Receptor
PDB id Resolution Class Description Source Keywords
4A6F 1.68 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH PHOSPHOS SACCHAROMYCES CEREVISIAE SIGNALING PROTEIN POST TRANSLATIONAL MODIFICATION
Ref.: STRUCTURAL ANALYSES OF SLM1-PH DOMAIN DEMONSTRATE L BINDING IN THE NON-CANONICAL SITE PLOS ONE V. 7 36526 2012
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PO4 A:1583;
A:1586;
Invalid;
Invalid;
none;
none;
submit data
94.971 O4 P [O-]P...
SEP A:1584;
A:1585;
B:1584;
B:1585;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
185.072 C3 H8 N O6 P C([C@...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
4A6F 1.68 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF SLM1-PH DOMAIN IN COMPLEX WITH PHOSPHOS SACCHAROMYCES CEREVISIAE SIGNALING PROTEIN POST TRANSLATIONAL MODIFICATION
Ref.: STRUCTURAL ANALYSES OF SLM1-PH DOMAIN DEMONSTRATE L BINDING IN THE NON-CANONICAL SITE PLOS ONE V. 7 36526 2012
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 473 families.
1 4A6F - SEP C3 H8 N O6 P C([C@@H](C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 355 families.
1 4A6F - SEP C3 H8 N O6 P C([C@@H](C....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 272 families.
1 4A6F - SEP C3 H8 N O6 P C([C@@H](C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: SEP; Similar ligands found: 14
No: Ligand ECFP6 Tc MDL keys Tc
1 SEP 1 1
2 3PG 0.515152 0.74359
3 4TP 0.513514 0.833333
4 GSE 0.512195 0.833333
5 DEZ 0.459459 0.707317
6 DG2 0.459459 0.675
7 DER 0.459459 0.707317
8 RGP 0.45 0.871795
9 PA5 0.425 0.707317
10 R10 0.425 0.707317
11 PGA 0.40625 0.710526
12 OSE 0.405405 0.733333
13 LG6 0.404762 0.707317
14 6PG 0.404762 0.707317
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 4A6F; Ligand: SEP; Similar sites found: 319
This union binding pocket(no: 1) in the query (biounit: 4a6f.bio1) has 8 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1JA9 NDP 0.002573 0.51867 None
2 1HEX NAD 0.000911 0.50801 None
3 3ACC 5GP 0.0009843 0.47652 None
4 1UWZ THU 0.001768 0.47403 None
5 3O03 NAP 0.004428 0.46943 None
6 2FWP ICR 0.007273 0.46785 None
7 1TU3 GNP 0.004581 0.46713 None
8 3IHB TRS 0.001851 0.46549 None
9 2P4T NAP 0.007271 0.46314 None
10 3RKR NAP 0.002198 0.46177 None
11 2PTZ PAH 0.003949 0.456 None
12 3VPD ANP 0.006202 0.45358 None
13 3V1U NAD 0.008374 0.45304 None
14 2D37 NAD 0.009824 0.45211 None
15 2D37 FMN 0.009265 0.45211 None
16 2ALG HP6 0.007427 0.44944 None
17 2ALG DAO 0.007427 0.44944 None
18 1UJ5 5RP 0.005543 0.44386 None
19 3UIE ADX 0.008041 0.43788 None
20 3H86 AP5 0.03806 0.43691 None
21 2HMT NAI 0.04311 0.43491 None
22 4E1N TQX 0.01518 0.43462 None
23 2BME GNP 0.01285 0.43434 None
24 4TMK T5A 0.0281 0.43197 None
25 1JA9 PYQ 0.02542 0.43087 None
26 1KHT AMP 0.008819 0.42861 None
