Receptor
PDB id Resolution Class Description Source Keywords
1BUC 2.5 Å EC: 1.3.99.2 THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROGENASE FRO MEGASPHAERA ELSDENII MEGASPHAERA ELSDENII ACYL-COA DEHYDROGENASE SHORT-CHAIN ACYL-COA DEHYDROGENASE FLAVOPROTEIN OXIDOREDUCTASE
Ref.: THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROG FROM MEGASPHAERA ELSDENII. BIOCHEMISTRY V. 34 2163 1995
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CAA A:384;
B:384;
Valid;
Valid;
none;
none;
submit data
851.607 C25 H40 N7 O18 P3 S CC(=O...
FAD A:385;
B:385;
Valid;
Valid;
none;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1BUC 2.5 Å EC: 1.3.99.2 THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROGENASE FRO MEGASPHAERA ELSDENII MEGASPHAERA ELSDENII ACYL-COA DEHYDROGENASE SHORT-CHAIN ACYL-COA DEHYDROGENASE FLAVOPROTEIN OXIDOREDUCTASE
Ref.: THREE-DIMENSIONAL STRUCTURE OF BUTYRYL-COA DEHYDROG FROM MEGASPHAERA ELSDENII. BIOCHEMISTRY V. 34 2163 1995
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1BUC - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 4L1F - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 1BUC - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
50% Homology Family (22)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1UDY - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 3MDE - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 3MDD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 4L1F - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
5 2R0N - TGC C25 H40 N7 O19 P3 S2 CC(C)(CO[P....
6 1SIQ - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
7 5AHS - COA C21 H36 N7 O16 P3 S CC(C)(CO[P....
8 5AF7 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
9 1EGD - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
10 3PFD - FDA C27 H35 N9 O15 P2 Cc1cc2c(cc....
11 3GQT - UFO C11 H17 N3 CN1CCN(c2c....
12 3GNC - QQQ C10 H12 N2 O3 S CC(C)n1c2c....
13 1JQI - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
14 1BUC - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
15 6AF6 - PRO GLY n/a n/a
16 5ZW2 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
17 5ZW7 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
18 5ZW8 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
19 1UKW - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
20 3MPJ - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
21 3MPI - GRA C26 H42 N7 O19 P3 S CC(C)(CO[P....
22 1RX0 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CAA; Similar ligands found: 144
No: Ligand ECFP6 Tc MDL keys Tc
1 CAA 1 1
2 MLC 0.912 0.988506
3 1VU 0.880952 0.977273
4 ACO 0.879032 0.977273
5 BCO 0.867188 0.988506
6 IVC 0.867188 1
7 1HE 0.867188 0.966292
8 3HC 0.867188 1
9 SCA 0.853846 0.988506
10 3KK 0.850394 0.988506
11 CAO 0.848 0.955056
12 COS 0.848 0.965909
13 HGG 0.847328 0.988506
14 2MC 0.844961 0.945055
15 OXK 0.84375 0.988506
16 SOP 0.84375 0.965909
17 FAQ 0.840909 0.988506
18 CO6 0.837209 0.988506
19 HXC 0.834586 0.966292
20 GRA 0.834586 0.988506
21 TGC 0.828358 0.977273
22 MC4 0.825758 0.934783
23 CO8 0.822222 0.966292
24 FYN 0.821705 0.988372
25 MCA 0.818182 0.977273
26 COO 0.818182 0.988506
27 MYA 0.816176 0.966292
28 5F9 0.816176 0.966292
29 UCC 0.816176 0.966292
30 DCC 0.816176 0.966292
31 ST9 0.816176 0.966292
32 MFK 0.816176 0.966292
33 COK 0.815385 0.965909
34 0T1 0.809524 0.965517
35 COA 0.809524 0.988372
36 CMC 0.80916 0.965909
37 DCA 0.808 0.943182
38 IRC 0.80597 1
39 1GZ 0.80597 0.977273
40 BYC 0.80597 0.988506
41 COW 0.80597 0.977273
