0.47229 4.16667
150 1Y3A GDP 0.0002697 0.47213 4.25532
151 1M7G ADP 0.0009952 0.45533 4.2654
152 1M7G ADX 0.001525 0.44979 4.2654
153 1M7G AV2 0.0001404 0.43825 4.2654
154 3ZFD ANP 0.0002786 0.44873 4.2735
155 2BEK ATP 0.003674 0.43953 4.28016
156 2BME GNP 0.0002885 0.47467 4.30108
157 1MH1 GNP 0.001029 0.45146 4.30108
158 2OM2 GDP 0.0002854 0.4466 4.30769
159 1WF3 GNP 0.0004066 0.46973 4.31894
160 2OFW ADX 0.003929 0.43927 4.32692
161 1G4U GDP 0.0006134 0.45003 4.34783
162 1GWN GTP 0.0008612 0.44568 4.39024
163 5HR5 ADP 0.00002461 0.50865 4.40835
164 1T8U A3P 0.003049 0.42143 4.41176
165 1BH2 GSP 0.0002319 0.48426 4.44444
166 3AB3 GDP 0.0002417 0.47003 4.47154
167 2FJU GSP 0.0007385 0.44863 4.49438
168 1XTQ GDP 0.0001912 0.4788 4.51977
169 4YMU ATP 0.000206 0.42827 4.58333
170 1S3G AP5 0.002144 0.45284 4.60829
171 4MKF AP5 0.002538 0.45044 4.60829
172 4NON GDP 0.0003093 0.47686 4.61538
173 5BYK OAQ 0.004706 0.43555 4.6332
174 5BYK A3P 0.004706 0.43555 4.6332
175 1Z6T ADP 0.0004039 0.45569 4.64037
176 5FG3 GDP 0.00006708 0.44902 4.64037
177 3EC1 GDP 0.0001948 0.4476 4.64037
178 4DID GDP 0.0002041 0.44457 4.66321
179 1L2T ATP 0.00237 0.43174 4.68085
180 2CJW GDP 0.0000859 0.45157 4.6875
181 1Z08 GNP 0.0007172 0.45317 4.70588
182 1A4R GNH 0.0005265 0.45067 4.71204
183 1A4R GDP 0.0007237 0.44688 4.71204
184 5M04 GDP 0.00005599 0.45108 4.72222
185 5KSP GDP 0.0002657 0.44099 4.73684
186 1KAO GDP 0.0006639 0.44628 4.79042
187 1O3Y GTP 0.000423 0.46341 4.81928
188 4M9Q GNP 0.0005232 0.4573 4.84582
189 2BCG GDP 0.0002419 0.46776 4.85437
190 1JJV ATP 0.00008775 0.42661 4.85437
191 2W2X GSP 0.0006452 0.45121 4.86486
192 1SQ5 ADP 0.0001091 0.45623 4.87239
193 1NHX FTB 0.002815 0.45136 4.87239
194 1NHX PEP 0.003206 0.44766 4.87239
195 2GMV UN8 0.00164 0.44388 4.87239
196 2GMV PEP 0.002247 0.44061 4.87239
197 1M7B GTP 0.0004957 0.45627 4.8913
198 2ZEJ GDP 0.001009 0.45184 4.8913
199 5L3W GDP 0.0004211 0.44233 4.90196
200 1FZQ GDP 0.00001847 0.47946 4.97238
201 2GCN GDP 0.0008939 0.44697 4.97512
202 2GCO GNP 0.0007847 0.44312 4.97512
203 5WRI A3P 0.001408 0.43822 5
204 1JJ7 ADP 0.0000222 0.41776 5
205 4HI0 GDP 0.0005063 0.45586 5.02513
206 2Z5F A3P 0.0004552 0.4579 5.03356
207 1LVG ADP 0.00001764 0.45896 5.05051
208 1ZIN AP5 0.001767 0.45683 5.06912
209 4MKG AP5 0.003136 0.445 5.06912
210 2ORV 4TA 0.007823 0.40998 5.12821
211 2HT6 GDP 0.00004529 0.45269 5.17241
212 4B47 GDP 0.00004588 0.45396 5.23416