27 3PAK MAN 0.01557 0.42613 None
28 2VKL MLT 0.004011 0.41976 None
29 4DVE BTN 0.01522 0.41909 None
30 5FIT AP2 0.02475 0.41054 None
31 1R5A GTS 0.0218 0.40872 None
32 1A8R GTP 0.04491 0.40625 None
33 3UIE ANP 0.02757 0.4059 None
34 3IHB GLU 0.0008095 0.40418 None
35 3VPD CIT 0.01058 0.40007 None
36 4BAS GNP 0.003275 0.46823 1.66667
37 4NTD FAD 0.04406 0.427 1.66667
38 1PFK FBP 0.02242 0.4105 1.66667
39 2NW9 FT6 0.02036 0.40488 1.66667
40 5YAS FAC 0.0007118 0.48655 2.5
41 4PO2 ASN ARG LEU LEU LEU THR GLY 0.003202 0.47053 2.5
42 2XK9 XK9 0.01029 0.45837 2.5
43 1Q3Q ANP 0.02949 0.45009 2.5
44 3ZY6 GFB 0.01001 0.4426 2.5
45 3VHZ SOG 0.04727 0.44045 2.5
46 1YOE RIB 0.005743 0.438 2.5
47 3OZG SSI 0.00998 0.43516 2.5
48 1R18 SAH 0.01569 0.43385 2.5
49 1T57 FMN 0.0177 0.43106 2.5
50 3MBG FAD 0.02299 0.42936 2.5
51 3U5S FAD 0.02181 0.42463 2.5
52 1XNK XS2 0.01981 0.4197 2.5
53 2V5K OXM 0.02199 0.41207 2.5
54 3E4O SIN 0.01814 0.40737 2.5
55 1NU4 MLA 0.002117 0.4435 3.09278
56 1L1Q 9DA 0.01008 0.44068 3.22581
57 4KSY 1SY 0.0002726 0.50453 3.33333
58 3HY3 10F 0.002156 0.48139 3.33333
59 4IS0 1R4 0.003726 0.46704 3.33333
60 1ZUW DGL 0.002968 0.45243 3.33333
61 2J0W ADP 0.005423 0.45097 3.33333
62 1TIW TFB 0.01705 0.45031 3.33333
63 1TIW FAD 0.01705 0.45031 3.33333
64 1B66 BIO 0.01014 0.44396 3.33333
65 4O1M NAD 0.0155 0.44389 3.33333
66 1UZN NAP 0.006912 0.44343 3.33333
67 4IS0 GDS 0.008563 0.44064 3.33333
68 1B8U OAA 0.0245 0.43527 3.33333
69 1B8U NAD 0.01375 0.43527 3.33333
70 3ZS7 ATP 0.03173 0.41748 3.33333
71 2AZ3 CDP 0.01642 0.41235 3.33333
72 1VPM COA 0.04807 0.40917 3.33333
73 2J0W ASP 0.01813 0.40109 3.33333
74 2GDZ NAD 0.0004481 0.52779 4.16667
75 3IO3 ADP 0.001558 0.48126 4.16667
76 1WUR 8DG 0.002315 0.478 4.16667
77 4R33 TRP 0.004479 0.47716 4.16667
78 4R33 SAH 0.004479 0.47716 4.16667
79 1E7S NAP 0.005153 0.47259 4.16667
80 2NT8 ATP 0.005313 0.46797 4.16667
81 2WQP WQP 0.00795 0.45571 4.16667
82 2YK7 CSF 0.007176 0.44845 4.16667
83 1IYE PGU 0.01474 0.44631 4.16667
84 2GJ3 FAD 0.01909 0.43953 4.16667
85 1UBY DMA 0.009706 0.4378 4.16667
86 2QDT I38 0.00953 0.4362 4.16667
87 4ME6 ADP 0.005557 0.43289 4.16667
88 1X54 4AD 0.0282 0.42316 4.16667
89 2YD6 FLC 0.00009338 0.41825 4.16667
90 4GCS 1RG 0.04338 0.4123 4.16667
91 3TXO 07U 0.0001463 0.52719 5
92 2CKM AA7 0.001349 0.51517 5
93 1V2X SAM 0.001276 0.48785 5
94 3Q9T FAY 0.004872 0.48077 5
95 1RY2 AMP 0.003682 0.47223 5
96 2C31 TZD 0.02337 0.46374 5
97 2C31 ADP 0.02289 0.46374 5
98 4DL8 UMP AF3 PO4 0.003735 0.46336 5
99 2BNE U5P 0.009242 0.46039 5
100 1OTH PAO 0.008597 0.46037 5
101 3TO7 COA 0.01316 0.45662 5
102 1OFH ADP 0.02715 0.45285 5
103 4G10 GSH 0.004626 0.45245 5
104 2YVF FAD 0.03444 0.44801 5
105 2YVF NAD 0.03526 0.44801 5
