Receptor
PDB id Resolution Class Description Source Keywords
3VDQ 2.2 Å EC: 1.1.1.30 CRYSTAL STRUCTURE OF ALCALIGENES FAECALIS D-3-HYDROXYBUTYRAT DEHYDROGENASE IN COMPLEX WITH NAD(+) AND ACETATE ALCALIGENES FAECALIS NAD DEPENDENT ENZYME HYDROXYBUTYRATE DEHYDROGENASE KETONE OXIDOREDUCTASE
Ref.: THE STRUCTURES OF ALCALIGENES FAECALIS D-3-HYDROXYB DEHYDROGENASE BEFORE AND AFTER NAD+ AND ACETATE BIN SUGGEST A DYNAMICAL REACTION MECHANISM AS A MEMBER SDR FAMILY. ACTA CRYSTALLOGR.,SECT.D V. 64 496 2008
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACT A:301;
B:301;
C:302;
D:301;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
59.044 C2 H3 O2 CC(=O...
CA B:304;
C:301;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
CL A:302;
B:302;
C:303;
D:302;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
35.453 Cl [Cl-]
NAD A:303;
B:303;
C:304;
D:303;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
663.425 C21 H27 N7 O14 P2 c1cc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
5B4T 1.19 Å EC: 1.1.1.30 CRYSTAL STRUCTURE OF D-3-HYDROXYBUTYRATE DEHYDROGENASE FROM ALCALIGENES FAECALIS COMPLEXED WITH NAD+ AND A SUBSTRATE D-H YDROXYBUTYRATE ALCALIGENES FAECALIS SHORT-CHAIN DEHYDROGENASES/REDUCTASES SUBSTRATE COMPLEX OXIDOREDUCTASE
Ref.: STRUCTURAL INSIGHTS INTO THE CATALYTIC REACTION TRI INHIBITION OF D-3-HYDROXYBUTYRATE DEHYDROGENASE ACTA CRYSTALLOGR.,SECT.F V. 72 507 2016
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 5B4T - 3HR C4 H8 O3 C[C@H](CC(....
2 3VDQ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 5B4V - DXX C4 H6 O4 CC(C(=O)O)....
4 5B4U - MLA C3 H4 O4 C(C(=O)O)C....
70% Homology Family (12)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 5YSS - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2ZTL - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 2ZTU - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 2ZTM - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 1X1T - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
6 2ZTV - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 2Q2V - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
8 2Q2Q - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
9 5B4T - 3HR C4 H8 O3 C[C@H](CC(....
10 3VDQ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
11 5B4V - DXX C4 H6 O4 CC(C(=O)O)....
12 5B4U - MLA C3 H4 O4 C(C(=O)O)C....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1X7H - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
2 1W4Z - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 2Q2V - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 3VDQ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 2DTE - NAI C21 H29 N7 O14 P2 c1nc(c2c(n....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: NAD; Similar ligands found: 251
