Receptor
PDB id Resolution Class Description Source Keywords
5YLL 1.81 Å EC: 7.-.-.- STRUCTURE OF GH113 BETA-1,4-MANNANASE COMPLEX WITH M6. AMPHIBACILLUS XYLANUS NBRC 15112 COMPLEX HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF GLYCOSIDE HYDROLASE FAMILY 113 BETA-1,4-MANNANASE F AMPHIBACILLUS XYLANUS J. BIOL. CHEM. V. 293 11746 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BMA BMA BMA D:1;
C:1;
Valid;
Valid;
none;
none;
submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5Z4T 1.68 Å EC: 7.-.-.- COMPLEX STRUCTURE - AXMAN113A-M3 AMPHIBACILLUS XYLANUS (STRAIN ATCC 5146626 / JCM 7361 / LMG 17667 / NBRC 15112 / EP01) COMPLEX HYDROLASE
Ref.: STRUCTURAL INSIGHTS INTO THE CATALYTIC MECHANISM OF GLYCOSIDE HYDROLASE FAMILY 113 BETA-1,4-MANNANASE FROMAMPHIBACILLUS XYLANUS J. BIOL. CHEM. V. 293 11746 2018
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 319 families.
1 5YLK - BMA C6 H12 O6 C([C@@H]1[....
2 5YLI - BMA BMA BMA BMA n/a n/a
3 5Z4T - BMA BMA n/a n/a
4 5YLL - BMA BMA BMA n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 271 families.
1 5YLK - BMA C6 H12 O6 C([C@@H]1[....
2 5YLI - BMA BMA BMA BMA n/a n/a
3 5Z4T - BMA BMA n/a n/a
4 5YLL - BMA BMA BMA n/a n/a
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 223 families.
1 5YLK - BMA C6 H12 O6 C([C@@H]1[....
2 5YLI - BMA BMA BMA BMA n/a n/a
3 5Z4T - BMA BMA n/a n/a
4 5YLL - BMA BMA BMA n/a n/a
5 4CD8 Ki = 1.3 mM MVL BMA n/a n/a
6 4CD6 Ki = 0.26 mM IFM BMA n/a n/a
7 4CD7 - IFM BMA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BMA BMA BMA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BMA BMA BMA; Similar ligands found: 15
No: Ligand Similarity coefficient
1 BMA BMA BMA 1.0000
2 MAN BMA BMA 0.9716
3 GCU MAV MAW 0.9466
4 BGC BGC BGC 0.9306
5 BGC OXZ BGC 0.9304
6 BMA BMA BGC 0.9252
7 G2I 0.9233
8 GLC BGC BGC 0.9188
9 GCS GCS GCS 0.9140
10 GTM BGC BGC 0.9006
11 GLC SHD Z6H 0.8986
12 GLC GLC GLC 0.8877
13 LGU MAV BEM 0.8850
14 SGC SGC BGC 0.8818
15 GS1 GLC GS1 0.8764
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5Z4T; Ligand: BMA BMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5z4t.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback