Receptor
PDB id Resolution Class Description Source Keywords
3K5X 1.4 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF DIPEPTIDASE FROM STREPTOMICS COELICOLOR COMPLEXED WITH PHOSPHINATE PSEUDODIPEPTIDE L-ALA-D-ASP AT 1 .4A RESOLUTION. STREPTOMYCES COELICOLOR DIPEPTIDASE FROM STREPTOMICS COELICOLOR THE CLOSEST BACTERIAL HOMOLOG TO HUMAN RENAL DIPEPTIDASE PHOSPHINATE PSEUDODIPEPTIDE L-ALA-D-ASP
Ref.: STRUCTURE, MECHANISM, AND SUBSTRATE PROFILE FOR SCO3058: THE CLOSEST BACTERIAL HOMOLOGUE TO HUMAN RENAL DIPEPTIDASE . BIOCHEMISTRY V. 49 611 2010
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
P8D A:401;
Valid;
none;
Ki = 390 nM
239.163 C7 H14 N O6 P C[C@H...
ZN A:402;
A:403;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3K5X 1.4 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF DIPEPTIDASE FROM STREPTOMICS COELICOLOR COMPLEXED WITH PHOSPHINATE PSEUDODIPEPTIDE L-ALA-D-ASP AT 1 .4A RESOLUTION. STREPTOMYCES COELICOLOR DIPEPTIDASE FROM STREPTOMICS COELICOLOR THE CLOSEST BACTERIAL HOMOLOG TO HUMAN RENAL DIPEPTIDASE PHOSPHINATE PSEUDODIPEPTIDE L-ALA-D-ASP
Ref.: STRUCTURE, MECHANISM, AND SUBSTRATE PROFILE FOR SCO3058: THE CLOSEST BACTERIAL HOMOLOGUE TO HUMAN RENAL DIPEPTIDASE . BIOCHEMISTRY V. 49 611 2010
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 3ITC Ki = 25 mM CIT C6 H8 O7 C(C(=O)O)C....
2 3K5X Ki = 390 nM P8D C7 H14 N O6 P C[C@H](N)[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 3ITC Ki = 25 mM CIT C6 H8 O7 C(C(=O)O)C....
2 3K5X Ki = 390 nM P8D C7 H14 N O6 P C[C@H](N)[....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 173 families.
1 3ITC Ki = 25 mM CIT C6 H8 O7 C(C(=O)O)C....
2 3K5X Ki = 390 nM P8D C7 H14 N O6 P C[C@H](N)[....
3 1ITU - CIL C16 H26 N2 O5 S CC1(C[C@@H....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: P8D; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 P8D 1 1
2 2D8 0.552632 0.914286
3 LY0 0.552632 0.914286
4 AEP 0.488372 0.815789
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3K5X; Ligand: P8D; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3k5x.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 3K5X; Ligand: P8D; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 3k5x.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 3K5X; Ligand: P8D; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 3k5x.bio2) has 16 residues
No: Leader PDB Ligand Sequence Similarity
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