Receptor
PDB id Resolution Class Description Source Keywords
6I5W 1.9 Å NON-ENZYME: TRANSPORT BLMNBP1 BINDING PROTEIN OF AN ABC TRANSPORTER FROM BIFIDOBAC ANIMALIS SUBSP. LACTIS ATCC27673 IN COMPLEX WITH MANNOBIOSE BIFIDOBACTERIUM SOLUTE BINDING PROTEIN MANNOPENTAOSE BIFIDOBACTERIUM ANIMASUBSP. LACTIS ATCC27673 BLAC_00780 PROTEIN TRANSPORT
Ref.: TWO BINDING PROTEINS OF THE ABC TRANSPORTER THAT CO GROWTH OF BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS AT ON BETA-MANNAN POSSESS DISTINCT MANNO-OLIGOSACCHARIDE-BINDING PROFILES. MOL.MICROBIOL. V. 112 114 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ZN A:719;
A:729;
A:720;
A:718;
A:727;
A:728;
A:713;
A:723;
A:716;
A:714;
A:724;
A:722;
A:721;
A:717;
A:726;
A:715;
A:725;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Invalid;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
 submit data
65.409 Zn [Zn+2...
ACT A:704;
A:701;
A:706;
A:703;
A:707;
A:702;
A:705;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
none;
none;
 submit data
59.044 C2 H3 O2 CC(=O...
BMA BMA BMA BMA BMA B:1;
 Valid;
 none;
 Kd = 0.000000064 M
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6I5V 2.01 Å NON-ENZYME: TRANSPORT BLMNBP1 BINDING PROTEIN OF AN ABC TRANSPORTER FROM BIFIDOBAC ANIMALIS SUBSP. LACTIS ATCC27673 IN COMPLEX WITH MANNOTRIOS BIFIDOBACTERIUM ANIMALIS SUBSP. LACTISORGANISM_TAXID: 302911 SOLUTE BINDING PROTEIN MANNOBIOSE BIFIDOBACTERIUM ANIMALISLACTIS ATCC27673 BLAC_00780 PROTEIN TRANSPORT
Ref.: TWO BINDING PROTEINS OF THE ABC TRANSPORTER THAT CO GROWTH OF BIFIDOBACTERIUM ANIMALIS SUBSP. LACTIS AT ON BETA-MANNAN POSSESS DISTINCT MANNO-OLIGOSACCHARIDE-BINDING PROFILES. MOL.MICROBIOL. V. 112 114 2019
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 232 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 197 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
4 6FUV Kd = 0.000000064 M BMA BMA BMA n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 165 families.
1 6I5R Kd = 0.000000064 M BMA BMA n/a n/a
2 6I5W Kd = 0.000000064 M BMA BMA BMA BMA BMA n/a n/a
3 6I5V Kd = 0.000000064 M BMA BMA BMA n/a n/a
4 6FUV Kd = 0.000000064 M BMA BMA BMA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: BMA BMA BMA BMA BMA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: BMA BMA BMA BMA BMA; Similar ligands found: 3
No: Ligand Similarity coefficient
1 BMA BMA BMA BMA BMA 1.0000
2 MAN BMA BMA BMA BMA 0.9641
3 BGC BGC BGC BGC BGC 0.8824
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6I5V; Ligand: BMA BMA BMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6i5v.bio1) has 28 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback