Receptor
PDB id Resolution Class Description Source Keywords
1VB9 2.2 Å EC: 3.2.1.135 CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA- AMYLASE II (TVA II) COMPLEXED WITH TRANSGLYCOSYLATED P RODUCT THERMOACTINOMYCES VULGARIS (BETA/ALPHA)8 BARREL GH FAMILY 13 HYDROLASE
Ref.: THE CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE II (TVA II) COMPLEXED WITH TRANSGLYCOSYLATED PRODUCT EUR.J.BIOCHEM. V. 271 2530 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:601;
B:602;
Part of Protein;
Part of Protein;
none;
none;
submit data
40.078 Ca [Ca+2...
GLC GLC GLC GLC GLC GLC A:701;
B:701;
Valid;
Valid;
none;
none;
submit data
972.846 n/a OCC1O...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1VB9 2.2 Å EC: 3.2.1.135 CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA- AMYLASE II (TVA II) COMPLEXED WITH TRANSGLYCOSYLATED P RODUCT THERMOACTINOMYCES VULGARIS (BETA/ALPHA)8 BARREL GH FAMILY 13 HYDROLASE
Ref.: THE CRYSTAL STRUCTURE OF THERMOACTINOMYCES VULGARIS R-47 ALPHA-AMYLASE II (TVA II) COMPLEXED WITH TRANSGLYCOSYLATED PRODUCT EUR.J.BIOCHEM. V. 271 2530 2004
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1VB9 - GLC GLC GLC GLC GLC GLC n/a n/a
2 2D2O - GLC GLC GLC GLC GLC GLC n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1VB9 - GLC GLC GLC GLC GLC GLC n/a n/a
2 2D2O - GLC GLC GLC GLC GLC GLC n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1J0I - GLC GLC GLC n/a n/a
2 1VB9 - GLC GLC GLC GLC GLC GLC n/a n/a
3 2D2O - GLC GLC GLC GLC GLC GLC n/a n/a
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GLC GLC GLC GLC GLC GLC; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 RCD 1 1
2 BCD 1 1
3 GLC GLC GLC GLC GLC GLC 1 1
4 GLC GLC GLC GLC GLC GLC GLC 1 1
5 GLC GLC GLC GLC GLC GLC GLC GLC 1 1
6 ACX 1 1
7 4CQ 0.529412 0.911765
8 GLC GLC GLC GLC 0.510638 0.939394
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1VB9; Ligand: GLC GLC GLC GLC GLC GLC; Similar sites found with APoc: 2
This union binding pocket(no: 1) in the query (biounit: 1vb9.bio2) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 6BS6 GLC GLC GLC GLC GLC GLC GLC 10.2564
2 5A2B MAL 46.2777
APoc FAQ
Feedback