Receptor
PDB id Resolution Class Description Source Keywords
6I5V 2.01 Å NON-ENZYME: TRANSPORT BLMNBP1 BINDING PROTEIN OF AN ABC TRANSPORTER FROM BIFIDOBAC ANIMALIS SUBSP. LACTIS ATCC27673 IN COMPLEX WITH MANNOTRIOS BIFIDOBACTERIUM ANIMALIS SUBSP. LACTISORGANISM_TAXID: 302911 SOLUTE BINDING PROTEIN MANNOBIOSE BIFIDOBACTERIUM ANIMALISLACTIS ATCC27673 BLAC_00780 PROTEIN TRANSPORT
Ref.: TWO BINDING PROTEINS OF THE ABC TRANSPORTER THAT CO GROWTH OF BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS AT ON BETA-MANNAN POSSESS DISTINCT MANNO-OLIGOSACCHARIDE-BINDING PROFILES. MOL.MICROBIOL. V. 112 114 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ZN A:508;
A:510;
A:507;
A:505;
A:511;
A:512;
A:506;
A:504;
A:509;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Invalid;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
none;
none;
none;
none;
none;
 submit data
65.409 Zn [Zn+2...
BMA BMA BMA B:1;
 Valid;
 none;
 Kd = 0.000000064 M
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6I5V 2.01 Å NON-ENZYME: TRANSPORT BLMNBP1 BINDING PROTEIN OF AN ABC TRANSPORTER FROM BIFIDOBAC ANIMALIS SUBSP. LACTIS ATCC27673 IN COMPLEX WITH MANNOTRIOS BIFIDOBACTERIUM ANIMALIS SUBSP. LACTISORGANISM_TAXID: 302911 SOLUTE BINDING PROTEIN MANNOBIOSE BIFIDOBACTERIUM ANIMALISLACTIS ATCC27673 BLAC_00780 PROTEIN TRANSPORT
Ref.: TWO BINDING PROTEINS OF THE ABC TRANSPORTER THAT CO GROWTH OF BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS AT ON BETA-MANNAN POSSESS DISTINCT MANNO-OLIGOSACCHARIDE-BINDING PROFILES. MOL.MICROBIOL. V. 112 114 2019
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 232 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 197 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
4 6FUV Kd = 0.000000064 M BMA BMA BMA n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 165 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
4 6FUV Kd = 0.000000064 M BMA BMA BMA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BMA BMA BMA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BMA BMA BMA; Similar ligands found: 15
No: Ligand Similarity coefficient
1 BMA BMA BMA 1.0000
2 MAN BMA BMA 0.9716
3 GCU MAV MAW 0.9466
4 BGC BGC BGC 0.9306
5 BGC OXZ BGC 0.9304
6 BMA BMA BGC 0.9252
7 G2I 0.9233
8 GLC BGC BGC 0.9188
9 GCS GCS GCS 0.9140
10 GTM BGC BGC 0.9006
11 GLC SHD Z6H 0.8986
12 GLC GLC GLC 0.8877
13 LGU MAV BEM 0.8850
14 SGC SGC BGC 0.8818
15 GS1 GLC GS1 0.8764
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6I5V; Ligand: BMA BMA BMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6i5v.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
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