Receptor
PDB id Resolution Class Description Source Keywords
1VB9 2.2 Å EC: 3.2.1.1 CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-A (TVA II) COMPLEXED WITH TRANSGLYCOSYLATED PRODUCT THERMOACTINOMYCES VULGARIS (BETA/ALPHA)8 BARREL GH FAMILY 13 HYDROLASE
Ref.: THE CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS ALPHA-AMYLASE II (TVA II) COMPLEXED WITH TRANSGLYCO PRODUCT EUR.J.BIOCHEM. V. 271 2530 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:601;
B:602;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
GLC GLC GLC GLC GLC GLC D:1;
C:1;
Valid;
Valid;
none;
none;
submit data
972.846 n/a OCC1O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1VB9 2.2 Å EC: 3.2.1.1 CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-A (TVA II) COMPLEXED WITH TRANSGLYCOSYLATED PRODUCT THERMOACTINOMYCES VULGARIS (BETA/ALPHA)8 BARREL GH FAMILY 13 HYDROLASE
Ref.: THE CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS ALPHA-AMYLASE II (TVA II) COMPLEXED WITH TRANSGLYCO PRODUCT EUR.J.BIOCHEM. V. 271 2530 2004
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 19 families.
1 1VB9 - GLC GLC GLC GLC GLC GLC n/a n/a
2 2D2O - GLC GLC GLC GLC GLC GLC n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 15 families.
1 1VB9 - GLC GLC GLC GLC GLC GLC n/a n/a
2 2D2O - GLC GLC GLC GLC GLC GLC n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1J0I - GLC GLC GLC n/a n/a
2 1VB9 - GLC GLC GLC GLC GLC GLC n/a n/a
3 2D2O - GLC GLC GLC GLC GLC GLC n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GLC GLC GLC GLC GLC GLC; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 GLC GLC GLC GLC GLC GLC GLC 1 1
2 GLC GLC GLC GLC GLC GLC 1 1
3 GLC GLC GLC GLC GLC GLC GLC GLC 1 1
4 GLC GLC GLC GLC 0.510638 0.939394
Similar Ligands (3D)
Ligand no: 1; Ligand: GLC GLC GLC GLC GLC GLC; Similar ligands found: 4
No: Ligand Similarity coefficient
1 BGC BGC BGC BGC BGC BGC 0.9686
2 GLC AC1 GLC AC1 0.9208
3 BGC AC1 GLC AC1 0.9117
4 BGC G6D GLC ACI GLD ACI 0.8960
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1VB9; Ligand: GLC GLC GLC GLC GLC GLC; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1vb9.bio2) has 24 residues
No: Leader PDB Ligand Sequence Similarity
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