213 5WRJ A3P 0.001661 0.43867 5.28053
214 2JJK R15 0.01703 0.41457 5.32544
215 1G7S GDP 0.0002413 0.48152 5.33643
216 3SBD GNP 0.0005999 0.46034 5.34759
217 1DAK ADP 0.03054 0.42487 5.35714
218 1DAK DPU 0.03054 0.42487 5.35714
219 1V8K ANP 0.00006963 0.46007 5.36585
220 2QTV GNP 0.00054 0.46057 5.38922
221 4D0N GDP 0.000103 0.44786 5.40541
222 5HPY GDP 0.0007657 0.44358 5.40541
223 3FWY ADP 0.0001088 0.48052 5.41401
224 2ZPT A3P 0.001919 0.46759 5.42373
225 1KMQ GNP 0.001034 0.44607 5.43478
226 1T5C ADP 0.000003624 0.44255 5.44413
227 2ZFI ADP 0.0001036 0.45191 5.46448
228 2JLR ANP 0.001386 0.4261 5.56845
229 2XAU ADP 0.002185 0.41111 5.56845
230 1VHT BA3 0.002515 0.41012 5.56845
231 2WHX ADP 0.0002589 0.40809 5.56845
232 5MEX SZZ 0.002478 0.4476 5.59006
233 5MEX PAP 0.0009248 0.44221 5.59006
234 4X8O AP5 0.001573 0.46452 5.60748
235 1TX4 ALF GDP 0.001577 0.40305 5.64972
236 4KFU ACP 0.000008486 0.45966 5.66038
237 1P72 ADP 0.001906 0.44668 5.68862
238 3DKP ADP 0.00005919 0.46445 5.71429
239 5HCN GCP 0.0002891 0.44118 5.74713
240 1CS4 GSP 0.0002172 0.41134 5.77778
241 3E70 GDP 0.0002375 0.44541 5.79268
242 1Z0K GTP 0.0005264 0.45917 5.7971
243 1R6B ADP 0.0001702 0.44978 5.80046
244 1EK0 GNP 0.0002677 0.47614 5.88235
245 1ZJ6 G3D 0.00006468 0.46824 5.88235
246 4V0K GDP 0.0002999 0.47203 5.91716
247 3H4S ADP 0.00001206 0.4401 5.92593
248 1HE1 GDP 0.0006542 0.43113 5.92593
249 1HE1 AF3 0.02238 0.40485 5.92593
250 2ZE7 DST 0.002601 0.4332 5.92885
251 2ZE7 AMP 0.002473 0.43258 5.92885
252 2XTZ GSP 0.0006266 0.45948 5.9322
253 2XTN GTP 0.0002099 0.47699 5.98291
254 4NU0 AP5 0.002287 0.44925 5.99078
255 4ITR GDP 0.0007635 0.44586 6.01266
256 3A1S GDP 0.00003303 0.47524 6.03248
257 2FSH ANP 0.001337 0.4047 6.03248
258 4GOX A3P 0.0002548 0.47323 6.07029
259 1YRB GDP 0.0003529 0.45122 6.10687
260 4FCW ADP 0.0005694 0.4311 6.10932
261 1W4R TTP 0.001698 0.44318 6.15385
262 1JI0 ATP 0.00008268 0.52422 6.25
263 5EP2 AZU 0.005652 0.40958 6.25
264 4PFO ADP 0.000189 0.48296 6.2645
265 2GJ8 ALF GDP 0.000489 0.4661 6.39535
266 3FB4 AP5 0.003698 0.4416 6.48148
267 3UIE ANP 0.0004768 0.43883 6.5
268 4GBM A3P 0.001322 0.44131 6.50155
269 1Z2A GDP 0.0003387 0.42706 6.54762
270 2G77 GDP 0.0002543 0.46444 6.56566
271 4HDO GNP 0.0009055 0.45397 6.58683
272 2J0V GDP 0.0001919 0.44551 6.60377
273 2HF9 GSP 0.001551 0.44173 6.63717
274 3WXM GTP 0.000576 0.46113 6.64894
275 1DS6 GDP 0.0001645 0.44056 6.66667
