Receptor
PDB id Resolution Class Description Source Keywords
6BYT 2.2 Å EC: 4.-.-.- COMPLEX STRUCTURE OF LOR107 MUTANT (R320) WITH TETRASACCHARI SUBSTRATE ALTEROMONAS SP. LOR COMPLEX OF LOR107 (R320) LYASE
Ref.: STRUCTURE-FUNCTION ANALYSES OF A PL24 FAMILY ULVAN REVEAL KEY FEATURES AND SUGGEST ITS CATALYTIC MECHA J. BIOL. CHEM. V. 293 4026 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA B:602;
A:602;
A:601;
B:601;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
40.078 Ca [Ca+2...
SO4 B:606;
B:605;
B:603;
A:605;
B:604;
A:603;
A:604;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
none;
none;
 submit data
96.063 O4 S [O-]S...
GOL A:606;
B:607;
B:608;
 Invalid;
Invalid;
Invalid;
 none;
none;
none;
 submit data
92.094 C3 H8 O3 C(C(C...
83Y BDP 83Y GCD C:1;
D:1;
 Valid;
Valid;
 none;
none;
 submit data
800.626 n/a S(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6BYT 2.2 Å EC: 4.-.-.- COMPLEX STRUCTURE OF LOR107 MUTANT (R320) WITH TETRASACCHARI SUBSTRATE ALTEROMONAS SP. LOR COMPLEX OF LOR107 (R320) LYASE
Ref.: STRUCTURE-FUNCTION ANALYSES OF A PL24 FAMILY ULVAN REVEAL KEY FEATURES AND SUGGEST ITS CATALYTIC MECHA J. BIOL. CHEM. V. 293 4026 2018
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 62 families.
1 6BYX - 83Y BDP 83Y GCD n/a n/a
2 6BYT - 83Y BDP 83Y GCD n/a n/a
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 59 families.
1 6BYX - 83Y BDP 83Y GCD n/a n/a
2 6BYT - 83Y BDP 83Y GCD n/a n/a
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 47 families.
1 6BYX - 83Y BDP 83Y GCD n/a n/a
2 6BYT - 83Y BDP 83Y GCD n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 83Y BDP 83Y GCD; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 83Y BDP 83Y GCD 1 1
2 GCU MAV MAW 0.588889 0.632653
3 MAV LGU MAV BEM 0.588889 0.632653
4 ASG BDP ASG GCD 0.504274 0.738462
5 LGU MAW 0.488889 0.612245
6 GTR RAM AQA 0.484848 0.632653
7 RAM GAD 0.461538 0.612245
8 ASG GCD 0.407407 0.71875
Similar Ligands (3D)
Ligand no: 1; Ligand: 83Y BDP 83Y GCD; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6BYT; Ligand: 83Y BDP 83Y GCD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6byt.bio2) has 23 residues
No: Leader PDB Ligand Sequence Similarity
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