No: Ligand ECFP6 Tc MDL keys Tc
1 NAD IBO 0.885714 0.985915
2 NAD TDB 0.885714 0.985915
3 A3D 0.872727 0.986111
4 NHD 0.821429 0.972222
5 NAP 0.811966 0.986111
6 NFD 0.791304 0.946667
7 DND 0.765766 0.972603
8 AMP NAD 0.74359 0.972222
9 ZID 0.737705 0.986111
10 NAQ 0.729508 0.934211
11 NAE 0.721311 0.959459
12 NA0 0.712 0.972603
13 TAP 0.704 0.921053
14 NDE 0.689922 0.972603
15 NAJ 0.683333 0.972222
16 NDC 0.679389 0.934211
17 NDO 0.674603 0.958904
18 N01 0.656 0.972222
19 CNA 0.642276 0.972603
20 NBP 0.621212 0.922078
21 NAD BBN 0.609929 0.876543
22 8ID 0.609756 0.922078
23 NAD CJ3 0.601399 0.845238
24 ADP MG 0.584906 0.957747
25 ADP BEF 0.584906 0.957747
26 A2D 0.576923 0.958333
27 ADP 0.575472 0.931507
28 NGD 0.574803 0.922078
29 BA3 0.566038 0.958333
30 NAD NDT 0.565789 0.755319
31 M33 0.564815 0.918919
32 ADP PO3 0.563636 0.957747
33 ATP MG 0.563636 0.957747
34 AP5 0.560748 0.958333
35 B4P 0.560748 0.958333
36 BEF ADP 0.558559 0.931507
37 VO4 ADP 0.557522 0.932432
38 AT4 0.555556 0.894737
39 AN2 0.555556 0.918919
40 GAP 0.553571 0.932432
41 OOB 0.551724 0.972222
42 CA0 0.550459 0.932432
43 9JJ 0.546053 0.898734
44 ATP 0.545455 0.931507
45 HEJ 0.545455 0.931507
46 ACP 0.545455 0.906667
47 KG4 0.545455 0.932432
48 DQV 0.544 0.972222
49 ALF ADP 0.54386 0.883117
50 ANP MG 0.54386 0.945205
51 DAL AMP 0.543103 0.945205
52 8LQ 0.543103 0.92
53 AQP 0.540541 0.931507
54 APR 0.540541 0.931507
55 AR6 0.540541 0.931507
56 5FA 0.540541 0.931507
57 AGS 0.535714 0.883117
58 AD9 0.535714 0.906667
59 WAQ 0.533333 0.896104
60 ABM 0.53271 0.905405
61 45A 0.53271 0.905405
62 QA7 0.529915 0.907895
63 DLL 0.529412 0.972222
64 00A 0.529412 0.921053
65 AMP MG 0.528302 0.943662
66 ANP 0.526316 0.906667
67 NJP 0.526316 0.959459
68 ACQ 0.526316 0.906667
69 OAD 0.525 0.932432
70 ADX 0.522523 0.839506
71 8LE 0.521739 0.907895
72 5AL 0.521739 0.945205
73 A1R 0.521008 0.871795
74 9SN 0.520325 0.909091
75 A 0.518868 0.930556
76 AMP 0.518868 0.930556
77 50T 0.517857 0.893333
78 ATF 0.517241 0.894737
79 3OD 0.516393 0.932432
80 1ZZ 0.516393 0.851852
81 SON 0.513514 0.92
82 PRX 0.513274 0.881579
83 SRP 0.512821 0.92
84 8LH 0.512821 0.92
85 6YZ 0.512821 0.906667
86 3UK 0.512397 0.958904
87 9X8 0.512397 0.883117
88 ADP BMA 0.512397 0.932432
89 MYR AMP 0.512195 0.851852
90 NAJ PZO 0.510949 0.909091
91 NMN 0.509434 0.875
92 HQG 0.508475 0.918919
93 A3R 0.508333 0.871795
94 B5V 0.508197 0.945946
95 AMP DBH 0.507937 0.906667
96 A22 0.504202 0.945205
97 JNT 0.504132 0.906667
98 FA5 0.504 0.945946
99 ATP A 0.504 0.971831
100 ATP A A A 0.504 0.971831
101 B5M 0.504 0.933333
102 8QN 0.5 0.945205
103 NAX 0.496183 0.886076
104 PR8 0.495935 0.8625