276 4LC1 GDP 0.00004486 0.46304 6.72854
277 1UJ2 C5P 0.03371 0.40753 6.74603
278 3GJ0 GDP 0.0001547 0.49677 6.78733
279 3GJ4 GDP 0.0001493 0.44326 6.78733
280 3GJ5 GDP 0.0002588 0.44183 6.78733
281 3GJ3 GDP 0.0001824 0.43994 6.78733
282 2W58 ADP 0.000001242 0.45134 6.93069
283 1IBR GNP 0.000878 0.45458 6.94444
284 5BXQ GDP 0.000279 0.44058 6.94444
285 1NRJ GTP 0.0003066 0.46548 6.96203
286 3B5J 12D 0.0003619 0.41373 6.99588
287 1Q20 PLO 0.003051 0.43852 7.02341
288 1Q20 A3P 0.003051 0.43852 7.02341
289 2F9L GDP 0.0003464 0.46728 7.03518
290 1YZQ GNP 0.000165 0.48748 7.05882
291 4JD3 PLM 0.01916 0.41209 7.08215
292 4JD3 COA 0.03059 0.4005 7.08215
293 1ZUI SKM 0.001096 0.46184 7.14286
294 3GJ7 GDP 0.0001589 0.44198 7.14286
295 1G3Q ADP 0.0003978 0.43501 7.173
296 1SVI GDP 0.00003121 0.45887 7.17949
297 3PQC GDP 0.0002433 0.44998 7.17949
298 4ZG4 VO4 ADP 0.0003476 0.46721 7.19258
299 3T5G GDP 0.0001468 0.45919 7.23684
300 2PEZ DAT 0.002874 0.43843 7.26257
301 2PEZ GGZ 0.002874 0.43843 7.26257
302 4ZNL BEF ADP 0.0000593 0.46695 7.29927
303 1OIX GDP 0.0002294 0.47916 7.32984
304 1OIV GDP 0.0003386 0.47154 7.32984
305 5TB5 GDP 0.0001619 0.45747 7.33333
306 2VB6 ADP BEF 0.0004629 0.46166 7.38255
307 1UKZ ADP 0.004505 0.43064 7.38916
308 5TAR GDP 0.0002691 0.46841 7.43243
309 4LPS GDP 0.0007581 0.42431 7.43802
310 5IRC GDP 0.002306 0.41044 7.46269
311 2FH5 GTP 0.0004871 0.4566 7.47664
312 3RWO GDP 0.0003516 0.4708 7.56757
313 1TU3 GNP 0.0001582 0.48643 7.59494
314 1G16 GDP 0.0004399 0.46065 7.64706
315 5UWU GNP 0.0006448 0.46066 7.69231
316 1YVD GNP 0.0006156 0.45983 7.69231
317 5UWI GNP 0.0006786 0.45965 7.69231
318 5UWH GNP 0.0006854 0.45946 7.69231
319 5UWT GNP 0.0006894 0.45934 7.69231
320 5DIF GNP 0.0006947 0.45919 7.69231
321 5DHF GNP 0.0006997 0.45905 7.69231
322 5UWP GNP 0.0007834 0.45848 7.69231
323 5UWR GNP 0.0007436 0.45785 7.69231
324 5UWO GNP 0.0007754 0.45703 7.69231
325 5UWW GNP 0.0007899 0.45666 7.69231
326 5UWS GNP 0.0008689 0.45644 7.69231
327 1AQU A3P 0.001406 0.43207 7.74411
328 2WJH FLC 0.00003577 0.48446 7.83133
329 2WJH GDP 0.00002707 0.4803 7.83133
330 2WKQ GTP 0.0006849 0.45406 7.83133
331 4U5X GNP 0.0006963 0.44762 7.86517
332 4PX9 ADP 0.0001542 0.43626 7.87671
333 2BIF ANP 0.00007491 0.51334 7.88863
334 2BIF SIN 0.0001361 0.51334 7.88863
335 4WZA ACP 0.001474 0.47727 7.88863
336 4WZA ADP 0.001474 0.47727 7.88863
337 3IUY AMP 0.001026 0.41854 7.89474
338 4RD0 GDP 0.0004948 0.45838 7.95181
339 5L3S GNP 0.0003763 0.46761 8.12065
340 5L3V GDP 0.0001212 0.46301 8.12065
341 1DAR GDP 0.0001765 0.44208 8.12065
342 1Z83 AP5 0.005652 0.42605 8.16327
343 5UFQ GNP 0.0002296 0.47914 8.19672
344 1U0J ADP 0.0001458 0.43559 8.2397
345 4XTR ATP 0.0002494 0.47365 8.29493
346 4XVU ATP 0.0002682 0.47224 8.29493
347 4XTR ADP 0.0004125 0.45759 8.29493
348 1B7T ADP 0.0003398 0.44538 8.33333
349 2C78 GNP 0.0006389 0.45345 8.35267
350 2D7C GTP 0.0002438 0.47797 8.38323
351 1M2O GNP 0.0005331 0.46265 8.42105
352 2XT3 ADP 0.00001293 0.43997 8.43023
353 1GP2 GDP 0.000117 0.44485 8.4507
354 3BC1 GNP 0.0002928 0.47438 8.47458
355 1Z0J GTP 0.00043 0.46863 8.47458
356 1WA5 GTP 0.000696 0.46549 8.52273
357 1JWY GDP 0.0002725 0.45619 8.58469
358 1JWY ADP 0.0002196 0.44552 8.58469
359 2C9O ADP 0.02182 0.42444 8.58469
360 1F6B GDP 0.0000372 0.47806 8.58586
361 2C77 GNP 0.0005207 0.45532 8.64198
362 1OW3 GDP 0.0009329 0.43984 8.67769
363 2QZ4 ADP 0.0002248 0.45217 8.77863
364 3W5J GDP 0.000001037 0.47234 8.82353
365 1RYH GNP 0.0002907 0.44686 8.86699
366 1H65 GDP 0.0006494 0.45313 8.88889
367 3IIJ ADP 0.00009344 0.45154 8.88889
368 2A5J GDP 0.0001476 0.48561 8.90052
369 2NGR GDP 0.0002127 0.44479 8.97436
370 3Q72 GNP 0.00002751 0.46079 9.03614
371 1R4A GNP 0.0005212 0.46126 9.09091
372 1KO8 6PG 0.0003192 0.46248 9.14286
373 1BG2 ADP 0.000003647 0.44267 9.23077
374 1D5C GDP 0.0003555 0.4581 9.25926
375 1FNN ADP 0.0002212 0.46946 9.28074
376 5L3R GCP 0.0001081 0.49191 9.30233
377 4KBF AMP 0.0002449 0.43376 9.31507
378 1KY3 GDP 0.0002589 0.45671 9.34066
379 4C4P GNP 0.0002633 0.47828 9.34579
380 1KK8 BEF ADP 0.0004731 0.4527 9.35252
381 3H86 AP5 0.004861 0.43033 9.375
382 1F2U ATP 0.001451 0.44469 9.45946
383 1Z0F GDP 0.0001286 0.45316 9.49721
384 1VG0 GDP 0.0003038 0.45384 9.51276
385 1VG9 GDP 0.0001678 0.44953 9.51276
386 1TAD GDP 0.0001947 0.48773 9.5679
387 1TAD ALF 0.0001947 0.48773 9.5679
388 1IN4 ADP 0.0002689 0.46574 9.58084
389 3MGB PAP 0.001371 0.43676 9.71787
390 4WOP CTP 0.0008243 0.44652 9.77778
391 4WZ6 ATP 0.0001444 0.41714 10
392 1NF3 GNP 0.0009161 0.45204 10.1562
393 1FQJ GDP 0.0002442 0.47406 10.2041
394 1FQK GDP 0.0003427 0.46749 10.2041
395 1KSH GDP 0.0004391 0.45859 10.2151
396 1W0J ADP 0.00007775 0.47917 10.2941
397 2CK3 ADP 0.0003012 0.46999 10.2941
398 1W0J ADP BEF 0.0002361 0.46823 10.2941
399 2CK3 ANP 0.0002878 0.46445 10.2941
400 1Z0A GDP 0.0001928 0.45457 10.3448
401 1GRN GDP 0.000715 0.44488 10.3448
402 2C5L GTP 0.0004198 0.46911 10.4046
403 2Y65 ADP 0.000004513 0.45582 10.411
404 3RLF ANP 0.001647 0.43705 10.473
405 4K81 GTP 0.0006804 0.46127 10.5263
406 5I0H ADP BEF 0.0005601 0.45393 10.6729
407 1LFD GNP 0.0004072 0.46792 10.7784
408 3CX8 GSP 0.000296 0.47941 10.8374
409 1NVU GTP 0.0004576 0.46741 10.8434
410 3DDC GNP 0.000507 0.46539 10.8434
411 1NVV GNP 0.000531 0.46448 10.8434
412 1CLU DBG 0.001381 0.46411 10.8434
413 3KUD GDP 0.0003674 0.46201 10.8434
414 1WQ1 GDP 0.0004548 0.462 10.8434
415 4QM7 GTP 0.0003392 0.42979 11.1111
416 3QBT GNP 0.000506 0.40732 11.4943
417 3TMK T5A 0.000423 0.47232 11.5741
418 1RE0 GDP 0.000086 0.44486 11.7647
419 2ODE ALF GDP 0.0002456 0.48312 12.0567
420 2CHG ANP 0.0008315 0.44202 12.065
421 3T12 GDP ALF 0.0008569 0.44779 12.1212
422 3T1O GDP 0.0003154 0.44647 12.1212
423 2IXE ATP 0.002465 0.42741 12.1771
424 3KTA AP5 0.0006011 0.4412 13.2948
425 3M1I GTP 0.0006294 0.46114 13.6126
426 2V7Q ATP 0.00005551 0.47736 13.6364
427 2V7Q ADP 0.0002515 0.43662 13.6364
428 1CXZ GSP 0.0009498 0.44581 13.9535
429 3QF7 ANP 0.0006921 0.44773 14
430 2HV8 GTP 0.0001642 0.48571 14.0625
431 5DI9 GNP 0.0007347 0.45975 14.2857
432 1E96 GTP 0.0007151 0.45689 14.2857
433 1ION ADP 0.0006099 0.43547 14.8148
434 5O2T GSP 0.0003401 0.47325 14.9733
435 2FFQ GSP 0.0003337 0.47362 15.2047
436 3GJ8 GDP 0.0002403 0.443 15.2174
437 1J2J GTP 0.000429 0.42441 15.5556
438 1I4D GDP 0.0001264 0.43644 15.625
439 1ZD9 GDP 0.0003668 0.45983 15.9574
440 1XX6 ADP 0.0003612 0.40174 16.7539
441 4HAT GNP 0.000817 0.45765 18.5714
442 3ZIA ADP 0.00009964 0.47443 19.0476
443 3ZIA ATP 0.00004127 0.47274 19.0476
444 2UZI GTP 0.0004403 0.46639 19.2308
445 2KIN ADP 0.000003649 0.4411 20
446 1Z06 GNP 0.0003813 0.46735 21.164
447 5KDO GDP 0.0002088 0.47283 21.6216
448 1GOT GDP 0.0001981 0.47603 21.9178
449 2QN6 GDP 0.00002444 0.46229 33.3333
450 2D7D ADP 0.000193 0.4421 35
451 2B8W ALF 5GP 0.0000004679 0.59795 37.8049
452 1F5N GNP 0.0000006782 0.59558 39.6752
Pocket No.: 2; Query (leader) PDB : 5VGR; Ligand: GDP; Similar sites found: 4
This union binding pocket(no: 2) in the query (biounit: 5vgr.bio2) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2O0J ADP 0.0003236 0.42202 4.15584
2 1UJ2 ADP 0.01102 0.43172 6.74603
3 4LJ9 ACP 0.002473 0.40055 7.37463
4 1OYY AGS 0.003433 0.40068 10.2088
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