Receptor
PDB id Resolution Class Description Source Keywords
6N6D 1.53 Å EC: 3.1.-.- VIBRIO CHOLERAE OLIGORIBONUCLEASE BOUND TO PAG VIBRIO CHOLERAE 3-prime -5-prime EXORIBONUCLEASE RNA BINDING PROTEIN RNA BINDING PROTCOMPLEX
Ref.: A DEDICATED DIRIBONUCLEOTIDASE RESOLVES A KEY BOTTL THE TERMINAL STEP OF RNA DEGRADATION. ELIFE V. 8 2019
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
A G D:603;
 Valid;
 none;
 submit data
n/a n/a
NA D:701;
 Part of Protein;
 none;
 submit data
22.99 Na [Na+]
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6N6A 1.5 Å EC: 3.1.-.- VIBRIO CHOLERAE OLIGORIBONUCLEASE BOUND TO PGG VIBRIO CHOLERAE 3-prime -5-prime EXORIBONUCLEASE RNA BINDING PROTEIN RNA BINDING PROTCOMPLEX
Ref.: A DEDICATED DIRIBONUCLEOTIDASE RESOLVES A KEY BOTTL THE TERMINAL STEP OF RNA DEGRADATION. ELIFE V. 8 2019
Members (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 31 families.
1 6N6E - G A n/a n/a
2 6N6D - A G n/a n/a
3 6N6A - G G n/a n/a
4 6N6G - C G n/a n/a
5 6N6C - A A n/a n/a
6 6N6H - C U n/a n/a
7 6N6F - G C n/a n/a
70% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 25 families.
1 6N6E - G A n/a n/a
2 6N6D - A G n/a n/a
3 6N6A - G G n/a n/a
4 6N6G - C G n/a n/a
5 6N6C - A A n/a n/a
6 6N6H - C U n/a n/a
7 6N6F - G C n/a n/a
8 6A4F - U5P C9 H13 N2 O9 P C1=CN(C(=O....
9 6A4D - 9RC C16 H18 N3 O10 P CC1=CN(C(=....
50% Homology Family (14)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 22 families.
1 6N6E - G A n/a n/a
2 6N6D - A G n/a n/a
3 6N6A - G G n/a n/a
4 6N6G - C G n/a n/a
5 6N6C - A A n/a n/a
6 6N6H - C U n/a n/a
7 6N6F - G C n/a n/a
8 6N6K - A G n/a n/a
9 6N6I - G G n/a n/a
10 6N6J - A A n/a n/a
11 6A4F - U5P C9 H13 N2 O9 P C1=CN(C(=O....
12 6A4D - 9RC C16 H18 N3 O10 P CC1=CN(C(=....
13 6RCL - A A n/a n/a
14 6RCN - DA DA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: A G ; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: A G ; Similar ligands found: 7
No: Ligand Similarity coefficient
1 A G 1.0000
2 G G 0.9840
3 A A 0.9790
4 G A 0.9761
5 C G 0.9359
6 4BW 0.8897
7 C U 0.8672
Similar Binding Sites (Proteins are less than 50% similar to leader) APoc FAQ
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