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Receptor
PDB id Resolution Class Description Source Keywords
1OMZ 2.1 Å EC: 2.4.1.- CRYSTAL STRUCTURE OF MOUSE ALPHA-1,4-N-ACETYLHEXOSAMINYLTRAN (EXTL2) IN COMPLEX WITH UDPGALNAC MUS MUSCULUS ROSSMANN FOLD DXD MOTIF TRANSFERASE
Ref.: CRYSTAL STRUCTURE OF AN ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE (EXTL2), A OF THE EXOSTOSIN GENE FAMILY INVOLVED IN HEPARAN SU BIOSYNTHESIS J.BIOL.CHEM. V. 278 14420 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
EDO A:401;
B:402;
Invalid;
Invalid;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
MN A:600;
B:601;
Part of Protein;
Part of Protein;
none;
none;
submit data
54.938 Mn [Mn+2...
UD2 A:405;
B:404;
Valid;
Valid;
none;
none;
submit data
607.354 C17 H27 N3 O17 P2 CC(=O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1OMZ 2.1 Å EC: 2.4.1.- CRYSTAL STRUCTURE OF MOUSE ALPHA-1,4-N-ACETYLHEXOSAMINYLTRAN (EXTL2) IN COMPLEX WITH UDPGALNAC MUS MUSCULUS ROSSMANN FOLD DXD MOTIF TRANSFERASE
Ref.: CRYSTAL STRUCTURE OF AN ALPHA-1,4-N-ACETYLHEXOSAMINYLTRANSFERASE (EXTL2), A OF THE EXOSTOSIN GENE FAMILY INVOLVED IN HEPARAN SU BIOSYNTHESIS J.BIOL.CHEM. V. 278 14420 2003
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 26 families.
1 1ON6 - UD1 C17 H27 N3 O17 P2 CC(=O)N[C@....
2 1OMZ - UD2 C17 H27 N3 O17 P2 CC(=O)N[C@....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 23 families.
1 1ON6 - UD1 C17 H27 N3 O17 P2 CC(=O)N[C@....
2 1OMZ - UD2 C17 H27 N3 O17 P2 CC(=O)N[C@....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 1ON6 - UD1 C17 H27 N3 O17 P2 CC(=O)N[C@....
2 1OMZ - UD2 C17 H27 N3 O17 P2 CC(=O)N[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: UD2; Similar ligands found: 79
No: Ligand ECFP6 Tc MDL keys Tc
1 UD2 1 1
2 UD1 1 1
3 UDZ 0.8 0.893333
4 HP7 0.793814 0.985294
5 EPZ 0.75 0.985507
6 EPU 0.742857 0.971429
7 EEB 0.742857 0.971429
8 F5P 0.742574 0.957143
9 UD4 0.742574 0.957143
10 F5G 0.742574 0.971014
11 UFM 0.73913 0.985294
12 GUD 0.73913 0.985294
13 UPG 0.73913 0.985294
14 GDU 0.73913 0.985294
15 UD7 0.722772 0.971014
16 MJZ 0.715686 0.957143
17 U2F 0.697917 0.930556
18 UPF 0.697917 0.930556
19 UMA 0.690265 0.985507
20 UDM 0.683168 0.957143
21 UFG 0.663265 0.930556
22 12V 0.660377 0.943662
23 HWU 0.660377 0.943662
24 U22 0.655462 0.85
25 U20 0.655462 0.871795
26 U21 0.655462 0.871795
27 UGB 0.65 0.970588
28 UGA 0.65 0.970588
29 USQ 0.633663 0.835443
30 UDX 0.63 0.956522
31 UAD 0.63 0.956522
32 UDP 0.622222 0.927536
33 UTP 0.619565 0.927536
34 UAG 0.617188 0.931507
35 660 0.6 0.942857
36 URM 0.6 0.942857
37 G3N 0.596154 0.929577
38 UPU 0.587629 0.955882
39 4RA 0.584615 0.87013
40 UNP 0.583333 0.901408
41 3UC 0.575472 0.930556
42 UML 0.564286 0.871795
43 IUG 0.561404 0.825
44 U5P 0.555556 0.913043
45 U 0.555556 0.913043
46 UD0 0.552239 0.858974
47 UPP 0.543689 0.928571
48 UDH 0.543689 0.855263
49 2KH 0.530612 0.901408
50 44P 0.521277 0.888889
51 C5G 0.518519 0.930556
52 UDP UDP 0.505155 0.898551
53 Y6W 0.504673 0.90411
54 2QR 0.485075 0.860759
55 2GW 0.482759 0.943662
56 URI 0.477273 0.852941
57 UP5 0.47541 0.844156
58 PMP UD1 0.467626 0.848101
59 1GW 0.467213 0.905405
60 CJB 0.461538 0.838235
61 UAG API 0.457516 0.87013
62 4TC 0.456 0.822785
63 CSV 0.452991 0.866667
64 CSQ 0.452991 0.866667
65 U3P 0.447917 0.898551
66 UA3 0.447917 0.898551
67 U U 0.446429 0.914286
68 NG1 0.444444 0.753623
69 GN1 0.444444 0.753623
70 C30 0.433628 0.696203
71 PUP 0.429825 0.875
72 CXY 0.422414 0.90411
73 A U 0.418605 0.820513
74 U2P 0.418367 0.913043
75 UMA FGA LYS DAL DAL 0.414634 0.8375
76 U1S 0.409091 0.789474
77 FN5 0.40458 0.883117
78 DAU 0.403361 0.905405
79 G U 0.401515 0.780488
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: 58
This union binding pocket(no: 1) in the query (biounit: 1omz.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 2CB8 MYA None
2 2D7I UDP 1.36519
3 1O7Q GAL NAG 1.7301
4 1O7Q UDP 1.7301
5 1GA8 DEL 2.04778
6 1GA8 UPF 2.04778
7 1EDO NAP 2.04918
8 2AGD NAG MAN BMA 2.09059
9 2AGD UDH 2.09059
10 3CU0 GAL GAL SO4 2.13523
11 3CU0 UDP 2.13523
12 3WLV AZA 2.38908
13 3IOI 1GW 2.38908
14 4IRP UDP 2.39044
15 1VAY AZA 2.43902
16 1LL2 UPG 2.73038
17 2WZG UPG 2.73038
18 3ZF8 GDP 2.73038
19 4M4K XYP XYP 2.78746
20 4M4K GDU 2.78746
21 3CKJ CIT 3.07167
22 6BR7 BEF 3.7594
23 2QGI UDP 4.03226
24 1KEW NAD 4.09556
25 1V84 UDP 4.34783
26 1OC2 NAD 4.43686
27 1OC2 TDX 4.43686
28 3U2U UDP 4.56274
29 3ZGJ RMN 5.11945
30 6C0B MLI 5.12821
31 5Z2L NDP 5.30612
32 2BO4 FLC 6.14334
33 6CGZ HL6 6.38298
34 1QGQ UDP 6.66667
35 2APC UDM 6.72515
36 4IF4 BEF 6.73077
37 2FFU UDP 7.16724
38 5NDF UDP 7.16724
39 5AJP UDP 7.16724
40 5NDF LU2 7.16724
41 3JQ8 NAP 7.50853
42 3BMN NAP 7.50853
43 4CM9 NAP 7.50853
44 5K6A NAP 7.50853
45 3JQ9 NAP 7.50853
46 3JQF NAP 7.50853
47 3BMQ NAP 7.50853
48 4CM8 NAP 7.50853
49 2VZ0 NAP 8.20895
50 2VZ0 D64 8.20895
51 5VCM UDP 9.55631
52 5MM0 GDD 13.6519
53 3V91 UPG 13.7457
54 6H21 UD1 18.7713
55 2J0B UDP 23.2143
56 1YRO GDU 30.0813
57 2FKA BEF 31.0078
58 6H0B UDP 31.25
Pocket No.: 2; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: 8
This union binding pocket(no: 2) in the query (biounit: 1omz.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 1LNX URI None
2 5IKI A9H 2.73038
3 2Q2V NAD 3.13725
4 1R6D DAU 6.48464
5 5E70 RCD 6.48464
6 3K4Q IHS 7.16724
7 5JDC NAP 7.50853
8 4CME NAP 7.50853
Pocket No.: 3; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: 1
This union binding pocket(no: 3) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 4MPO AMP 18.3007
Pocket No.: 4; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: 1
This union binding pocket(no: 7) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 6BS6 GLC GLC GLC 10.9215
Pocket No.: 8; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 10; Query (leader) PDB : 1OMZ; Ligand: UD2; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 10) in the query (biounit: 1omz.bio2) has 22 residues
No: Leader PDB Ligand Sequence Similarity
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