106 1XVV CCQ 0.01974 0.44768 5
107 3WO0 ADP 0.02264 0.44142 5
108 3WO0 ALA 0.02264 0.44142 5
109 1VJT NAD 0.01049 0.43978 5
110 1TRD PGH 0.007894 0.43601 5
111 1C0I BE2 0.04194 0.43409 5
112 1C0I FAD 0.04194 0.43409 5
113 3DAG FEG 0.01999 0.43264 5
114 4LSJ LSJ 0.01593 0.43189 5
115 1LO0 BC1 0.02752 0.41924 5
116 2PYU IMP 0.01101 0.41817 5
117 1C1E ENH 0.01501 0.41148 5
118 2XUM OGA 0.01898 0.40339 5
119 3H22 B53 0.03258 0.40217 5
120 4F2Q QUS 0.00048 0.50073 5.83333
121 1HFA PIO 0.0003819 0.4842 5.83333
122 4INB 1F6 0.001895 0.47883 5.83333
123 3PNL ADP 0.002467 0.47654 5.83333
124 3UH0 TSB 0.003593 0.46959 5.83333
125 2HVW DDN 0.002055 0.46833 5.83333
126 1C4U IH1 0.003308 0.46517 5.83333
127 3SVL FMN 0.002957 0.46467 5.83333
128 1KOL NAD 0.009744 0.46187 5.83333
129 2NLI FMN 0.01689 0.45995 5.83333
130 2NLI LAC 0.01689 0.45995 5.83333
131 2Q97 ATP 0.007128 0.45209 5.83333
132 3P0K FAD 0.008525 0.44796 5.83333
133 3TKA CTN 0.002543 0.44518 5.83333
134 3A8U PLP 0.01233 0.44252 5.83333
135 1NZY BCA 0.01637 0.44005 5.83333
136 1O0D 163 0.009472 0.43836 5.83333
137 2DKH FAD 0.02301 0.43789 5.83333
138 2DKH 3HB 0.02941 0.43789 5.83333
139 3DCM SAM 0.01152 0.43762 5.83333
140 3C1O NAP 0.02026 0.43092 5.83333
141 4LNL PLG 0.01504 0.42386 5.83333
142 2QQF A1R 0.0299 0.42315 5.83333
143 1DKU AP2 0.03724 0.4199 5.83333
144 2HVW DCP 0.02183 0.41548 5.83333
145 3CBG SAH 0.02702 0.41454 5.83333
146 1YS4 NAP 0.03832 0.41306 5.83333
147 4LNL 2BO 0.02963 0.41056 5.83333
148 4LNL 2BK 0.02963 0.41056 5.83333
149 1H8G CHT 0.009983 0.41028 6.31579
150 2AMV BIN 0.01054 0.47173 6.66667
151 1V5F FAD 0.04009 0.47062 6.66667
152 1V5F TPP 0.04009 0.47062 6.66667
153 2J7T 274 0.006024 0.465 6.66667
154 3QQA TCH 0.004526 0.46257 6.66667
155 3OIG IMJ 0.01227 0.45303 6.66667
156 2BGM NAJ 0.02775 0.45164 6.66667
157 4BI7 PGA 0.003284 0.45022 6.66667
158 3OIG NAD 0.03549 0.44662 6.66667
159 4RNV HBA 0.006978 0.44527 6.66667
160 4DQ2 BTX 0.01429 0.44457 6.66667
161 1SS4 CIT 0.01166 0.44407 6.66667
162 1FP1 SAH 0.006749 0.44396 6.66667
163 1NX4 AKG 0.005873 0.43171 6.66667
164 2WM1 13P 0.00827 0.42728 6.66667
165 4RNV FMN 0.01763 0.4233 6.66667
166 2HGZ PBF 0.03637 0.41716 6.66667
167 4AIG FLX 0.01943 0.41368 6.66667
168 1CKN GTP 0.02165 0.40888 6.66667
169 1FP1 HCC 0.03753 0.40876 6.66667
170 1VBH PEP 0.01765 0.40797 6.66667
171 4RNX FMN 0.04247 0.40674 6.66667
172 3UBW 6SP 0.000319 0.40589 6.66667
173 1QF5 RPL 0.00506 0.48835 7.5
174 1QF5 GDP 0.00506 0.48835 7.5
175 1UXG FUM 0.004025 0.48541 7.5
176 1UXG NAD 0.004025 0.48541 7.5
177 1VDC FAD 0.008472 0.47557 7.5
178 1GSA ADP 0.008821 0.47456 7.5
179 3JQM GTP 0.001261 0.47112 7.5
180 2ZJ3 G6P 0.00283 0.46969 7.5
181 1T8U UAP SGN IDS SGN 0.01436 0.45449 7.5
182 1DSS NAD 0.007894 0.45443 7.5
183 2PWY SAH 0.009292 0.44758 7.5
184 3D3W NAP 0.0185 0.44315 7.5
185 1D3V ABH 0.01282 0.44308 7.5
186 1PR9 NAP 0.01913 0.44235 7.5
187 2F7C CCU 0.00431 0.43836 7.5
188 1PL6 572 0.02396 0.43691 7.5
189 1GSA GSH 0.01153 0.4358 7.5
190 4CMF PXG 0.04852 0.43335 7.5
191 1XHL NDP 0.02679 0.43312 7.5
192 1FDJ 13P 0.008257 0.42437 7.5
193 1PL6 NAD 0.02546 0.42261 7.5
194 1FDJ 2FP 0.01564 0.4208 7.5
195 3CXO 3LR 0.04115 0.41934 7.5
196 2DUA OXL 0.02957 0.41595 7.5
197 4G1V FAD 0.04972 0.41359 7.5
198 2D5X L35 0.01677 0.40908 7.5
199 3ZZQ TRP 0.009533 0.43407 7.69231
200 1U7Z PMT 0.002671 0.48951 8.33333
201 1SOW NAD 0.005817 0.4697 8.33333
202 4PLG NAI 0.009307 0.46403 8.33333
203 4PLG OXM 0.009307 0.46403 8.33333
204 1NN5 2DT 0.007456 0.46128 8.33333
205 1NN5 ANP 0.007456 0.46128 8.33333
206 1T26 GBD 0.04114 0.45686 8.33333
207 1T26 NAI 0.04114 0.45686 8.33333
208 4ARF IP8 GLY PRO ALA 0.004381 0.45367 8.33333
209 3BLI ACO 0.007838 0.4499 8.33333
210 1ZGA SAH 0.005257 0.44737 8.33333
211 2OYS FMN 0.008481 0.4464 8.33333
212 2W1A TSA 0.005 0.44367 8.33333
213 4M2K PLP 0.004851 0.44169 8.33333
214 4AQL TXC 0.00969 0.43784 8.33333
215 1GAD NAD 0.02458 0.42913 8.33333
216 1RYH GNP 0.01406 0.41707 8.33333
217 3U4C NDP 0.04992 0.41469 8.33333
218 3BLI PYR 0.009749 0.41423 8.33333
219 1RRC ADP 0.03735 0.41366 8.33333
220 1SOW OXL 0.01129 0.40333 8.33333
221 5E65 5N6 GAL 0.04647 0.4012 8.33333
222 2NZU BG6 0.0129 0.4176 9.09091
223 2YBQ UP2 0.001143 0.51355 9.16667
224 3R35 4CO 0.002031 0.49344 9.16667
225 1FIQ FAD 0.004073 0.48063 9.16667
226 4KCF FMN 0.0014 0.47926 9.16667
227 4IVG ANP 0.0024 0.47892 9.16667
228 3RFV NAI 0.003762 0.47471 9.16667
229 3FPZ AHZ 0.01986 0.47059 9.16667
230 4C0C WVH 0.01151 0.46545 9.16667
231 1I2B UPG 0.01795 0.46134 9.16667
232 1I2B USQ 0.01795 0.46134 9.16667
233 1I2B NAD 0.01795 0.46134 9.16667
234 4N02 FNR 0.02437 0.4522 9.16667
235 4JCA CIT 0.0008152 0.45205 9.16667
236 2YBQ SAH 0.006976 0.4491 9.16667
237 1OIK C26 0.006716 0.44407 9.16667
238 8CAT NDP 0.009791 0.44309 9.16667
239 2EFJ SAH 0.007891 0.44249 9.16667
240 2XI7 XI7 0.002634 0.43883 9.16667
241 3CQD ATP 0.02654 0.43853 9.16667
242 3RFV 15L 0.01967 0.4344 9.16667
243 2J8Z NAP 0.02456 0.43169 9.16667
244 4KCF AKM 0.01964 0.43018 9.16667
245 1YFZ IMP 0.007367 0.42683 9.16667
246 1YWQ FMN 0.01489 0.42615 9.16667
247 1LTH FBP 0.02667 0.40174 9.16667
248 4USQ FAD 0.0004621 0.53276 10
249 3BL6 FMC 0.001126 0.48862 10
250 2DTX BMA 0.008053 0.46958 10
251 4GYW UDP 0.01801 0.44267 10
252 4NES UDP 0.01253 0.43202 10
253 4F8L GAL 0.005007 0.42507 10
254 1FMB HYB 0.001243 0.47698 10.5769
255 2XVE FAD 0.01297 0.47359 10.8333
256 1GVF PGH 0.003815 0.44407 10.8333
257 2ZWS PLM 0.002529 0.4397 10.8333
258 2PT9 2MH 0.03286 0.43032 10.8333
259 4N7U 2JA 0.005391 0.41857 10.8333
260 1R4A GNP 0.009662 0.41317 10.8333
261 3K56 IS3 0.03431 0.40527 10.8333
262 1UPT GTP 0.01247 0.40502 10.8333
263 1XOC VAL ASP SER LYS ASN THR SER SER TRP 0.002382 0.50026 11.6667
264 3GEG NAD 0.01418 0.44345 11.6667
265 1FL3 SPB 0.01001 0.43994 11.6667
266 1CL2 PPG 0.011 0.43867 11.6667
267 3S2Y FMN 0.01702 0.42313 11.6667
268 3JDW ORN 0.02171 0.41762 11.6667
269 4BT5 23B 0.01628 0.41515 11.6667
270 1WTC ACP 0.0222 0.4151 11.6667
271 3IB8 AMP 0.0294 0.40876 11.6667
272 2OZE AGS 0.0003656 0.51411 12.5
273 1TDF NAP 0.0077 0.49182 12.5
274 1TDF FAD 0.004247 0.49182 12.5
275 4LFL TG6 0.002418 0.45966 12.5
276 3AHC TPP 0.01081 0.45245 12.5
277 1QS0 TDP 0.006479 0.45079 12.5
278 1VR0 3SL 0.00439 0.44387 12.5
279 2X61 CH 0.0363 0.43269 12.5
280 2CSN CKI 0.02554 0.42688 12.5
281 3GB5 FMN 0.02879 0.41657 12.5
282 1B9I PXG 0.03626 0.41582 12.5
283 2R00 OEG 0.01038 0.41291 12.5
284 2AJH MET 0.003125 0.40001 12.5
285 2V7T SAH 0.01701 0.4785 13.3333
286 1O6B ADP 0.02508 0.44614 13.3333
287 2QGI UDP 0.004949 0.43539 13.3333
288 3FED BIX 0.01373 0.42994 13.3333
289 2OI2 DP6 0.02008 0.41522 13.3333
290 1OGZ EQU 0.02122 0.41398 13.3333
291 1WVG CXY 0.01269 0.43877 14.1667
292 1WVG APR 0.02479 0.42758 14.1667
293 4IOK ADP 0.03007 0.42435 14.1667
294 4IOK XPO 0.02675 0.42296 14.1667
295 4C1K PEP 0.01592 0.41303 14.1667
296 3TA2 AKG 0.01257 0.4476 14.4068
297 1TO9 HMH 0.01161 0.41391 15
298 2XDQ MGX 0.003822 0.40486 15
299 1NME 159 0.03417 0.40536 15.2174
300 1NW5 SAM 0.004199 0.46069 15.8333
301 3N5O GSH 0.01224 0.43443 15.8333
302 2Q8H TF4 0.004267 0.40277 15.8333
303 2HGS ADP 0.00137 0.49008 16.6667
304 1Y13 BIO 0.001718 0.46718 16.6667
305 2H6B 3C4 0.02436 0.45361 16.6667
306 2HGS GSH 0.01265 0.42773 16.6667
307 3WJP ANP 0.0303 0.4137 17.5
308 3IOI 1GW 0.0004743 0.52938 18.3333
309 1V2G OCA 0.004079 0.45066 18.3333
310 2P1M IHP 0.02876 0.42408 18.3333
311 4BMO FMN 0.001401 0.49476 18.4874
312 1GAF NPE 0.02013 0.42566 20
313 2XBP ATP 0.03988 0.43574 21.2389
314 3KJI ADP 0.02206 0.41726 21.6667
315 1NOW IFG 0.01758 0.40806 21.6667
316 2GSD NAD 0.02649 0.43659 22.5
317 3GE7 AFQ 0.003479 0.4832 24.1667
318 2WE5 ADP 0.0282 0.4097 28.3333
319 1P9P SAH 0.003494 0.46852 38.3333
Pocket No.: 2; Query (leader) PDB : 4A6F; Ligand: SEP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 4a6f.bio1) has 5 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 4A6F; Ligand: SEP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 4a6f.bio1) has 6 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 4A6F; Ligand: SEP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 4a6f.bio1) has 5 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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