Receptor
PDB id Resolution Class Description Source Keywords
6EVN 1.48 Å EC: 1.14.11.2 CRYSTAL STRUCTURE OF PEPTIDE-SUBSTRATE-BINDING DOMAIN OF HUM COLLAGEN PROLYL 4-HYDROXYLASE COMPLEX WITH PRO-PRO-GLY-PRO-P RO-PRO-GLY. HOMO SAPIENS TETRATRICOPEPTIDE REPEAT COLLAGEN SYNTHESIS PROLYL 4-HYDROHYDROLASE
Ref.: STRUCTURAL ENZYMOLOGY BINDING STUDIES OF THE PEPTIDE-SUBSTRATE-BINDING DOMAIN OF HUMAN COLLAGEN 4-HYDROXYLASE (TYPE-II): HIGH AFFINITY PEPTIDES HAV SEQUENCE MOTIF. PROTEIN SCI. V. 27 1692 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
SO4 A:302;
A:301;
Invalid;
Invalid;
none;
none;
submit data
96.063 O4 S [O-]S...
DMS A:303;
A:305;
A:306;
A:304;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
78.133 C2 H6 O S CS(=O...
PRO PRO GLY PRO ALA GLY PRO PRO GLY C:1;
Valid;
none;
submit data
745.835 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6EVN 1.48 Å EC: 1.14.11.2 CRYSTAL STRUCTURE OF PEPTIDE-SUBSTRATE-BINDING DOMAIN OF HUM COLLAGEN PROLYL 4-HYDROXYLASE COMPLEX WITH PRO-PRO-GLY-PRO-P RO-PRO-GLY. HOMO SAPIENS TETRATRICOPEPTIDE REPEAT COLLAGEN SYNTHESIS PROLYL 4-HYDROHYDROLASE
Ref.: STRUCTURAL ENZYMOLOGY BINDING STUDIES OF THE PEPTIDE-SUBSTRATE-BINDING DOMAIN OF HUMAN COLLAGEN 4-HYDROXYLASE (TYPE-II): HIGH AFFINITY PEPTIDES HAV SEQUENCE MOTIF. PROTEIN SCI. V. 27 1692 2018
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 6EVM - PRO PRO PRO PRO PRO PRO PRO PRO PRO n/a n/a
2 6EVP - PRO PRO GLY PRO GLU GLY PRO PRO GLY n/a n/a
3 6EVN - PRO PRO GLY PRO ALA GLY PRO PRO GLY n/a n/a
4 6EVO - PRO PRO GLY PRO ARG GLY PRO PRO GLY n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 6EVM - PRO PRO PRO PRO PRO PRO PRO PRO PRO n/a n/a
2 6EVP - PRO PRO GLY PRO GLU GLY PRO PRO GLY n/a n/a
3 6EVN - PRO PRO GLY PRO ALA GLY PRO PRO GLY n/a n/a
4 6EVO - PRO PRO GLY PRO ARG GLY PRO PRO GLY n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 6EVM - PRO PRO PRO PRO PRO PRO PRO PRO PRO n/a n/a
2 6EVP - PRO PRO GLY PRO GLU GLY PRO PRO GLY n/a n/a
3 6EVN - PRO PRO GLY PRO ALA GLY PRO PRO GLY n/a n/a
4 6EVO - PRO PRO GLY PRO ARG GLY PRO PRO GLY n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: PRO PRO GLY PRO ALA GLY PRO PRO GLY; Similar ligands found: 11
No: Ligand ECFP6 Tc MDL keys Tc
1 PRO PRO GLY PRO ALA GLY PRO PRO GLY 1 1
2 PRO PRO GLY PRO PRO GLY PRO PRO GLY 0.77381 0.943396
3 PRO PRO GLY PRO ARG GLY PRO PRO GLY 0.669725 0.864407
4 PRO PRO GLY PRO GLU GLY PRO PRO GLY 0.634615 0.962264
5 PRO PRO PRO MET ALA GLY GLY 0.508621 0.898305
6 PRO GLY PRO LEU PRO ALA 0.46789 0.928571
7 PRO PRO PRO PRO PRO PRO PRO PRO PRO LEU 0.446602 0.857143
8 PRO GLY PRO 0.430108 0.943396
9 PRO PRO PRO VAL PRO PRO TYR SER ALA GLY 0.423423 0.854545
10 PRO PRO PRO PRO PRO PRO LEU PRO PRO 0.421053 0.857143
11 PRO PRO PRO ALA LEU PRO PRO LYS LYS ARG 0.415385 0.875
Similar Ligands (3D)
Ligand no: 1; Ligand: PRO PRO GLY PRO ALA GLY PRO PRO GLY; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6EVN; Ligand: PRO PRO GLY PRO ALA GLY PRO PRO GLY; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6evn.bio1) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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