105 ADQ 0.495868 0.932432
106 AMO 0.495868 0.92
107 4AD 0.495868 0.933333
108 PAJ 0.495868 0.873418
109 V2G 0.495726 0.884615
110 APC MG 0.495652 0.931507
111 A12 0.495495 0.894737
112 AP2 0.495495 0.894737
113 ALF ADP 3PG 0.492424 0.873418
114 AHZ 0.492308 0.851852
115 FYA 0.491935 0.918919
116 AHX 0.491803 0.884615
117 4UU 0.488372 0.933333
118 5SV 0.487603 0.8375
119 T99 0.487179 0.894737
120 TAT 0.487179 0.894737
121 APC 0.486957 0.894737
122 SRA 0.486239 0.881579
123 6V0 0.484848 0.909091
124 NAI 0.484848 0.921053
125 GTA 0.484615 0.898734
126 LAD 0.483871 0.873418
127 AU1 0.482456 0.906667
128 F2R 0.481752 0.831325
129 TXE 0.481203 0.921053
130 OMR 0.481203 0.841463
131 AF3 ADP 3PG 0.481203 0.873418
132 LAQ 0.480916 0.851852
133 G3A 0.48062 0.909091
134 B5Y 0.480315 0.933333
135 NB8 0.48 0.884615
136 TXA 0.48 0.92
137 BIS 0.48 0.871795
138 PTJ 0.48 0.884615
139 ME8 0.48 0.851852
140 139 0.477941 0.886076
141 LPA AMP 0.477273 0.851852
142 G5P 0.476923 0.909091
143 AFH 0.476923 0.873418
144 AR6 AR6 0.476923 0.958333
145 ARG AMP 0.476923 0.841463
146 25L 0.47619 0.945205
147 NAJ PYZ 0.475524 0.864198
148 9ZA 0.47541 0.896104
149 9ZD 0.47541 0.896104
150 OZV 0.47541 0.931507
151 25A 0.47541 0.958333
152 DZD 0.47482 0.897436
153 TXD 0.473684 0.921053
154 4UV 0.472868 0.933333
155 TYM 0.470149 0.945946
156 ADV 0.470085 0.894737
157 RBY 0.470085 0.894737
158 A7R 0.469231 0.857143
159 KMQ 0.46875 0.894737
160 4TA 0.467626 0.864198
161 48N 0.466165 0.884615
162 XAH 0.465116 0.851852
163 4UW 0.462687 0.897436
164 M24 0.461538 0.886076
165 80F 0.460993 0.853659
166 IOT 0.459854 0.821429
167 T5A 0.456522 0.853659
168 L3W 0.455882 0.92
169 EAD 0.455782 0.886076
170 MAP 0.455285 0.883117
171 GA7 0.454545 0.894737
172 BT5 0.453901 0.821429
173 A4P 0.452555 0.833333
174 UP5 0.451852 0.933333
175 PAP 0.445378 0.917808
176 AP0 0.445255 0.884615
177 4TC 0.445255 0.909091
178 YLP 0.444444 0.831325
179 P1H 0.443709 0.864198
180 AOC 0.442478 0.810811
181 Z5A 0.439189 0.833333
182 LMS 0.4375 0.817073
183 2A5 0.436975 0.857143
184 COD 0.43662 0.802326
185 ADJ 0.435714 0.841463
186 YLC 0.434783 0.851852
187 YLB 0.434783 0.831325
188 ATR 0.433333 0.90411
189 7MD 0.432836 0.851852
190 8X1 0.432 0.764045
191 G5A 0.429752 0.790698
192 PO4 PO4 A A A A PO4 0.429688 0.943662
193 TAD 0.42963 0.873418
194 D4F 0.428571 0.875
195 5AS 0.42735 0.770115
196 BTX 0.426573 0.831325
197 YLA 0.425532 0.831325
198 DSZ 0.425197 0.790698
199 NCN 0.424779 0.805556
200 UPA 0.42446 0.921053
201 8PZ 0.424242 0.811765
202 VMS 0.424 0.8
203 54H 0.424 0.8
204 9K8 0.423077 0.744444
205 N0B 0.422819 0.853659
206 6AD 0.422764 0.85
207 AYB 0.422535 0.821429
208 7D3 0.422414 0.844156
209 YLY 0.421769 0.821429
210 TSB 0.420635 0.809524
