Receptor
PDB id Resolution Class Description Source Keywords
1ODZ 1.4 Å EC: 3.2.1.78 EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUCE DEFINED OLIGOSACCHARIDES CELLVIBRIO JAPONICUS HYDROLASE MANNANASE FAMILY 26 GLYCOSIDE-HYDROLASE GLYCOSMANNO-OLIGOSACCHARIDE
Ref.: EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUC MANNO-OLIGOSACCHARIDES CHEM.COMMUN.(CAMB.) V. 12 1327 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MAN BMA D:1;
C:1;
 Valid;
Valid;
 none;
none;
 submit data
n/a n/a
NA A:1427;
B:1427;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
22.99 Na [Na+]
TRS A:1424;
B:1426;
 Invalid;
Invalid;
 none;
none;
 submit data
122.143 C4 H12 N O3 C(C(C...
ZN A:1423;
B:1423;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1ODZ 1.4 Å EC: 3.2.1.78 EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUCE DEFINED OLIGOSACCHARIDES CELLVIBRIO JAPONICUS HYDROLASE MANNANASE FAMILY 26 GLYCOSIDE-HYDROLASE GLYCOSMANNO-OLIGOSACCHARIDE
Ref.: EXPANSION OF THE GLYCOSYNTHASE REPERTOIRE TO PRODUC MANNO-OLIGOSACCHARIDES CHEM.COMMUN.(CAMB.) V. 12 1327 2003
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 1ODZ - MAN BMA n/a n/a
2 1GVY - MBF NIN BMA BMA n/a n/a
3 1GW1 - NIN MBF BMA BMA n/a n/a
4 2WHM - MAN BMA n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 1ODZ - MAN BMA n/a n/a
2 1GVY - MBF NIN BMA BMA n/a n/a
3 1GW1 - NIN MBF BMA BMA n/a n/a
4 2WHM - MAN BMA n/a n/a
50% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 1ODZ - MAN BMA n/a n/a
2 1GVY - MBF NIN BMA BMA n/a n/a
3 1GW1 - NIN MBF BMA BMA n/a n/a
4 2WHM - MAN BMA n/a n/a
5 2VX7 - BMA BMA n/a n/a
6 2VX6 - BMA BMA BMA BMA GLA n/a n/a
7 2VX5 - BMA C6 H12 O6 C([C@@H]1[....
8 4CD4 Ki = 263 nM BMA IFM n/a n/a
9 4CD5 Ki = 194 nM BMA MVL n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: MAN BMA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: MAN BMA; Similar ligands found: 47
No: Ligand Similarity coefficient
1 MAN BMA 1.0000
2 BMA BMA 0.9876
3 BMA IFM 0.9593
4 IFM BMA 0.9439
5 MAV BEM 0.9388
6 PA1 GCS 0.9386
7 BEM BEM 0.9366
8 BGC BGC 0.9334
9 IFM BGC 0.9300
10 9MR 0.9201
11 GLC BGC 0.9187
12 BGC OXZ 0.9186
13 BEM LGU 0.9185
14 BMA BGC 0.9179
15 GLC GAL 0.9167
16 ABL 0.9153
17 MVL BMA 0.9124
18 BMA MVL 0.9124
19 NOY BGC 0.9110
20 BGC GAL 0.9092
21 SHG BGC 0.9068
22 BGC Z9D 0.9066
23 GLC GLC 0.9057
24 GCS GCS 0.9047
25 LGU MAW 0.8952
26 SGC BGC 0.8928
27 BMA GAL 0.8892
28 6EN 0.8835
29 MYG 0.8808
30 FRU GAL 0.8796
31 MGL SGC 0.8758
32 CJZ 0.8749
33 ISX 0.8720
34 GLO BGC 0.8695
35 XMM 0.8695
36 BQZ 0.8683
37 GLA GLA 0.8653
38 MGL GAL 0.8644
39 7D0 0.8639
40 FUC GAL 0.8629
41 GAL AAL 0.8623
42 MHD GAL 0.8594
43 TWJ SDY 0.8592
44 GMP 0.8578
45 MMA XYP 0.8577
46 GCU BGC 0.8543
47 CZ0 0.8540
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1ODZ; Ligand: MAN BMA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1odz.bio2) has 13 residues
No: Leader PDB Ligand Sequence Similarity
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