Receptor
PDB id Resolution Class Description Source Keywords
2B4F 1.95 Å EC: 3.2.1.8 STRUCTURE OF A COLD-ADAPTED FAMILY 8 XYLANASE IN COMPLEX WIT SUBSTRATE PSEUDOALTEROMONAS HALOPLANKTIS HYDROLASE XYLAN DEGRADATION PSYCHROPHILIC COLD ADAPTATIONTEMPERATURE GLYCOSYL HYDROLASE FAMILY 8
Ref.: OLIGOSACCHARIDE BINDING IN FAMILY 8 GLYCOSIDASES: C STRUCTURES OF ACTIVE-SITE MUTANTS OF THE BETA-1,4-X PXYL FROM PSEUDOALTERMONAS HALOPLANKTIS TAH3A IN CO WITH SUBSTRATE AND PRODUCT. BIOCHEMISTRY V. 45 4797 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
XYP XYP XYP XYP XYP B:1;
C:1;
 Valid;
Valid;
 none;
none;
 submit data
678.59 n/a O(C1C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1H12 1.2 Å EC: 3.2.1.8 STRUCTURE OF A COLD-ADAPTED FAMILY 8 XYLANASE PSEUDOALTEROMONAS HALOPLANKTIS HYDROLASE XYLAN DEGRADATION PSYCHROPHILIC COLD ADAPTATIONTEMPERATURE GLYCOSYL HYDROLASE FAMILY 8
Ref.: THE STRUCTURE OF A COLD-ADAPTED FAMILY 8 XYLANASE A RESOLUTION: STRUCTURAL ADAPTATIONS TO COLD AND INVE OF THE ACTIVE SITE J.BIOL.CHEM. V. 278 7531 2003
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 34 families.
1 1H12 - XYS C5 H10 O5 C1[C@H]([C....
2 2B4F - XYP XYP XYP XYP XYP n/a n/a
3 1XWQ - XYP XYP XYP n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 32 families.
1 1H12 - XYS C5 H10 O5 C1[C@H]([C....
2 2B4F - XYP XYP XYP XYP XYP n/a n/a
3 1XWQ - XYP XYP XYP n/a n/a
50% Homology Family (13)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 6TO0 - XYP XYP XYP AHR n/a n/a
2 6SRD - XYP C5 H10 O5 C1[C@H]([C....
3 6SUD - XYP C5 H10 O5 C1[C@H]([C....
4 6TOW - XYP XYP XYP XYP n/a n/a
5 6TRH - XYP XYP XYP AHR XYP n/a n/a
6 1H12 - XYS C5 H10 O5 C1[C@H]([C....
7 2B4F - XYP XYP XYP XYP XYP n/a n/a
8 1XWQ - XYP XYP XYP n/a n/a
9 1WU6 - XYP XYP n/a n/a
10 1WU5 - XYP C5 H10 O5 C1[C@H]([C....
11 6G09 - XYP XYP n/a n/a
12 6G0B - XYP XYP XYP n/a n/a
13 6G0N - XYP XYP XYP XYP XYP XYP n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: XYP XYP XYP XYP XYP; Similar ligands found: 22
No: Ligand ECFP6 Tc MDL keys Tc
1 XYP XYP XYP XYP XYP XYP 1 1
2 XYP XYP XYP XYP XYP XYP XYP 1 1
3 XYP XYP XYP XYP XYP 1 1
4 XYS XYS XYS 0.791667 0.969697
5 XYP XYP XYP AHR XYP 0.636364 0.888889
6 XYP XYP XYP XYP 0.622642 0.941176
7 XYP XYP AHR XYP 0.590909 0.888889
8 XYP XYP XYP AHR 0.575758 0.888889
9 XYS AHR XYP XYP XYP 0.560606 0.888889
10 XYP XYP XYP 0.559322 0.969697
11 XYS XYS 0.511111 0.939394
12 XYP TRS XYP 0.508197 0.711111
13 XYP XYP GCV XYP 0.506494 0.888889
14 XYS AZI XYS 0.5 0.653061
15 XYP XYP XYP GCV 0.493506 0.888889
16 XYP XYP 0.490566 0.911765
17 XYS XYS AHR 0.484848 0.888889
18 XYP XYP AHR 0.484848 0.888889
19 XYS NPO XYS 0.455882 0.615385
20 XYP XIF 0.438596 0.659574
21 XYP XDN 0.438596 0.704545
22 XYP XYP GCV 0.415584 0.888889
Similar Ligands (3D)
Ligand no: 1; Ligand: XYP XYP XYP XYP XYP; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1H12; Ligand: XYS; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1h12.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1H12; Ligand: XYP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1h12.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback