Receptor
PDB id Resolution Class Description Source Keywords
6LX2 2.05 Å EC: 2.4.1.25 POTATO D-ENZYME COMPLEXED WITH CA26 SOLANUM TUBEROSUM D-ENZYME DISPROPORTIONATING ENZYME POTATO CYCLOAMYLOSE STUBEROSUM PLANT PROTEIN TRANSFERASE
Ref.: STRUCTURAL ANALYSIS AND REACTION MECHANISM OF THE DISPROPORTIONATING ENZYME (D-ENZYME) FROM POTATO. PROTEIN SCI. V. 29 2085 2020
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:612;
 Part of Protein;
 none;
 submit data
40.078 Ca [Ca+2...
G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D B:1;
 Valid;
 none;
 submit data
1785.57 n/a O(C1C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6LX2 2.05 Å EC: 2.4.1.25 POTATO D-ENZYME COMPLEXED WITH CA26 SOLANUM TUBEROSUM D-ENZYME DISPROPORTIONATING ENZYME POTATO CYCLOAMYLOSE STUBEROSUM PLANT PROTEIN TRANSFERASE
Ref.: STRUCTURAL ANALYSIS AND REACTION MECHANISM OF THE DISPROPORTIONATING ENZYME (D-ENZYME) FROM POTATO. PROTEIN SCI. V. 29 2085 2020
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 6LX2 - G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D n/a n/a
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 5CPS - GLC GLC GLC GLC GLC GLC GLC GLC GLC n/a n/a
2 5CSY - BGC GLC GLC n/a n/a
3 5CQ1 - GLC C6 H12 O6 C([C@@H]1[....
4 6LX2 - G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D n/a n/a
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 5 families.
1 5CPS - GLC GLC GLC GLC GLC GLC GLC GLC GLC n/a n/a
2 5CSY - BGC GLC GLC n/a n/a
3 5CQ1 - GLC C6 H12 O6 C([C@@H]1[....
4 6LX2 - G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D; Similar ligands found: 59
No: Ligand ECFP6 Tc MDL keys Tc
1 G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D 1 1
2 BGC Z9D 0.882353 1
3 GLC GLC GLC GLC BGC GLC GLC 0.637931 0.970588
4 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.637931 0.970588
5 MAN BMA BMA BMA BMA BMA BMA 0.637931 0.970588
6 GLC GLC AC1 0.569231 0.727273
7 BGC BGC BGC BGC BGC BGC BGC BGC 0.552239 0.970588
8 BMA BMA BMA BMA 0.552239 0.914286
9 BGC GLC GLC GLC 0.542857 0.970588
10 GLC GLC GLC GLC GLC 0.542857 0.970588
11 BMA BMA BMA BMA GLA 0.535211 0.970588
12 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.513889 0.970588
13 BGC BGC BGC XYS 0.513158 0.971429
14 G2F SHG BGC BGC 0.507463 0.868421
15 GAL GLC GLD ACI 0.5 0.755556
16 BGC GAL NGA 0.5 0.717391
17 BGC GAL GLA 0.492537 0.970588
18 BGC BGC BGC BGC XYS BGC XYS BGC BGC 0.4875 0.971429
19 BGC BGC BGC BGC BGC XYS 0.4875 0.971429
20 BGC BGC BGC XYS BGC XYS BGC XYS BGC 0.4875 0.971429
21 BGC GLC GLC 0.485714 0.970588
22 TXT 0.47561 0.790698
23 BGC GLC AGL GLC GLC GLC 0.47561 0.702128
24 BGC GLA GAL 0.47541 0.970588
25 BGC GAL NGA GAL 0.474359 0.717391
26 MAN BMA BMA 0.463768 0.971429
27 BGC BGC BGC XYS BGC XYS 0.4625 0.971429
28 GLC GLC GLC GLC GLC GLC AC1 0.458824 0.6875
29 GLC GLC GLC AC1 0.458824 0.6875
30 BGC SGA 0.457143 0.647059
31 BGC BGC BGC XYS BGC XYS XYS 0.45679 0.971429
32 BGC GLC AC1 GLC GLC GLC AC1 0.454545 0.723404
33 GLC GLC GLC G6D ACI GLC GLC 0.454545 0.755556
34 GLC GLC GLC DAF DAF 0.454545 0.723404
35 BGC G6D GLC ACI G6D ACI 0.454545 0.723404
36 BGC GAL GLA NGA 0.445783 0.717391
37 BGC GAL GLA NGA GAL 0.440476 0.717391
38 BGC DAF 0.4375 0.755556
39 BGC GAL FUC 0.432432 0.942857
40 GLC GAL BGC FUC 0.432432 0.942857
41 GLC GLC FRU 0.43038 0.846154
42 BGC BGC BGC XYS XYS GAL GAL 0.425287 0.971429
43 G2F BGC BGC BGC BGC BGC 0.424658 0.846154
44 GLC GLC AC1 GLC GLC GLC 0.419355 0.6875
45 GLC GLC AGL HMC GLC 0.419355 0.6875
46 GLC GLC G6D GLC ACI GLC 0.419355 0.6875
47 BGC GLC GLD GLC ACI GLD GLC ACI G6D 0.419355 0.64
48 BGC BGC BGC XYS BGC XYS GAL 0.41573 0.971429
49 GLC GLC G6D GLC ACI G6D ACI 0.414894 0.66
50 GLC GLC GLD GLC ACI GLD GLC ACI GLD ACI 0.414894 0.66
51 GLC AC1 GLC AC1 0.414894 0.66
52 G3I 0.413333 0.790698
53 G2I 0.413333 0.790698
54 BGC OXZ BGC 0.413333 0.708333
55 BGC GLC AGL GLC HMC AGL 0.410526 0.64
56 MGL GAL 0.409091 0.916667
57 GLC BGC G6D ACI 0.409091 0.755556
58 BGC 5VQ GAL GLA 0.402778 0.868421
59 GLC GLC GLC SGC PO4 GLC 0.402174 0.647059
Similar Ligands (3D)
Ligand no: 1; Ligand: G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6LX2; Ligand: G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D G4D; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6lx2.bio1) has 33 residues
No: Leader PDB Ligand Sequence Similarity
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