42 30N 0.804688 0.904255
43 CS8 0.804348 0.955556
44 BCA 0.8 0.977273
45 HDC 0.798561 0.966292
46 A1S 0.796992 0.965909
47 ETB 0.793651 0.910112
48 COF 0.792593 0.944444
49 AMX 0.790698 0.976744
50 YNC 0.787234 0.977273
51 2CP 0.785185 0.955056
52 SCO 0.784615 0.965517
53 CMX 0.784615 0.965517
54 2NE 0.782609 0.966292
55 1CZ 0.782609 0.977273
56 2KQ 0.779412 0.966292
57 3CP 0.779412 0.965909
58 FAM 0.778626 0.94382
59 FCX 0.778626 0.933333
60 4CA 0.773723 0.955056
61 HAX 0.772727 0.94382
62 WCA 0.765957 0.966292
63 CAJ 0.762963 0.94382
64 SCD 0.762963 0.965517
65 CA6 0.761194 0.876289
66 MCD 0.761194 0.94382
67 4KX 0.760563 0.955556
68 CIC 0.757143 0.965909
69 CCQ 0.757143 0.945055
70 NMX 0.755556 0.893617
71 MRR 0.755245 0.966292
72 MRS 0.755245 0.966292
73 1CV 0.753521 0.988506
74 0FQ 0.751773 0.965909
75 4CO 0.751773 0.955056
76 DAK 0.75 0.955556
77 01A 0.746479 0.923913
78 0ET 0.746479 0.944444
79 8Z2 0.744828 0.955556
80 CA8 0.741007 0.895833
81 YE1 0.73913 0.954545
82 NHW 0.736111 0.944444
83 NHM 0.736111 0.944444
84 UOQ 0.736111 0.944444
85 HFQ 0.731034 0.944444
86 1HA 0.724832 0.966292
87 NHQ 0.722973 0.977012
88 UCA 0.722581 0.966292
89 S0N 0.72028 0.94382
90 01K 0.72 0.965909
91 7L1 0.718518 0.977273
92 COT 0.715232 0.965909
93 F8G 0.715232 0.924731
94 CA3 0.694805 0.965909
95 CA5 0.683544 0.923913
96 CO7 0.678322 0.988506
97 93P 0.658385 0.955056
98 COD 0.656716 0.976744
99 93M 0.648485 0.955056
100 HMG 0.64 0.954545
101 COA PLM 0.631579 0.933333
102 PLM COA 0.631579 0.933333
103 4BN 0.62069 0.924731
104 5TW 0.62069 0.924731
105 OXT 0.618497 0.924731
106 JBT 0.594444 0.905263
107 BSJ 0.570621 0.934066
108 ASP ASP ASP ILE CMC NH2 0.552941 0.922222
109 PAP 0.544715 0.802326
110 191 0.538462 0.876289
111 RFC 0.508982 0.966292
112 SFC 0.508982 0.966292
113 ACE SER ASP ALY THR NH2 COA 0.508108 0.922222
114 PPS 0.507812 0.744681
115 A3P 0.495935 0.790698
116 0WD 0.489933 0.78022
117 PTJ 0.439716 0.862069
118 3AM 0.435484 0.77907
119 3OD 0.429577 0.816092
120 PUA 0.427673 0.811111
121 A22 0.427536 0.804598
122 A2D 0.421875 0.793103
123 PAJ 0.421429 0.873563
124 AGS 0.41791 0.818182
125 SAP 0.41791 0.818182
126 ATR 0.41791 0.790698
127 OAD 0.415493 0.816092
128 ADP 0.412214 0.813953
129 A2R 0.410072 0.804598
130 9X8 0.405594 0.818182
131 NA7 0.405594 0.848837
132 BA3 0.40458 0.793103
133 HEJ 0.402985 0.813953
134 ATP 0.402985 0.813953
135 B4P 0.401515 0.793103
136 AP5 0.401515 0.793103
137 ADQ 0.401408 0.795455
138 48N 0.401316 0.8
139 ME8 0.4 0.833333
140 5FA 0.4 0.813953
141 AR6 0.4 0.793103
142 AQP 0.4 0.813953
143 2A5 0.4 0.837209
144 APR 0.4 0.793103
Ligand no: 2; Ligand: FAD; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 FAD 1 1
2 FAS 1 1
3 FAY 0.859259 0.9875
4 RFL 0.852941 0.963855
5 6FA 0.794118 0.987654
6 FAE 0.751773 0.987654
7 SFD 0.651007 0.860215
8 FDA 0.641892 0.906977
9 FNK 0.602564 0.876405
10 62F 0.572327 0.939024
11 F2N 0.566265 0.886364
12 FMN 0.543307 0.876543
13 FA9 0.526316 0.939759
14 6YU 0.516304 0.860215
15 P6G FDA 0.511628 0.908046
16 FAD NBT 0.508876 0.83871
17 A2D 0.504065 0.875
18 P5F 0.491329 0.941176
19 FAD CNX 0.488506 0.8125
20 AR6 0.488372 0.851852
21 APR 0.488372 0.851852
22 AGS 0.484615 0.811765
23 SAP 0.484615 0.811765
24 M33 0.484375 0.864198
25 BA3 0.484127 0.875
26 HEJ 0.48062 0.851852
27 ATP 0.48062 0.851852
28 ADP 0.480315 0.851852
29 B4P 0.480315 0.875
30 AP5 0.480315 0.875
31 ANP 0.477273 0.831325
32 AQP 0.476923 0.851852
33 5FA 0.476923 0.851852
34 48N 0.469388 0.902439
35 OAD 0.467626 0.876543
36 9X8 0.467626 0.833333
37 FAD NBA 0.467033 0.793814
38 GTA 0.465753 0.892857
39 AN2 0.465116 0.841463
40 AT4 0.465116 0.821429
41 AD9 0.462121 0.831325
42 3OD 0.460993 0.876543
43 RBF 0.460938 0.790123
44 FB0 0.460606 0.835165
45 139 0.460526 0.858824
46 AP0 0.46 0.835294
47 A22 0.459854 0.864198
48 ACP 0.458015 0.853659
49 8QN 0.456522 0.864198
50 PRX 0.454545 0.831325
51 A3R 0.453237 0.86747
52 A1R 0.453237 0.86747
53 G3A 0.452055 0.902439
54 T5A 0.45098 0.872093
55 G5P 0.44898 0.902439
56 ATF 0.448529 0.821429
57 50T 0.44697 0.819277
58 6YZ 0.445255 0.853659
59 ACQ 0.444444 0.853659
60 CNV FAD 0.443182 0.917647
61 ADQ 0.442857 0.853659
62 PAJ 0.442857 0.847059
63 5AL 0.441176 0.864198
64 ADX 0.439394 0.775281
65 CA0 0.439394 0.853659
66 A4P 0.437909 0.831461
67 25L 0.4375 0.864198
68 P33 FDA 0.436464 0.817204
69 5SV 0.435714 0.793103
70 OMR 0.434211 0.818182
71 TXE 0.434211 0.890244
72 ABM 0.434109 0.829268
73 A 0.433071 0.82716
74 AMP 0.433071 0.82716
75 4AD 0.432624 0.855422
76 ADJ 0.432258 0.818182
77 B5M 0.431507 0.878049
78 B5Y 0.431507 0.878049
79 BIS 0.430556 0.802326
80 SRA 0.429688 0.788235
81 AFH 0.42953 0.825581
82 NXX 0.427632 0.865854
83 DND 0.427632 0.865854
84 UP5 0.427632 0.878049
85 6V0 0.427632 0.857143
86 TXD 0.427632 0.890244
87 DQV 0.426667 0.8875
88 SRP 0.42446 0.843373
89 PR8 0.423611 0.837209
90 T99 0.423358 0.821429
91 TAT 0.423358 0.821429
92 AMO 0.422535 0.865854
93 TXA 0.42069 0.865854
94 FYA 0.42069 0.864198
95 PTJ 0.42069 0.835294
96 CNA 0.420382 0.865854
97 00A 0.41958 0.823529
98 AHX 0.41958 0.835294
99 MAP 0.41844 0.811765
100 NAI 0.418301 0.845238
101 AU1 0.41791 0.831325
102 A12 0.416667 0.843373
103 AP2 0.416667 0.843373
104 25A 0.415493 0.851852
105 9ZA 0.415493 0.845238
106 9ZD 0.415493 0.845238
107 COD 0.415094 0.842697
108 4TC 0.412903 0.879518
109 APC 0.411765 0.843373
110 ME8 0.410959 0.806818
111 1ZZ 0.410959 0.806818
112 NB8 0.410959 0.835294
113 4UW 0.409091 0.825581
114 NAX 0.409091 0.837209
115 F2R 0.408805 0.850575
116 RBY 0.408759 0.843373
117 ADV 0.408759 0.843373
118 P1H 0.405882 0.818182
119 OOB 0.405594 0.864198
120 LAD 0.40411 0.825581
121 A A 0.40411 0.829268
122 UPA 0.403846 0.86747
123 4UU 0.401316 0.833333
124 GA7 0.401316 0.865854
125 A3D 0.401235 0.876543
126 80F 0.401235 0.808989
127 XAH 0.4 0.806818
128 DLL 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1BUC; Ligand: CAA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1buc.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1BUC; Ligand: CAA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1buc.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1BUC; Ligand: FAD; Similar sites found with APoc: 1
This union binding pocket(no: 3) in the query (biounit: 1buc.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 1R2J FAD 42.8198
Pocket No.: 4; Query (leader) PDB : 1BUC; Ligand: FAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1buc.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1BUC; Ligand: FAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1buc.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1BUC; Ligand: FAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1buc.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1BUC; Ligand: CAA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 1buc.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 1BUC; Ligand: CAA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 1buc.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
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