211 ODP 0.41958 0.922078
212 A5A 0.419355 0.819277
213 FB0 0.419355 0.775281
214 AV2 0.419355 0.855263
215 NNR 0.419048 0.739726
216 LEU LMS 0.418605 0.761364
217 649 0.417266 0.775281
218 H1Q 0.416667 0.917808
219 NMN AMP PO4 0.416667 0.933333
220 SSA 0.416 0.790698
221 P5A 0.415385 0.755556
222 LSS 0.414062 0.772727
223 52H 0.412698 0.790698
224 A2R 0.412698 0.918919
225 JB6 0.412214 0.896104
226 5N5 0.411215 0.783784
227 YSA 0.410448 0.811765
228 B1U 0.410448 0.786517
229 53H 0.409449 0.790698
230 5CA 0.409449 0.790698
231 ITT 0.408333 0.878378
232 7D4 0.408333 0.844156
233 NA7 0.407692 0.894737
234 5CD 0.407407 0.794521
235 0WD 0.406897 0.909091
236 A3P 0.40678 0.930556
237 HFD 0.406504 0.883117
238 JSQ 0.406504 0.883117
239 AVV 0.40625 0.860759
240 RAB 0.40566 0.808219
241 XYA 0.40566 0.808219
242 ADN 0.40566 0.808219
243 FDA 0.405063 0.823529
244 CUU 0.404959 0.905405
245 V47 0.404762 0.821918
246 GSU 0.40458 0.790698
247 7MC 0.404255 0.831325
248 NSS 0.403101 0.811765
249 6FA 0.402516 0.853659
250 PPS 0.4 0.817073
251 NVA LMS 0.4 0.784091
Similar Ligands (3D)
Ligand no: 1; Ligand: NAD; Similar ligands found: 4
No: Ligand Similarity coefficient
1 NAD 1.0000
2 NDP 0.9403
3 TXP 0.8813
4 NZQ 0.8708
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 5B4T; Ligand: 3HR; Similar sites found with APoc: 210
This union binding pocket(no: 1) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
1 1XSE NDP 31.5385
2 5GT9 NAP 32.6923
3 3P19 NDP 33.0769
4 3P19 NDP 33.0769
5 3P19 NDP 33.0769
6 3P19 NDP 33.0769
7 3P19 NDP 33.0769
8 3P19 NDP 33.0769
9 4YAG NAI 35
10 1E3W NAD 35.7692
11 1E6W NAD 35.7692
12 1E3W NAD 35.7692
13 1E3W NAD 35.7692
14 1E6W NAD 35.7692
15 1E6W NAD 35.7692
16 1E6W NAD 35.7692
17 1E6W EST 35.7692
18 1E3W NAD 35.7692
19 3WXB NDP 35.7692
20 3WXB NDP 35.7692
21 5O98 NAP 36.1538
22 5O98 NAP 36.1538
23 1W8D NAP 36.4238
24 1W73 NAP 36.4238
25 1W8D NAP 36.4238
26 1W8D NAP 36.4238
27 1W73 NAP 36.4238
28 1W73 NAP 36.4238
29 1W73 NAP 36.4238
30 1W8D NAP 36.4238
31 5L53 NAP 36.5385
32 2BD0 NAP 37.2951
33 2BD0 NAP 37.2951
34 2BD0 NAP 37.2951
35 2BD0 NAP 37.2951
36 3TN7 NJP 37.3541
37 3TN7 NJP 37.3541
38 1W6U NAP 37.4172
39 1W6U NAP 37.4172
40 1W6U NAP 37.4172
41 1W6U NAP 37.4172
42 3RKR NAP 37.6923
43 4K26 NDP 38.4615
44 2GDZ NAD 38.8462
45 1ZBQ NAD 38.8462
46 1XG5 NAP 39.6154
47 1XG5 NAP 39.6154
48 1XG5 NAP 39.6154
49 1XG5 NAP 39.6154
50 1N5D NDP 40
51 1U7T TDT 43.0769
52 1U7T TDT 43.0769
53 2JAH NDP 44.1296
54 2JAH NDP 44.1296
55 2JAH NDP 44.1296
56 2JAH NDP 44.1296
57 5O42 9JW 44.1606
58 5O42 BGC 44.1606
59 5O42 NAD 44.1606
60 1G0N NDP 44.6154
61 1G0N NDP 44.6154
62 1G0N PHH 44.6154
63 2JAP NDP 44.9393
64 2JAP NDP 44.9393
65 2JAP NDP 44.9393
66 2JAP NDP 44.9393
67 3QWI NAP 45
68 3QWI NAP 45
69 3QWI CUE 45
70 3QWI NAP 45
71 3QWI CUE 45
72 3QWI NAP 45
73 2DKN NAI 45.098
74 4KWI 1TJ 45.3846
75 4KWI NAP 45.3846
76 4KWI 1TJ 45.3846
77 4KWI NAP 45.3846
78 6TBX NAP 45.3846
79 5K6A NAP 45.3846
80 6HOW NAP 45.3846
81 5GWT NAD 45.7692
82 5GWT SIN 45.7692
83 5GWT NAD 45.7692
84 5GWT SIN 45.7692
85 5GWT SIN 45.7692
86 5GWT SIN 45.7692
87 5GWT NAD 45.7692
88 5GWT NAD 45.7692
89 1AE1 NAP 46.1538
90 1AE1 NAP 46.1538
91 1AE1 NAP 46.1538
92 1AE1 NAP 46.1538
93 3AI3 NDP 46.5385
94 3AI3 NDP 46.5385
95 3AI3 NDP 46.5385
96 3AI3 NDP 46.5385
97 5OJI NAP 46.5385
98 3AI3 SOL 46.5385
99 3AI3 SOL 46.5385
100 5OJI ISN 46.5385
101 5OJI ISN 46.5385
102 5OJI NAP 46.5385
103 3AI3 SOL 46.5385
104 3AI3 SOL 46.5385
105 6J7U NDP 46.7433
106 4O0L NDP 46.9231
107 4O0L NDP 46.9231
108 4O0L NDP 46.9231
109 4O0L NDP 46.9231
110 6OW4 NAD 46.9231
111 6OW4 NAD 46.9231
112 6OW4 NAD 46.9231
113 6OW4 NAD 46.9231
114 6OW4 NAD 46.9231
115 6OW4 NAD 46.9231
116 6OW4 NAD 46.9231
117 6TQ5 NAP 47.1545
118 6TQ5 NAP 47.1545
119 6TQ5 NAP 47.1545
120 6TQ5 NAP 47.1545
121 3OID NDP 47.2868
122 3OID NDP 47.2868
123 3OID NDP 47.2868
124 3OID NDP 47.2868
125 3VZS NAP 47.4708
126 2AE2 PTO 47.6923
127 2AE2 NAP 47.6923
128 2AE2 PTO 47.6923
129 2AE2 NAP 47.6923
130 2AE2 NAP 47.6923
131 2AE2 NAP 47.6923
132 2AE2 PTO 47.6923
133 2AE2 PTO 47.6923
134 2AE2 PTO 47.6923
135 2AE2 NAP 47.6923
136 2AE2 PTO 47.6923
137 2AE2 NAP 47.6923
138 5EJ2 NAD 48.0769
139 5EJ2 NAD 48.0769
140 5EJ2 NAD 48.0769
141 5EJ2 NAD 48.0769
142 2EWM NAD 48.1928
143 2EWM NAD 48.1928
144 6Y4D NAP 48.249
145 6Y4D NAP 48.249
146 4ITU NAI 48.3271
147 4ITU NAI 48.3271
148 4ITU NAI 48.3271
149 4ITU NAI 48.3271
150 4CQM NAP 48.4615
151 4CQM NAP 48.4615
152 4CQM NAP 48.4615
153 4CQM NAP 48.4615
154 4CQM NAP 48.4615
155 4CQM NAP 48.4615
156 4CQM NAP 48.4615
157 5THQ NDP 48.4615
158 5THQ NDP 48.4615
159 5THQ NDP 48.4615
160 5THQ NDP 48.4615
161 2B4Q NAP 48.4615
162 4CQM NAP 48.4615
163 4CQM NAP 48.4615
164 4CQM NAP 48.4615
165 4CQM NAP 48.4615
166 4CQM NAP 48.4615
167 1PR9 NAP 49.1803
168 1PR9 NAP 49.1803
169 1PR9 NAP 49.1803
170 1PR9 NAP 49.1803
171 3D3W NAP 49.1803
172 3D3W NAP 49.1803
173 3D3W NAP 49.1803
174 4QED NAP 49.1936
175 4QED NAP 49.1936
176 4QED NAP 49.1936
177 4QED NAP 49.1936
178 4QED NAP 49.1936
179 4QED NAP 49.1936
180 5OVL NAP 49.2308
181 5OVL NAP 49.2308
182 5OVL NAP 49.2308
183 5OVL NAP 49.2308
184 6CI9 NAP 49.4208
185 6CI9 NAP 49.4208
186 6CI9 NAP 49.4208
187 6CI9 NAP 49.4208
188 6CI9 NAP 49.4208
189 6CI9 NAP 49.4208
190 6CI9 NAP 49.4208
191 6CI9 NAP 49.4208
192 6CI9 NAP 49.4208
193 6CI9 NAP 49.4208
194 6CI9 NAP 49.4208
195 6CI9 NAP 49.4208
196 6CI9 NAP 49.4208
197 6CI9 NAP 49.4208
198 6CI9 NAP 49.4208
