Receptor
PDB id Resolution Class Description Source Keywords
5z1n 1.95 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF C TERMINAL REGION OF G-PROTEIN INTERACT PROTEIN 1 (GIP1) FROM DICTYOSTELIUM DISCOIDEUM DICTYOSTELIUM DISCOIDEUM ALPHA HELIX LIPID BINDING G-PROTEIN BINDING SOCIAL AMOEBACHEMOTAXIS PROTEIN BINDING
Ref.: STRUCTURAL BASIS OF GIP1 FOR CYTOSOLIC SEQUESTRATIO PROTEIN IN WIDE-RANGE CHEMOTAXIS NAT COMMUN V. 9 4635 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NA A:403;
 Part of Protein;
 none;
 submit data
22.99 Na [Na+]
PEF A:401;
 Valid;
 none;
 submit data
691.959 C37 H74 N O8 P CCCCC...
LHG A:402;
 Valid;
 Atoms found LESS than expected: % Diff = 0.898;
 submit data
722.97 C38 H75 O10 P CCCCC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5Z1N 1.95 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF C TERMINAL REGION OF G-PROTEIN INTERACT PROTEIN 1 (GIP1) FROM DICTYOSTELIUM DISCOIDEUM DICTYOSTELIUM DISCOIDEUM ALPHA HELIX LIPID BINDING G-PROTEIN BINDING SOCIAL AMOEBACHEMOTAXIS PROTEIN BINDING
Ref.: STRUCTURAL BASIS OF GIP1 FOR CYTOSOLIC SEQUESTRATIO PROTEIN IN WIDE-RANGE CHEMOTAXIS NAT COMMUN V. 9 4635 2018
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 5Z1N - PEF C37 H74 N O8 P CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 5Z1N - PEF C37 H74 N O8 P CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 5Z1N - PEF C37 H74 N O8 P CCCCCCCCCC....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: PEF; Similar ligands found: 106
No: Ligand ECFP6 Tc MDL keys Tc
1 PEF 1 1
2 3PE 1 1
3 PEV 1 1
4 PTY 1 1
5 8PE 1 1
6 PEH 1 1
7 9PE 0.983051 1
8 6OU 0.865672 0.980769
9 L9Q 0.865672 0.980769
10 LOP 0.865672 0.980769
11 RXY 0.852941 0.980769
12 ZPE 0.814286 0.980769
13 PX4 0.80303 0.793103
14 6PL 0.80303 0.793103
15 HGX 0.80303 0.793103
16 PLD 0.80303 0.793103
17 LIO 0.80303 0.793103
18 PC7 0.80303 0.793103
19 HGP 0.80303 0.793103
20 PEE 0.8 0.980769
21 GP7 0.773333 0.980769
22 PEK 0.77027 0.980769
23 CD4 0.769231 0.823529
24 P5S 0.75 0.90566
25 PGT 0.746269 0.826923
26 XP5 0.746269 0.793103
27 LHG 0.746269 0.826923
28 8SP 0.735294 0.90566
29 6PH 0.714286 0.788462
30 3PH 0.714286 0.788462
31 7PH 0.714286 0.788462
32 F57 0.714286 0.788462
33 LPP 0.714286 0.788462
34 PCW 0.706667 0.779661
35 7P9 0.703125 0.788462
36 PX2 0.703125 0.769231
37 PX8 0.703125 0.769231
38 HXG 0.691176 0.793103
39 PCK 0.688312 0.754098
40 PA8 0.6875 0.769231
41 CN3 0.684932 0.823529
42 LPX 0.671642 0.980392
43 D3D 0.657895 0.811321
44 PGW 0.657895 0.811321
45 PII 0.657534 0.706897
46 CN6 0.657534 0.823529
47 PD7 0.65625 0.788462
48 P50 0.653846 0.90566
49 DR9 0.649351 0.811321
50 PGV 0.649351 0.811321
51 EPH 0.647059 0.980769
52 PSC 0.646341 0.779661
53 PSF 0.642857 0.90566
54 P6L 0.641026 0.811321
55 PGK 0.641026 0.781818
56 44G 0.637681 0.826923
57 8ND 0.636364 0.730769
58 CDL 0.633803 0.75
59 OZ2 0.632911 0.811321
60 D21 0.625 0.773585
61 M7U 0.625 0.788462
62 PIF 0.618421 0.694915
63 DGG 0.617284 0.781818
64 PIZ 0.607595 0.706897
65 PG8 0.60274 0.792453
66 MC3 0.6 0.724138
67 PCF 0.6 0.724138
68 44E 0.6 0.788462
69 PC1 0.6 0.724138
70 PIO 0.594937 0.694915
71 52N 0.594937 0.694915
72 IP9 0.594937 0.706897
73 B7N 0.585366 0.694915
74 PDK 0.577778 0.833333
75 AGA 0.565789 0.792453
76 FAW 0.553846 0.607843
77 DDR 0.553846 0.607843
78 L2C 0.553846 0.607843
79 DGA 0.553846 0.607843
80 1EM 0.553846 0.607843
81 PIE 0.541176 0.65
82 T7X 0.539326 0.694915
83 POV 0.535714 0.711864
84 L9R 0.535714 0.711864
85 LBN 0.535714 0.711864
86 LPC 0.533333 0.827586
87 LP3 0.533333 0.827586
88 LAP 0.533333 0.827586
89 K6G 0.533333 0.827586
90 P3A 0.523256 0.777778
91 NKO 0.492754 0.788462
92 NKN 0.492754 0.788462
93 42H 0.47619 0.813559
94 DLP 0.472527 0.711864
95 CN5 0.468354 0.843137
96 S12 0.447059 0.87037
97 43Y 0.445946 0.758621
98 PC5 0.443038 0.645161
99 NKP 0.435897 0.773585
100 GEL 0.421687 0.942308
101 3PC 0.421687 0.706897
102 PCJ 0.413793 0.672414
103 PGM 0.410256 0.773585
104 DB4 0.407407 0.644068
105 I35 0.407407 0.655172
106 PBU 0.404762 0.644068
Ligand no: 2; Ligand: LHG; Similar ligands found: 121
No: Ligand ECFP6 Tc MDL keys Tc
1 LHG 1 1
2 PGT 1 1
3 CD4 0.870968 0.954545
4 44G 0.868852 1
5 D3D 0.867647 0.977778
6 PGW 0.867647 0.977778
7 PGV 0.855072 0.977778
8 DR9 0.855072 0.977778
9 PGK 0.842857 0.93617
10 P6L 0.842857 0.977778
11 OZ2 0.830986 0.977778
12 DGG 0.808219 0.93617
13 CN3 0.771429 0.954545
14 PEF 0.746269 0.826923
15 8PE 0.746269 0.826923
16 PEV 0.746269 0.826923
17 3PE 0.746269 0.826923
18 PEH 0.746269 0.826923
19 PTY 0.746269 0.826923
20 CN6 0.742857 0.954545
21 P5S 0.73913 0.843137
22 PEE 0.735294 0.811321
23 9PE 0.735294 0.826923
24 8SP 0.724638 0.843137
25 HGX 0.714286 0.701754
26 HGP 0.714286 0.701754
27 PX4 0.714286 0.701754
28 LIO 0.714286 0.701754
29 PC7 0.714286 0.701754
30 PLD 0.714286 0.701754
31 6PL 0.714286 0.701754
32 PG8 0.710145 0.955556
33 3PH 0.703125 0.911111
34 F57 0.703125 0.911111
35 LPP 0.703125 0.911111
36 7PH 0.703125 0.911111
37 6PH 0.703125 0.911111
38 7P9 0.692308 0.911111
39 PX8 0.692308 0.888889
40 PX2 0.692308 0.888889
41 PA8 0.676923 0.888889
42 AGA 0.666667 0.955556
43 XP5 0.661972 0.701754
44 LOP 0.657895 0.811321
45 6OU 0.657895 0.811321
46 L9Q 0.657895 0.811321
47 RXY 0.649351 0.811321
48 PII 0.648649 0.84
49 CDL 0.647887 0.866667
50 PD7 0.646154 0.911111
51 P50 0.64557 0.807692
52 PSF 0.633803 0.843137
53 TGL 0.633333 0.659091
54 PCW 0.632911 0.689655
55 ZPE 0.620253 0.811321
56 PCK 0.617284 0.666667
57 D21 0.616438 0.891304
58 M7U 0.616438 0.911111
59 HXG 0.611111 0.701754
60 PIF 0.61039 0.823529
61 P3A 0.609756 0.934783
62 PIZ 0.6 0.803922
63 GP7 0.595238 0.811321
64 L2C 0.59375 0.704545
65 DDR 0.59375 0.704545
66 1EM 0.59375 0.704545
67 DGA 0.59375 0.704545
68 FAW 0.59375 0.704545
69 44E 0.590909 0.911111
70 PEK 0.590361 0.811321
71 IP9 0.5875 0.803922
72 PIO 0.5875 0.823529
73 52N 0.5875 0.823529
74 PSC 0.581395 0.689655
75 B7N 0.578313 0.823529
76 PC1 0.551282 0.660714
77 MC3 0.551282 0.660714
78 PCF 0.551282 0.660714
79 LPX 0.547945 0.807692
80 1QW 0.539683 0.727273
81 EKG 0.539683 0.727273
82 GYM 0.539683 0.727273
83 PDK 0.537634 0.716667
84 LBR 0.535211 0.652174
85 LP3 0.526316 0.736842
86 K6G 0.526316 0.736842
87 LAP 0.526316 0.736842
88 LPC 0.526316 0.736842
89 PGM 0.520548 0.933333
90 PIE 0.517241 0.769231
91 T7X 0.516484 0.823529
92 NKO 0.507246 0.911111
93 NKN 0.507246 0.911111
94 EPH 0.5 0.811321
95 G2A 0.5 0.666667
96 2JT 0.5 0.666667
97 LBN 0.494253 0.649123
98 L9R 0.494253 0.649123
99 POV 0.494253 0.649123
100 S12 0.493976 0.807692
101 SQD 0.482759 0.640625
102 CN5 0.481013 0.933333
103 OLC 0.472222 0.711111
104 OLB 0.472222 0.711111
105 42H 0.470588 0.724138
106 BQ9 0.469136 0.688889
107 DGD 0.467391 0.618182
108 1O2 0.456522 0.6
109 MVC 0.452055 0.711111
110 3TF 0.451613 0.6
111 NKP 0.448718 0.891304
112 PCJ 0.44186 0.607143
113 78M 0.438356 0.711111
114 78N 0.438356 0.711111
115 DLP 0.43617 0.649123
116 1WV 0.424658 0.711111
117 1L2 0.42 0.6
118 I35 0.402439 0.745098
119 DB4 0.402439 0.764706
120 GGD 0.4 0.607143
121 PBU 0.4 0.764706
Similar Ligands (3D)
Ligand no: 1; Ligand: PEF; Similar ligands found: 0
No: Ligand Similarity coefficient
Ligand no: 2; Ligand: LHG; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5Z1N; Ligand: PEF; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 5z1n.bio1) has 29 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 5Z1N; Ligand: LHG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5z1n.bio1) has 3 residues
No: Leader PDB Ligand Sequence Similarity
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