Receptor
PDB id Resolution Class Description Source Keywords
6YWO 1.9 Å NON-ENZYME: OTHER CUTA IN COMPLEX WITH A3 RNA THERMOTHIELAVIOIDES TERRESTRIS NRRL 81ORGANISM_TAXID: 578455 TERMINAL NUCLEOTIDE TRANSFERASE POLYMERASE RNA-BINDING PROBINDING PROTEIN
Ref.: STRUCTURE AND MECHANISM OF CUTA, RNA NUCLEOTIDYL TR WITH AN UNUSUAL PREFERENCE FOR CYTOSINE. NUCLEIC ACIDS RES. V. 48 9387 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MG B:705;
D:703;
A:702;
C:701;
B:702;
D:704;
C:702;
B:703;
D:701;
B:704;
A:703;
D:702;
 Part of Protein;
Invalid;
Part of Protein;
Part of Protein;
Part of Protein;
Invalid;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
 submit data
24.305 Mg [Mg+2...
CL A:701;
B:701;
 Invalid;
Invalid;
 none;
none;
 submit data
35.453 Cl [Cl-]
A A A E:-2;
K:-2;
I:-2;
F:-2;
 Valid;
Valid;
Valid;
Valid;
 Atoms found LESS than expected: % Diff = 0.06;
Atoms found LESS than expected: % Diff = 0.06;
Atoms found LESS than expected: % Diff = 0.06;
Atoms found LESS than expected: % Diff = 0.06;
 submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6YWN 1.45 Å NON-ENZYME: OTHER CUTA IN COMPLEX WITH CMPCPP THERMOTHIELAVIOIDES TERRESTRIS NRRL 81ORGANISM_TAXID: 578455 TERMINAL NUCLEOTIDE TRANSFERASE POLYMERASE RNA-BINDING PROBINDING PROTEIN
Ref.: STRUCTURE AND MECHANISM OF CUTA, RNA NUCLEOTIDYL TR WITH AN UNUSUAL PREFERENCE FOR CYTOSINE. NUCLEIC ACIDS RES. V. 48 9387 2020
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 6YWO - A A A n/a n/a
2 6YWN - 2TM C10 H18 N3 O13 P3 C1=CN(C(=O....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 6YWO - A A A n/a n/a
2 6YWN - 2TM C10 H18 N3 O13 P3 C1=CN(C(=O....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 6YWO - A A A n/a n/a
2 6YWN - 2TM C10 H18 N3 O13 P3 C1=CN(C(=O....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: A A A ; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: A A A ; Similar ligands found: 1
No: Ligand Similarity coefficient
1 A A A 1.0000
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6YWN; Ligand: 2TM; Similar sites found with APoc: 4
This union binding pocket(no: 1) in the query (biounit: 6ywn.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 4NKT 2KH 38.4164
2 5W0N 2KH 41.5978
3 5W0N 2KH 41.5978
4 5W0N 2KH 41.5978
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