199 3A28 NAD 49.6124
200 3A28 NAD 49.6124
201 3A28 NAD 49.6124
202 3A28 NAD 49.6124
203 3A28 NAD 49.6124
204 3A28 NAD 49.6124
205 3A28 NAD 49.6124
206 3A28 NAD 49.6124
207 1NFQ NAI 49.6154
208 1NFQ NAI 49.6154
209 1NFQ NAI 49.6154
210 1NFQ NAI 49.6154
211 4FN4 NAD 50
212 4FN4 NAD 50
213 4FN4 NAD 50
214 4FN4 NAD 50
215 5T2U NAP 50
216 5T2U NAP 50
217 5T2U NAP 50
218 5T2U NAP 50
Pocket No.: 2; Query (leader) PDB : 5B4T; Ligand: 3HR; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 5B4T; Ligand: 3HR; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 5B4T; Ligand: 3HR; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 5B4T; Ligand: NAD; Similar sites found with APoc: 210
This union binding pocket(no: 5) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
1 1XSE NDP 31.5385
2 5GT9 NAP 32.6923
3 3P19 NDP 33.0769
4 3P19 NDP 33.0769
5 3P19 NDP 33.0769
6 3P19 NDP 33.0769
7 3P19 NDP 33.0769
8 3P19 NDP 33.0769
9 4YAG NAI 35
10 1E3W NAD 35.7692
11 1E6W NAD 35.7692
12 1E3W NAD 35.7692
13 1E3W NAD 35.7692
14 1E6W NAD 35.7692
15 1E6W NAD 35.7692
16 1E6W NAD 35.7692
17 1E6W EST 35.7692
18 1E3W NAD 35.7692
19 3WXB NDP 35.7692
20 3WXB NDP 35.7692
21 5O98 NAP 36.1538
22 5O98 NAP 36.1538
23 1W8D NAP 36.4238
24 1W73 NAP 36.4238
25 1W8D NAP 36.4238
26 1W8D NAP 36.4238
27 1W73 NAP 36.4238
28 1W73 NAP 36.4238
29 1W73 NAP 36.4238
30 1W8D NAP 36.4238
31 5L53 NAP 36.5385
32 2BD0 NAP 37.2951
33 2BD0 NAP 37.2951
34 2BD0 NAP 37.2951
35 2BD0 NAP 37.2951
36 3TN7 NJP 37.3541
37 3TN7 NJP 37.3541
38 1W6U NAP 37.4172
39 1W6U NAP 37.4172
40 1W6U NAP 37.4172
41 1W6U NAP 37.4172
42 3RKR NAP 37.6923
43 4K26 NDP 38.4615
44 2GDZ NAD 38.8462
45 1ZBQ NAD 38.8462
46 1XG5 NAP 39.6154
47 1XG5 NAP 39.6154
48 1XG5 NAP 39.6154
49 1XG5 NAP 39.6154
50 1N5D NDP 40
51 1U7T TDT 43.0769
52 1U7T TDT 43.0769
53 2JAH NDP 44.1296
54 2JAH NDP 44.1296
55 2JAH NDP 44.1296
56 2JAH NDP 44.1296
57 5O42 9JW 44.1606
58 5O42 BGC 44.1606
59 5O42 NAD 44.1606
60 1G0N NDP 44.6154
61 1G0N NDP 44.6154
62 1G0N PHH 44.6154
63 2JAP NDP 44.9393
64 2JAP NDP 44.9393
65 2JAP NDP 44.9393
66 2JAP NDP 44.9393
67 3QWI NAP 45
68 3QWI NAP 45
69 3QWI CUE 45
70 3QWI NAP 45
71 3QWI CUE 45
72 3QWI NAP 45
73 2DKN NAI 45.098
74 4KWI 1TJ 45.3846
75 4KWI NAP 45.3846
76 4KWI 1TJ 45.3846
77 4KWI NAP 45.3846
78 6TBX NAP 45.3846
79 5K6A NAP 45.3846
80 6HOW NAP 45.3846
81 5GWT NAD 45.7692
82 5GWT SIN 45.7692
83 5GWT NAD 45.7692
84 5GWT SIN 45.7692
85 5GWT SIN 45.7692
86 5GWT SIN 45.7692
87 5GWT NAD 45.7692
88 5GWT NAD 45.7692
89 1AE1 NAP 46.1538
90 1AE1 NAP 46.1538
91 1AE1 NAP 46.1538
92 1AE1 NAP 46.1538
93 3AI3 NDP 46.5385
94 3AI3 NDP 46.5385
95 3AI3 NDP 46.5385
96 3AI3 NDP 46.5385
97 5OJI NAP 46.5385
98 3AI3 SOL 46.5385
99 3AI3 SOL 46.5385
100 5OJI ISN 46.5385
101 5OJI ISN 46.5385
102 5OJI NAP 46.5385
103 3AI3 SOL 46.5385
104 3AI3 SOL 46.5385
105 6J7U NDP 46.7433
106 4O0L NDP 46.9231
107 4O0L NDP 46.9231
108 4O0L NDP 46.9231
109 4O0L NDP 46.9231
110 6OW4 NAD 46.9231
111 6OW4 NAD 46.9231
112 6OW4 NAD 46.9231
113 6OW4 NAD 46.9231
114 6OW4 NAD 46.9231
115 6OW4 NAD 46.9231
116 6OW4 NAD 46.9231
117 6TQ5 NAP 47.1545
118 6TQ5 NAP 47.1545
119 6TQ5 NAP 47.1545
120 6TQ5 NAP 47.1545
121 3OID NDP 47.2868
122 3OID NDP 47.2868
123 3OID NDP 47.2868
124 3OID NDP 47.2868
125 3VZS NAP 47.4708
126 2AE2 PTO 47.6923
127 2AE2 NAP 47.6923
128 2AE2 PTO 47.6923
129 2AE2 NAP 47.6923
130 2AE2 NAP 47.6923
131 2AE2 NAP 47.6923
132 2AE2 PTO 47.6923
133 2AE2 PTO 47.6923
134 2AE2 PTO 47.6923
135 2AE2 NAP 47.6923
136 2AE2 PTO 47.6923
137 2AE2 NAP 47.6923
138 5EJ2 NAD 48.0769
139 5EJ2 NAD 48.0769
140 5EJ2 NAD 48.0769
141 5EJ2 NAD 48.0769
142 2EWM NAD 48.1928
143 2EWM NAD 48.1928
144 6Y4D NAP 48.249
145 6Y4D NAP 48.249
146 4ITU NAI 48.3271
147 4ITU NAI 48.3271
148 4ITU NAI 48.3271
149 4ITU NAI 48.3271
150 4CQM NAP 48.4615
151 4CQM NAP 48.4615
152 4CQM NAP 48.4615
153 4CQM NAP 48.4615
154 4CQM NAP 48.4615
155 4CQM NAP 48.4615
156 4CQM NAP 48.4615
157 5THQ NDP 48.4615
158 5THQ NDP 48.4615
159 5THQ NDP 48.4615
160 5THQ NDP 48.4615
161 2B4Q NAP 48.4615
162 4CQM NAP 48.4615
163 4CQM NAP 48.4615
164 4CQM NAP 48.4615
165 4CQM NAP 48.4615
166 4CQM NAP 48.4615
167 1PR9 NAP 49.1803
168 1PR9 NAP 49.1803
169 1PR9 NAP 49.1803
170 1PR9 NAP 49.1803
171 3D3W NAP 49.1803
172 3D3W NAP 49.1803
173 3D3W NAP 49.1803
174 4QED NAP 49.1936
175 4QED NAP 49.1936
176 4QED NAP 49.1936
177 4QED NAP 49.1936
178 4QED NAP 49.1936
179 4QED NAP 49.1936
180 5OVL NAP 49.2308
181 5OVL NAP 49.2308
182 5OVL NAP 49.2308
183 5OVL NAP 49.2308
184 6CI9 NAP 49.4208
185 6CI9 NAP 49.4208
186 6CI9 NAP 49.4208
187 6CI9 NAP 49.4208
188 6CI9 NAP 49.4208
189 6CI9 NAP 49.4208
190 6CI9 NAP 49.4208
191 6CI9 NAP 49.4208
192 6CI9 NAP 49.4208
193 6CI9 NAP 49.4208
194 6CI9 NAP 49.4208
195 6CI9 NAP 49.4208
196 6CI9 NAP 49.4208
197 6CI9 NAP 49.4208
198 6CI9 NAP 49.4208
199 3A28 NAD 49.6124
200 3A28 NAD 49.6124
201 3A28 NAD 49.6124
202 3A28 NAD 49.6124
203 3A28 NAD 49.6124
204 3A28 NAD 49.6124
205 3A28 NAD 49.6124
206 3A28 NAD 49.6124
207 1NFQ NAI 49.6154
208 1NFQ NAI 49.6154
209 1NFQ NAI 49.6154
210 1NFQ NAI 49.6154
211 4FN4 NAD 50
212 4FN4 NAD 50
213 4FN4 NAD 50
214 4FN4 NAD 50
215 5T2U NAP 50
216 5T2U NAP 50
217 5T2U NAP 50
218 5T2U NAP 50
Pocket No.: 6; Query (leader) PDB : 5B4T; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 5B4T; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 5B4T; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 5b4t.bio1) has 38 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback